Experiment: Lactate-nitrate; anaerobic; cobalt stress sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2463 and Psest_2464 are separated by 12 nucleotides Psest_2464 and Psest_2465 are separated by 80 nucleotides
Psest_2463: Psest_2463 - Predicted esterase of the alpha-beta hydrolase superfamily, at 2,634,098 to 2,635,087
_2463
Psest_2464: Psest_2464 - Predicted permease, at 2,635,100 to 2,636,194
_2464
Psest_2465: Psest_2465 - hypothetical protein, at 2,636,275 to 2,637,078
_2465
Position (kb)
2635
2636
2637 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2634.104 kb on - strand at 2634.120 kb on + strand at 2634.146 kb on + strand at 2634.293 kb on + strand, within Psest_2463 at 2634.646 kb on + strand, within Psest_2463 at 2634.647 kb on - strand, within Psest_2463 at 2634.647 kb on - strand, within Psest_2463 at 2634.647 kb on - strand, within Psest_2463 at 2634.939 kb on - strand, within Psest_2463 at 2634.939 kb on - strand, within Psest_2463 at 2635.001 kb on + strand at 2635.002 kb on - strand at 2635.010 kb on + strand at 2635.011 kb on - strand at 2635.011 kb on - strand at 2635.011 kb on - strand at 2635.102 kb on - strand at 2635.321 kb on - strand, within Psest_2464 at 2635.524 kb on + strand, within Psest_2464 at 2635.524 kb on + strand, within Psest_2464 at 2635.524 kb on + strand, within Psest_2464 at 2635.525 kb on - strand, within Psest_2464 at 2635.525 kb on - strand, within Psest_2464 at 2635.525 kb on - strand, within Psest_2464 at 2635.525 kb on - strand, within Psest_2464 at 2635.605 kb on + strand, within Psest_2464 at 2635.606 kb on - strand, within Psest_2464 at 2635.606 kb on - strand, within Psest_2464 at 2635.779 kb on + strand, within Psest_2464 at 2635.780 kb on - strand, within Psest_2464 at 2635.780 kb on - strand, within Psest_2464 at 2635.780 kb on - strand, within Psest_2464 at 2635.988 kb on + strand, within Psest_2464 at 2636.005 kb on + strand, within Psest_2464 at 2636.005 kb on + strand, within Psest_2464 at 2636.005 kb on + strand, within Psest_2464 at 2636.005 kb on + strand, within Psest_2464 at 2636.005 kb on + strand, within Psest_2464 at 2636.006 kb on - strand, within Psest_2464 at 2636.006 kb on - strand, within Psest_2464 at 2636.006 kb on - strand, within Psest_2464 at 2636.006 kb on - strand, within Psest_2464 at 2636.006 kb on - strand, within Psest_2464 at 2636.006 kb on - strand, within Psest_2464 at 2636.006 kb on - strand, within Psest_2464 at 2636.006 kb on - strand, within Psest_2464 at 2636.010 kb on - strand, within Psest_2464 at 2636.010 kb on - strand, within Psest_2464 at 2636.203 kb on - strand at 2636.203 kb on - strand at 2636.214 kb on + strand at 2636.214 kb on + strand at 2636.583 kb on - strand, within Psest_2465 at 2636.583 kb on - strand, within Psest_2465 at 2636.612 kb on + strand, within Psest_2465 at 2636.660 kb on + strand, within Psest_2465 at 2636.660 kb on + strand, within Psest_2465 at 2636.684 kb on + strand, within Psest_2465 at 2636.826 kb on + strand, within Psest_2465 at 2636.826 kb on + strand, within Psest_2465 at 2636.827 kb on - strand, within Psest_2465 at 2636.927 kb on + strand, within Psest_2465 at 2636.928 kb on - strand, within Psest_2465 at 2636.928 kb on - strand, within Psest_2465 at 2637.078 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cobalt stress sample3 remove 2,634,104 - +0.2 2,634,120 + +0.5 2,634,146 + +3.4 2,634,293 + Psest_2463 0.20 +0.5 2,634,646 + Psest_2463 0.55 +0.1 2,634,647 - Psest_2463 0.55 -0.3 2,634,647 - Psest_2463 0.55 +0.8 2,634,647 - Psest_2463 0.55 +0.1 2,634,939 - Psest_2463 0.85 -1.2 2,634,939 - Psest_2463 0.85 -0.5 2,635,001 + -0.2 2,635,002 - +0.7 2,635,010 + +3.1 2,635,011 - -0.6 2,635,011 - -0.6 2,635,011 - +0.7 2,635,102 - -1.0 2,635,321 - Psest_2464 0.20 -0.1 2,635,524 + Psest_2464 0.39 +0.4 2,635,524 + Psest_2464 0.39 -0.6 2,635,524 + Psest_2464 0.39 -0.2 2,635,525 - Psest_2464 0.39 +0.8 2,635,525 - Psest_2464 0.39 -0.3 2,635,525 - Psest_2464 0.39 -0.2 2,635,525 - Psest_2464 0.39 -0.2 2,635,605 + Psest_2464 0.46 -1.2 2,635,606 - Psest_2464 0.46 -0.7 2,635,606 - Psest_2464 0.46 -2.0 2,635,779 + Psest_2464 0.62 +0.5 2,635,780 - Psest_2464 0.62 +0.5 2,635,780 - Psest_2464 0.62 +0.9 2,635,780 - Psest_2464 0.62 -0.0 2,635,988 + Psest_2464 0.81 -0.3 2,636,005 + Psest_2464 0.83 +1.0 2,636,005 + Psest_2464 0.83 +0.6 2,636,005 + Psest_2464 0.83 +0.7 2,636,005 + Psest_2464 0.83 -0.1 2,636,005 + Psest_2464 0.83 +2.3 2,636,006 - Psest_2464 0.83 +1.0 2,636,006 - Psest_2464 0.83 +0.3 2,636,006 - Psest_2464 0.83 -0.7 2,636,006 - Psest_2464 0.83 +0.4 2,636,006 - Psest_2464 0.83 +0.6 2,636,006 - Psest_2464 0.83 -0.2 2,636,006 - Psest_2464 0.83 +0.6 2,636,006 - Psest_2464 0.83 -0.3 2,636,010 - Psest_2464 0.83 +0.6 2,636,010 - Psest_2464 0.83 +0.1 2,636,203 - +1.3 2,636,203 - -0.1 2,636,214 + -1.9 2,636,214 + -1.2 2,636,583 - Psest_2465 0.38 +3.5 2,636,583 - Psest_2465 0.38 +0.7 2,636,612 + Psest_2465 0.42 -0.7 2,636,660 + Psest_2465 0.48 -2.2 2,636,660 + Psest_2465 0.48 +2.9 2,636,684 + Psest_2465 0.51 -0.4 2,636,826 + Psest_2465 0.69 +1.3 2,636,826 + Psest_2465 0.69 +1.2 2,636,827 - Psest_2465 0.69 +0.3 2,636,927 + Psest_2465 0.81 +0.6 2,636,928 - Psest_2465 0.81 +0.7 2,636,928 - Psest_2465 0.81 +2.9 2,637,078 + +0.6
Or see this region's nucleotide sequence