Experiment: Lactate-nitrate; anaerobic; cobalt stress sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0638 and Psest_0639 are separated by 76 nucleotides Psest_0639 and Psest_0640 are separated by 116 nucleotides Psest_0640 and Psest_0641 are separated by 267 nucleotides
Psest_0638: Psest_0638 - Predicted lactoylglutathione lyase, at 693,380 to 693,808
_0638
Psest_0639: Psest_0639 - Uncharacterised protein family (UPF0259)., at 693,885 to 694,565
_0639
Psest_0640: Psest_0640 - Uncharacterized conserved protein, at 694,682 to 695,158
_0640
Psest_0641: Psest_0641 - 1-deoxy-D-xylulose-5-phosphate synthase, at 695,426 to 697,324
_0641
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 693.732 kb on + strand, within Psest_0638 at 693.732 kb on + strand, within Psest_0638 at 693.732 kb on + strand, within Psest_0638 at 693.732 kb on + strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.841 kb on + strand at 693.841 kb on + strand at 694.095 kb on + strand, within Psest_0639 at 694.096 kb on - strand, within Psest_0639 at 694.177 kb on + strand, within Psest_0639 at 694.178 kb on - strand, within Psest_0639 at 694.309 kb on + strand, within Psest_0639 at 694.309 kb on + strand, within Psest_0639 at 694.310 kb on - strand, within Psest_0639 at 694.378 kb on + strand, within Psest_0639 at 694.378 kb on + strand, within Psest_0639 at 694.378 kb on + strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.401 kb on + strand, within Psest_0639 at 694.401 kb on + strand, within Psest_0639 at 694.401 kb on + strand, within Psest_0639 at 694.525 kb on + strand at 694.525 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.722 kb on - strand at 694.722 kb on - strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.725 kb on - strand at 694.725 kb on - strand at 694.725 kb on - strand at 694.760 kb on + strand, within Psest_0640 at 694.760 kb on + strand, within Psest_0640 at 694.760 kb on + strand, within Psest_0640 at 694.811 kb on + strand, within Psest_0640 at 694.811 kb on + strand, within Psest_0640 at 694.811 kb on + strand, within Psest_0640 at 694.812 kb on - strand, within Psest_0640 at 694.812 kb on - strand, within Psest_0640 at 694.817 kb on + strand, within Psest_0640 at 694.817 kb on + strand, within Psest_0640 at 694.901 kb on + strand, within Psest_0640 at 694.901 kb on + strand, within Psest_0640 at 694.901 kb on + strand, within Psest_0640 at 694.902 kb on - strand, within Psest_0640 at 694.902 kb on - strand, within Psest_0640 at 695.120 kb on + strand at 695.120 kb on + strand at 695.219 kb on + strand at 695.219 kb on + strand at 695.219 kb on + strand at 695.219 kb on + strand at 695.220 kb on - strand at 695.220 kb on - strand at 695.300 kb on + strand at 695.301 kb on - strand at 695.301 kb on - strand at 695.301 kb on - strand at 695.302 kb on + strand at 695.302 kb on + strand at 695.303 kb on - strand at 695.303 kb on - strand at 695.350 kb on + strand at 695.350 kb on + strand at 695.350 kb on + strand at 695.350 kb on + strand at 695.350 kb on + strand at 695.389 kb on - strand at 695.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cobalt stress sample1 remove 693,732 + Psest_0638 0.82 +1.6 693,732 + Psest_0638 0.82 +1.1 693,732 + Psest_0638 0.82 -0.2 693,732 + Psest_0638 0.82 -0.2 693,733 - Psest_0638 0.82 -0.4 693,733 - Psest_0638 0.82 -0.1 693,733 - Psest_0638 0.82 +0.1 693,733 - Psest_0638 0.82 -2.1 693,733 - Psest_0638 0.82 +1.4 693,841 + -0.2 693,841 + +2.2 694,095 + Psest_0639 0.31 -0.2 694,096 - Psest_0639 0.31 -1.0 694,177 + Psest_0639 0.43 -0.1 694,178 - Psest_0639 0.43 -0.2 694,309 + Psest_0639 0.62 -0.3 694,309 + Psest_0639 0.62 -0.2 694,310 - Psest_0639 0.62 -0.6 694,378 + Psest_0639 0.72 +0.2 694,378 + Psest_0639 0.72 +0.7 694,378 + Psest_0639 0.72 +0.0 694,379 - Psest_0639 0.73 +0.0 694,379 - Psest_0639 0.73 -1.1 694,379 - Psest_0639 0.73 -0.2 694,379 - Psest_0639 0.73 -0.6 694,379 - Psest_0639 0.73 +0.2 694,401 + Psest_0639 0.76 +0.9 694,401 + Psest_0639 0.76 -0.4 694,401 + Psest_0639 0.76 -0.9 694,525 + +0.1 694,525 + +1.1 694,721 + +0.0 694,721 + +0.6 694,721 + +0.2 694,721 + +0.4 694,721 + -1.9 694,722 - -1.2 694,722 - -1.9 694,724 + -1.1 694,724 + +0.8 694,724 + +0.8 694,724 + +1.4 694,725 - -0.9 694,725 - -0.1 694,725 - -1.2 694,760 + Psest_0640 0.16 +2.7 694,760 + Psest_0640 0.16 +1.8 694,760 + Psest_0640 0.16 -0.4 694,811 + Psest_0640 0.27 -0.3 694,811 + Psest_0640 0.27 +0.9 694,811 + Psest_0640 0.27 +1.9 694,812 - Psest_0640 0.27 +1.4 694,812 - Psest_0640 0.27 +1.4 694,817 + Psest_0640 0.28 +2.6 694,817 + Psest_0640 0.28 -1.9 694,901 + Psest_0640 0.46 +0.2 694,901 + Psest_0640 0.46 +0.0 694,901 + Psest_0640 0.46 -1.2 694,902 - Psest_0640 0.46 -0.1 694,902 - Psest_0640 0.46 -3.0 695,120 + +1.2 695,120 + -1.6 695,219 + -1.4 695,219 + -1.9 695,219 + +1.1 695,219 + +0.4 695,220 - -1.3 695,220 - -0.3 695,300 + -2.8 695,301 - -2.2 695,301 - +0.3 695,301 - -1.1 695,302 + -0.1 695,302 + +0.3 695,303 - -0.6 695,303 - -2.2 695,350 + -1.5 695,350 + +0.1 695,350 + -0.2 695,350 + +1.5 695,350 + +0.1 695,389 - +0.2 695,389 - -0.2
Or see this region's nucleotide sequence