Experiment: Lactate-nitrate; anaerobic; cobalt stress sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2692 and Psest_2693 are separated by 71 nucleotides Psest_2693 and Psest_2694 are separated by 15 nucleotides
Psest_2692: Psest_2692 - catechol 1,2-dioxygenase, proteobacterial, at 2,881,633 to 2,882,574
_2692
Psest_2693: Psest_2693 - muconolactone delta-isomerase, at 2,882,646 to 2,882,936
_2693
Psest_2694: Psest_2694 - muconate and chloromuconate cycloisomerases, at 2,882,952 to 2,884,073
_2694
Position (kb)
2882
2883 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2881.835 kb on + strand, within Psest_2692 at 2881.835 kb on + strand, within Psest_2692 at 2881.893 kb on + strand, within Psest_2692 at 2881.894 kb on - strand, within Psest_2692 at 2881.945 kb on + strand, within Psest_2692 at 2881.946 kb on - strand, within Psest_2692 at 2881.946 kb on - strand, within Psest_2692 at 2881.946 kb on - strand, within Psest_2692 at 2881.946 kb on - strand, within Psest_2692 at 2882.009 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.051 kb on + strand, within Psest_2692 at 2882.052 kb on - strand, within Psest_2692 at 2882.052 kb on - strand, within Psest_2692 at 2882.075 kb on + strand, within Psest_2692 at 2882.075 kb on + strand, within Psest_2692 at 2882.075 kb on + strand, within Psest_2692 at 2882.076 kb on - strand, within Psest_2692 at 2882.076 kb on - strand, within Psest_2692 at 2882.076 kb on - strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.081 kb on + strand, within Psest_2692 at 2882.082 kb on - strand, within Psest_2692 at 2882.082 kb on - strand, within Psest_2692 at 2882.082 kb on - strand, within Psest_2692 at 2882.246 kb on + strand, within Psest_2692 at 2882.246 kb on + strand, within Psest_2692 at 2882.246 kb on + strand, within Psest_2692 at 2882.393 kb on + strand, within Psest_2692 at 2882.393 kb on + strand, within Psest_2692 at 2882.566 kb on + strand at 2882.567 kb on - strand at 2882.593 kb on + strand at 2882.593 kb on + strand at 2882.593 kb on + strand at 2882.593 kb on + strand at 2882.593 kb on + strand at 2882.593 kb on + strand at 2882.594 kb on - strand at 2882.594 kb on - strand at 2882.594 kb on - strand at 2882.779 kb on + strand, within Psest_2693 at 2882.779 kb on + strand, within Psest_2693 at 2882.780 kb on - strand, within Psest_2693 at 2882.780 kb on - strand, within Psest_2693 at 2882.780 kb on - strand, within Psest_2693 at 2882.780 kb on - strand, within Psest_2693 at 2882.922 kb on + strand at 2882.954 kb on - strand at 2883.019 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cobalt stress sample1 remove 2,881,835 + Psest_2692 0.21 +0.7 2,881,835 + Psest_2692 0.21 -0.8 2,881,893 + Psest_2692 0.28 -0.9 2,881,894 - Psest_2692 0.28 +0.5 2,881,945 + Psest_2692 0.33 +2.2 2,881,946 - Psest_2692 0.33 +0.5 2,881,946 - Psest_2692 0.33 -1.5 2,881,946 - Psest_2692 0.33 +0.0 2,881,946 - Psest_2692 0.33 -1.1 2,882,009 + Psest_2692 0.40 +0.5 2,882,051 + Psest_2692 0.44 -0.5 2,882,051 + Psest_2692 0.44 -0.9 2,882,051 + Psest_2692 0.44 -0.6 2,882,051 + Psest_2692 0.44 +1.0 2,882,051 + Psest_2692 0.44 -0.0 2,882,051 + Psest_2692 0.44 -0.8 2,882,052 - Psest_2692 0.44 -1.0 2,882,052 - Psest_2692 0.44 -1.6 2,882,075 + Psest_2692 0.47 +0.2 2,882,075 + Psest_2692 0.47 -0.1 2,882,075 + Psest_2692 0.47 +0.0 2,882,076 - Psest_2692 0.47 -1.8 2,882,076 - Psest_2692 0.47 -0.8 2,882,076 - Psest_2692 0.47 -1.5 2,882,081 + Psest_2692 0.48 +0.9 2,882,081 + Psest_2692 0.48 -0.4 2,882,081 + Psest_2692 0.48 -0.0 2,882,081 + Psest_2692 0.48 -1.0 2,882,081 + Psest_2692 0.48 +0.2 2,882,081 + Psest_2692 0.48 +0.8 2,882,081 + Psest_2692 0.48 +0.2 2,882,082 - Psest_2692 0.48 +1.2 2,882,082 - Psest_2692 0.48 +0.2 2,882,082 - Psest_2692 0.48 +0.8 2,882,246 + Psest_2692 0.65 +0.5 2,882,246 + Psest_2692 0.65 +0.5 2,882,246 + Psest_2692 0.65 -0.8 2,882,393 + Psest_2692 0.81 -1.1 2,882,393 + Psest_2692 0.81 +0.7 2,882,566 + -0.2 2,882,567 - -0.8 2,882,593 + +1.0 2,882,593 + -2.7 2,882,593 + -0.4 2,882,593 + -1.5 2,882,593 + -0.9 2,882,593 + +1.1 2,882,594 - -0.0 2,882,594 - -0.6 2,882,594 - -0.0 2,882,779 + Psest_2693 0.46 +0.9 2,882,779 + Psest_2693 0.46 -0.3 2,882,780 - Psest_2693 0.46 +2.3 2,882,780 - Psest_2693 0.46 -0.1 2,882,780 - Psest_2693 0.46 -1.4 2,882,780 - Psest_2693 0.46 +0.1 2,882,922 + +2.0 2,882,954 - -0.1 2,883,019 - -1.8
Or see this region's nucleotide sequence