Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2695

Experiment: Lactate-nitrate; anaerobic; cobalt stress sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2694 and Psest_2695 are separated by 35 nucleotidesPsest_2695 and Psest_2696 are separated by 109 nucleotidesPsest_2696 and Psest_2697 are separated by 71 nucleotides Psest_2694: Psest_2694 - muconate and chloromuconate cycloisomerases, at 2,882,952 to 2,884,073 _2694 Psest_2695: Psest_2695 - Sugar phosphate permease, at 2,884,109 to 2,885,452 _2695 Psest_2696: Psest_2696 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,885,562 to 2,886,341 _2696 Psest_2697: Psest_2697 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 2,886,413 to 2,887,423 _2697 Position (kb) 2884 2885 2886Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2884.073 kb on + strandat 2884.089 kb on - strandat 2884.089 kb on - strandat 2884.347 kb on + strand, within Psest_2695at 2884.347 kb on + strand, within Psest_2695at 2884.369 kb on - strand, within Psest_2695at 2884.369 kb on - strand, within Psest_2695at 2884.422 kb on + strand, within Psest_2695at 2884.423 kb on - strand, within Psest_2695at 2884.423 kb on - strand, within Psest_2695at 2884.423 kb on - strand, within Psest_2695at 2884.872 kb on + strand, within Psest_2695at 2884.873 kb on - strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.953 kb on + strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.954 kb on - strand, within Psest_2695at 2884.957 kb on + strand, within Psest_2695at 2884.957 kb on + strand, within Psest_2695at 2884.957 kb on + strand, within Psest_2695at 2884.957 kb on + strand, within Psest_2695at 2884.958 kb on - strand, within Psest_2695at 2884.958 kb on - strand, within Psest_2695at 2884.958 kb on - strand, within Psest_2695at 2884.958 kb on - strand, within Psest_2695at 2884.961 kb on + strand, within Psest_2695at 2884.962 kb on - strand, within Psest_2695at 2884.962 kb on - strand, within Psest_2695at 2884.962 kb on - strand, within Psest_2695at 2885.016 kb on - strand, within Psest_2695at 2885.334 kb on + strandat 2885.436 kb on - strandat 2885.436 kb on - strandat 2885.436 kb on - strandat 2885.436 kb on - strandat 2885.442 kb on - strandat 2885.442 kb on - strandat 2885.465 kb on + strandat 2885.466 kb on - strandat 2885.477 kb on + strandat 2885.478 kb on - strandat 2885.607 kb on - strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.608 kb on + strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2885.609 kb on - strandat 2886.401 kb on - strandat 2886.439 kb on - strandat 2886.441 kb on + strandat 2886.442 kb on - strandat 2886.442 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cobalt stress sample1
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2,884,073 + +0.8
2,884,089 - -2.6
2,884,089 - -1.9
2,884,347 + Psest_2695 0.18 -0.3
2,884,347 + Psest_2695 0.18 +3.4
2,884,369 - Psest_2695 0.19 +0.9
2,884,369 - Psest_2695 0.19 -0.5
2,884,422 + Psest_2695 0.23 -0.6
2,884,423 - Psest_2695 0.23 +0.8
2,884,423 - Psest_2695 0.23 +0.8
2,884,423 - Psest_2695 0.23 +2.1
2,884,872 + Psest_2695 0.57 +0.4
2,884,873 - Psest_2695 0.57 +0.5
2,884,953 + Psest_2695 0.63 +1.1
2,884,953 + Psest_2695 0.63 +0.6
2,884,953 + Psest_2695 0.63 +1.5
2,884,953 + Psest_2695 0.63 +0.5
2,884,953 + Psest_2695 0.63 -1.0
2,884,953 + Psest_2695 0.63 +0.0
2,884,953 + Psest_2695 0.63 +0.3
2,884,953 + Psest_2695 0.63 +0.6
2,884,953 + Psest_2695 0.63 +0.5
2,884,953 + Psest_2695 0.63 +0.5
2,884,953 + Psest_2695 0.63 +0.1
2,884,953 + Psest_2695 0.63 -0.2
2,884,953 + Psest_2695 0.63 +1.5
2,884,954 - Psest_2695 0.63 +1.4
2,884,954 - Psest_2695 0.63 -0.0
2,884,954 - Psest_2695 0.63 -0.6
2,884,954 - Psest_2695 0.63 +0.0
2,884,954 - Psest_2695 0.63 +1.1
2,884,954 - Psest_2695 0.63 -0.8
2,884,954 - Psest_2695 0.63 -0.6
2,884,954 - Psest_2695 0.63 -0.8
2,884,954 - Psest_2695 0.63 -0.4
2,884,954 - Psest_2695 0.63 -0.7
2,884,954 - Psest_2695 0.63 -0.5
2,884,954 - Psest_2695 0.63 -0.4
2,884,954 - Psest_2695 0.63 -0.4
2,884,954 - Psest_2695 0.63 -1.0
2,884,954 - Psest_2695 0.63 +0.6
2,884,954 - Psest_2695 0.63 -0.5
2,884,957 + Psest_2695 0.63 +0.1
2,884,957 + Psest_2695 0.63 +1.4
2,884,957 + Psest_2695 0.63 +0.4
2,884,957 + Psest_2695 0.63 -0.3
2,884,958 - Psest_2695 0.63 +2.8
2,884,958 - Psest_2695 0.63 -1.2
2,884,958 - Psest_2695 0.63 +0.6
2,884,958 - Psest_2695 0.63 -0.3
2,884,961 + Psest_2695 0.63 +0.2
2,884,962 - Psest_2695 0.63 +1.2
2,884,962 - Psest_2695 0.63 -0.6
2,884,962 - Psest_2695 0.63 +1.2
2,885,016 - Psest_2695 0.67 +1.6
2,885,334 + +0.1
2,885,436 - -0.1
2,885,436 - -0.8
2,885,436 - +0.6
2,885,436 - +1.0
2,885,442 - +1.1
2,885,442 - -0.2
2,885,465 + -0.5
2,885,466 - -0.9
2,885,477 + -0.3
2,885,478 - -0.2
2,885,607 - +2.3
2,885,608 + +0.8
2,885,608 + +1.2
2,885,608 + +0.6
2,885,608 + -0.4
2,885,608 + +0.9
2,885,608 + +0.3
2,885,608 + +0.2
2,885,608 + -0.8
2,885,608 + -0.8
2,885,608 + -1.1
2,885,608 + -0.9
2,885,608 + -1.6
2,885,608 + -1.4
2,885,608 + -0.9
2,885,608 + -1.2
2,885,608 + -0.8
2,885,609 - +2.0
2,885,609 - +0.2
2,885,609 - +0.2
2,885,609 - -0.1
2,885,609 - -0.1
2,885,609 - +1.2
2,885,609 - +0.6
2,885,609 - -1.0
2,885,609 - +1.2
2,886,401 - +0.9
2,886,439 - -2.0
2,886,441 + +0.3
2,886,442 - -0.7
2,886,442 - +0.6

Or see this region's nucleotide sequence