Experiment: Lactate-nitrate; anaerobic; cobalt stress sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2694 and Psest_2695 are separated by 35 nucleotides Psest_2695 and Psest_2696 are separated by 109 nucleotides Psest_2696 and Psest_2697 are separated by 71 nucleotides
Psest_2694: Psest_2694 - muconate and chloromuconate cycloisomerases, at 2,882,952 to 2,884,073
_2694
Psest_2695: Psest_2695 - Sugar phosphate permease, at 2,884,109 to 2,885,452
_2695
Psest_2696: Psest_2696 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,885,562 to 2,886,341
_2696
Psest_2697: Psest_2697 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 2,886,413 to 2,887,423
_2697
Position (kb)
2884
2885
2886 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2884.073 kb on + strand at 2884.089 kb on - strand at 2884.089 kb on - strand at 2884.347 kb on + strand, within Psest_2695 at 2884.347 kb on + strand, within Psest_2695 at 2884.369 kb on - strand, within Psest_2695 at 2884.369 kb on - strand, within Psest_2695 at 2884.422 kb on + strand, within Psest_2695 at 2884.423 kb on - strand, within Psest_2695 at 2884.423 kb on - strand, within Psest_2695 at 2884.423 kb on - strand, within Psest_2695 at 2884.872 kb on + strand, within Psest_2695 at 2884.873 kb on - strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.953 kb on + strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.954 kb on - strand, within Psest_2695 at 2884.957 kb on + strand, within Psest_2695 at 2884.957 kb on + strand, within Psest_2695 at 2884.957 kb on + strand, within Psest_2695 at 2884.957 kb on + strand, within Psest_2695 at 2884.958 kb on - strand, within Psest_2695 at 2884.958 kb on - strand, within Psest_2695 at 2884.958 kb on - strand, within Psest_2695 at 2884.958 kb on - strand, within Psest_2695 at 2884.961 kb on + strand, within Psest_2695 at 2884.962 kb on - strand, within Psest_2695 at 2884.962 kb on - strand, within Psest_2695 at 2884.962 kb on - strand, within Psest_2695 at 2885.016 kb on - strand, within Psest_2695 at 2885.334 kb on + strand at 2885.436 kb on - strand at 2885.436 kb on - strand at 2885.436 kb on - strand at 2885.436 kb on - strand at 2885.442 kb on - strand at 2885.442 kb on - strand at 2885.465 kb on + strand at 2885.466 kb on - strand at 2885.477 kb on + strand at 2885.478 kb on - strand at 2885.607 kb on - strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.608 kb on + strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2885.609 kb on - strand at 2886.401 kb on - strand at 2886.439 kb on - strand at 2886.441 kb on + strand at 2886.442 kb on - strand at 2886.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cobalt stress sample1 remove 2,884,073 + +0.8 2,884,089 - -2.6 2,884,089 - -1.9 2,884,347 + Psest_2695 0.18 -0.3 2,884,347 + Psest_2695 0.18 +3.4 2,884,369 - Psest_2695 0.19 +0.9 2,884,369 - Psest_2695 0.19 -0.5 2,884,422 + Psest_2695 0.23 -0.6 2,884,423 - Psest_2695 0.23 +0.8 2,884,423 - Psest_2695 0.23 +0.8 2,884,423 - Psest_2695 0.23 +2.1 2,884,872 + Psest_2695 0.57 +0.4 2,884,873 - Psest_2695 0.57 +0.5 2,884,953 + Psest_2695 0.63 +1.1 2,884,953 + Psest_2695 0.63 +0.6 2,884,953 + Psest_2695 0.63 +1.5 2,884,953 + Psest_2695 0.63 +0.5 2,884,953 + Psest_2695 0.63 -1.0 2,884,953 + Psest_2695 0.63 +0.0 2,884,953 + Psest_2695 0.63 +0.3 2,884,953 + Psest_2695 0.63 +0.6 2,884,953 + Psest_2695 0.63 +0.5 2,884,953 + Psest_2695 0.63 +0.5 2,884,953 + Psest_2695 0.63 +0.1 2,884,953 + Psest_2695 0.63 -0.2 2,884,953 + Psest_2695 0.63 +1.5 2,884,954 - Psest_2695 0.63 +1.4 2,884,954 - Psest_2695 0.63 -0.0 2,884,954 - Psest_2695 0.63 -0.6 2,884,954 - Psest_2695 0.63 +0.0 2,884,954 - Psest_2695 0.63 +1.1 2,884,954 - Psest_2695 0.63 -0.8 2,884,954 - Psest_2695 0.63 -0.6 2,884,954 - Psest_2695 0.63 -0.8 2,884,954 - Psest_2695 0.63 -0.4 2,884,954 - Psest_2695 0.63 -0.7 2,884,954 - Psest_2695 0.63 -0.5 2,884,954 - Psest_2695 0.63 -0.4 2,884,954 - Psest_2695 0.63 -0.4 2,884,954 - Psest_2695 0.63 -1.0 2,884,954 - Psest_2695 0.63 +0.6 2,884,954 - Psest_2695 0.63 -0.5 2,884,957 + Psest_2695 0.63 +0.1 2,884,957 + Psest_2695 0.63 +1.4 2,884,957 + Psest_2695 0.63 +0.4 2,884,957 + Psest_2695 0.63 -0.3 2,884,958 - Psest_2695 0.63 +2.8 2,884,958 - Psest_2695 0.63 -1.2 2,884,958 - Psest_2695 0.63 +0.6 2,884,958 - Psest_2695 0.63 -0.3 2,884,961 + Psest_2695 0.63 +0.2 2,884,962 - Psest_2695 0.63 +1.2 2,884,962 - Psest_2695 0.63 -0.6 2,884,962 - Psest_2695 0.63 +1.2 2,885,016 - Psest_2695 0.67 +1.6 2,885,334 + +0.1 2,885,436 - -0.1 2,885,436 - -0.8 2,885,436 - +0.6 2,885,436 - +1.0 2,885,442 - +1.1 2,885,442 - -0.2 2,885,465 + -0.5 2,885,466 - -0.9 2,885,477 + -0.3 2,885,478 - -0.2 2,885,607 - +2.3 2,885,608 + +0.8 2,885,608 + +1.2 2,885,608 + +0.6 2,885,608 + -0.4 2,885,608 + +0.9 2,885,608 + +0.3 2,885,608 + +0.2 2,885,608 + -0.8 2,885,608 + -0.8 2,885,608 + -1.1 2,885,608 + -0.9 2,885,608 + -1.6 2,885,608 + -1.4 2,885,608 + -0.9 2,885,608 + -1.2 2,885,608 + -0.8 2,885,609 - +2.0 2,885,609 - +0.2 2,885,609 - +0.2 2,885,609 - -0.1 2,885,609 - -0.1 2,885,609 - +1.2 2,885,609 - +0.6 2,885,609 - -1.0 2,885,609 - +1.2 2,886,401 - +0.9 2,886,439 - -2.0 2,886,441 + +0.3 2,886,442 - -0.7 2,886,442 - +0.6
Or see this region's nucleotide sequence