Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2464

Experiment: Lactate-nitrate; anaerobic; cobalt stress sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2463 and Psest_2464 are separated by 12 nucleotidesPsest_2464 and Psest_2465 are separated by 80 nucleotides Psest_2463: Psest_2463 - Predicted esterase of the alpha-beta hydrolase superfamily, at 2,634,098 to 2,635,087 _2463 Psest_2464: Psest_2464 - Predicted permease, at 2,635,100 to 2,636,194 _2464 Psest_2465: Psest_2465 - hypothetical protein, at 2,636,275 to 2,637,078 _2465 Position (kb) 2635 2636 2637Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2634.104 kb on - strandat 2634.120 kb on + strandat 2634.146 kb on + strandat 2634.293 kb on + strand, within Psest_2463at 2634.646 kb on + strand, within Psest_2463at 2634.647 kb on - strand, within Psest_2463at 2634.647 kb on - strand, within Psest_2463at 2634.647 kb on - strand, within Psest_2463at 2634.939 kb on - strand, within Psest_2463at 2634.939 kb on - strand, within Psest_2463at 2635.001 kb on + strandat 2635.002 kb on - strandat 2635.010 kb on + strandat 2635.011 kb on - strandat 2635.011 kb on - strandat 2635.011 kb on - strandat 2635.102 kb on - strandat 2635.321 kb on - strand, within Psest_2464at 2635.524 kb on + strand, within Psest_2464at 2635.524 kb on + strand, within Psest_2464at 2635.524 kb on + strand, within Psest_2464at 2635.525 kb on - strand, within Psest_2464at 2635.525 kb on - strand, within Psest_2464at 2635.525 kb on - strand, within Psest_2464at 2635.525 kb on - strand, within Psest_2464at 2635.605 kb on + strand, within Psest_2464at 2635.606 kb on - strand, within Psest_2464at 2635.606 kb on - strand, within Psest_2464at 2635.779 kb on + strand, within Psest_2464at 2635.780 kb on - strand, within Psest_2464at 2635.780 kb on - strand, within Psest_2464at 2635.780 kb on - strand, within Psest_2464at 2635.988 kb on + strand, within Psest_2464at 2636.005 kb on + strand, within Psest_2464at 2636.005 kb on + strand, within Psest_2464at 2636.005 kb on + strand, within Psest_2464at 2636.005 kb on + strand, within Psest_2464at 2636.005 kb on + strand, within Psest_2464at 2636.006 kb on - strand, within Psest_2464at 2636.006 kb on - strand, within Psest_2464at 2636.006 kb on - strand, within Psest_2464at 2636.006 kb on - strand, within Psest_2464at 2636.006 kb on - strand, within Psest_2464at 2636.006 kb on - strand, within Psest_2464at 2636.006 kb on - strand, within Psest_2464at 2636.006 kb on - strand, within Psest_2464at 2636.010 kb on - strand, within Psest_2464at 2636.010 kb on - strand, within Psest_2464at 2636.203 kb on - strandat 2636.203 kb on - strandat 2636.214 kb on + strandat 2636.214 kb on + strandat 2636.583 kb on - strand, within Psest_2465at 2636.583 kb on - strand, within Psest_2465at 2636.612 kb on + strand, within Psest_2465at 2636.660 kb on + strand, within Psest_2465at 2636.660 kb on + strand, within Psest_2465at 2636.684 kb on + strand, within Psest_2465at 2636.826 kb on + strand, within Psest_2465at 2636.826 kb on + strand, within Psest_2465at 2636.827 kb on - strand, within Psest_2465at 2636.927 kb on + strand, within Psest_2465at 2636.928 kb on - strand, within Psest_2465at 2636.928 kb on - strand, within Psest_2465at 2637.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cobalt stress sample3
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2,634,104 - +0.2
2,634,120 + +0.5
2,634,146 + +3.4
2,634,293 + Psest_2463 0.20 +0.5
2,634,646 + Psest_2463 0.55 +0.1
2,634,647 - Psest_2463 0.55 -0.3
2,634,647 - Psest_2463 0.55 +0.8
2,634,647 - Psest_2463 0.55 +0.1
2,634,939 - Psest_2463 0.85 -1.2
2,634,939 - Psest_2463 0.85 -0.5
2,635,001 + -0.2
2,635,002 - +0.7
2,635,010 + +3.1
2,635,011 - -0.6
2,635,011 - -0.6
2,635,011 - +0.7
2,635,102 - -1.0
2,635,321 - Psest_2464 0.20 -0.1
2,635,524 + Psest_2464 0.39 +0.4
2,635,524 + Psest_2464 0.39 -0.6
2,635,524 + Psest_2464 0.39 -0.2
2,635,525 - Psest_2464 0.39 +0.8
2,635,525 - Psest_2464 0.39 -0.3
2,635,525 - Psest_2464 0.39 -0.2
2,635,525 - Psest_2464 0.39 -0.2
2,635,605 + Psest_2464 0.46 -1.2
2,635,606 - Psest_2464 0.46 -0.7
2,635,606 - Psest_2464 0.46 -2.0
2,635,779 + Psest_2464 0.62 +0.5
2,635,780 - Psest_2464 0.62 +0.5
2,635,780 - Psest_2464 0.62 +0.9
2,635,780 - Psest_2464 0.62 -0.0
2,635,988 + Psest_2464 0.81 -0.3
2,636,005 + Psest_2464 0.83 +1.0
2,636,005 + Psest_2464 0.83 +0.6
2,636,005 + Psest_2464 0.83 +0.7
2,636,005 + Psest_2464 0.83 -0.1
2,636,005 + Psest_2464 0.83 +2.3
2,636,006 - Psest_2464 0.83 +1.0
2,636,006 - Psest_2464 0.83 +0.3
2,636,006 - Psest_2464 0.83 -0.7
2,636,006 - Psest_2464 0.83 +0.4
2,636,006 - Psest_2464 0.83 +0.6
2,636,006 - Psest_2464 0.83 -0.2
2,636,006 - Psest_2464 0.83 +0.6
2,636,006 - Psest_2464 0.83 -0.3
2,636,010 - Psest_2464 0.83 +0.6
2,636,010 - Psest_2464 0.83 +0.1
2,636,203 - +1.3
2,636,203 - -0.1
2,636,214 + -1.9
2,636,214 + -1.2
2,636,583 - Psest_2465 0.38 +3.5
2,636,583 - Psest_2465 0.38 +0.7
2,636,612 + Psest_2465 0.42 -0.7
2,636,660 + Psest_2465 0.48 -2.2
2,636,660 + Psest_2465 0.48 +2.9
2,636,684 + Psest_2465 0.51 -0.4
2,636,826 + Psest_2465 0.69 +1.3
2,636,826 + Psest_2465 0.69 +1.2
2,636,827 - Psest_2465 0.69 +0.3
2,636,927 + Psest_2465 0.81 +0.6
2,636,928 - Psest_2465 0.81 +0.7
2,636,928 - Psest_2465 0.81 +2.9
2,637,078 + +0.6

Or see this region's nucleotide sequence