Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1697

Experiment: Lactate-nitrate; anaerobic; cobalt stress sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1695 and Psest_1696 are separated by 103 nucleotidesPsest_1696 and Psest_1697 are separated by 110 nucleotidesPsest_1697 and Psest_1699 are separated by 220 nucleotides Psest_1695: Psest_1695 - Tfp pilus assembly protein PilZ, at 1,802,451 to 1,802,807 _1695 Psest_1696: Psest_1696 - hydrolase, TatD family, at 1,802,911 to 1,803,696 _1696 Psest_1697: Psest_1697 - Gamma-aminobutyrate permease and related permeases, at 1,803,807 to 1,805,201 _1697 Psest_1699: Psest_1699 - Selenocysteine lyase, at 1,805,422 to 1,806,555 _1699 Position (kb) 1803 1804 1805 1806Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1802.900 kb on + strandat 1802.901 kb on - strandat 1802.901 kb on - strandat 1802.918 kb on + strandat 1802.918 kb on + strandat 1802.918 kb on + strandat 1802.919 kb on - strandat 1802.919 kb on - strandat 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.027 kb on - strand, within Psest_1696at 1803.027 kb on - strand, within Psest_1696at 1803.027 kb on - strand, within Psest_1696at 1803.027 kb on - strand, within Psest_1696at 1803.208 kb on + strand, within Psest_1696at 1803.208 kb on + strand, within Psest_1696at 1803.214 kb on + strand, within Psest_1696at 1803.286 kb on - strand, within Psest_1696at 1803.286 kb on - strand, within Psest_1696at 1803.338 kb on + strand, within Psest_1696at 1803.338 kb on + strand, within Psest_1696at 1803.338 kb on + strand, within Psest_1696at 1803.427 kb on + strand, within Psest_1696at 1803.427 kb on + strand, within Psest_1696at 1803.427 kb on + strand, within Psest_1696at 1803.427 kb on + strand, within Psest_1696at 1803.427 kb on + strand, within Psest_1696at 1803.427 kb on + strand, within Psest_1696at 1803.427 kb on + strand, within Psest_1696at 1803.427 kb on + strand, within Psest_1696at 1803.427 kb on + strand, within Psest_1696at 1803.427 kb on + strand, within Psest_1696at 1803.427 kb on + strand, within Psest_1696at 1803.428 kb on - strand, within Psest_1696at 1803.428 kb on - strand, within Psest_1696at 1803.428 kb on - strand, within Psest_1696at 1803.428 kb on - strand, within Psest_1696at 1803.428 kb on - strand, within Psest_1696at 1803.428 kb on - strand, within Psest_1696at 1803.429 kb on + strand, within Psest_1696at 1803.482 kb on + strand, within Psest_1696at 1803.482 kb on + strand, within Psest_1696at 1803.577 kb on + strand, within Psest_1696at 1803.578 kb on - strand, within Psest_1696at 1803.578 kb on - strand, within Psest_1696at 1803.578 kb on - strand, within Psest_1696at 1803.806 kb on + strandat 1803.806 kb on + strandat 1803.806 kb on + strandat 1803.806 kb on + strandat 1803.806 kb on + strandat 1803.806 kb on + strandat 1803.807 kb on - strandat 1803.807 kb on - strandat 1803.807 kb on - strandat 1803.910 kb on + strandat 1804.062 kb on + strand, within Psest_1697at 1804.062 kb on + strand, within Psest_1697at 1804.062 kb on + strand, within Psest_1697at 1804.063 kb on - strand, within Psest_1697at 1804.063 kb on - strand, within Psest_1697at 1804.063 kb on - strand, within Psest_1697at 1804.063 kb on - strand, within Psest_1697at 1804.063 kb on - strand, within Psest_1697at 1804.063 kb on - strand, within Psest_1697at 1804.074 kb on + strand, within Psest_1697at 1804.075 kb on - strand, within Psest_1697at 1804.101 kb on + strand, within Psest_1697at 1804.102 kb on - strand, within Psest_1697at 1804.113 kb on + strand, within Psest_1697at 1804.113 kb on + strand, within Psest_1697at 1804.113 kb on + strand, within Psest_1697at 1804.114 kb on - strand, within Psest_1697at 1804.114 kb on - strand, within Psest_1697at 1804.114 kb on - strand, within Psest_1697at 1804.123 kb on + strand, within Psest_1697at 1804.124 kb on - strand, within Psest_1697at 1804.128 kb on - strand, within Psest_1697at 1804.155 kb on + strand, within Psest_1697at 1804.155 kb on + strand, within Psest_1697at 1804.155 kb on + strand, within Psest_1697at 1804.155 kb on + strand, within Psest_1697at 1804.156 kb on - strand, within Psest_1697at 1804.156 kb on - strand, within Psest_1697at 1804.156 kb on - strand, within Psest_1697at 1804.156 kb on - strand, within Psest_1697at 1804.156 kb on - strand, within Psest_1697at 1804.156 kb on - strand, within Psest_1697at 1804.159 kb on + strand, within Psest_1697at 1804.159 kb on + strand, within Psest_1697at 1804.159 kb on + strand, within Psest_1697at 1804.160 kb on - strand, within Psest_1697at 1804.160 kb on - strand, within Psest_1697at 1804.160 kb on - strand, within Psest_1697at 1804.160 kb on - strand, within Psest_1697at 1804.551 kb on + strand, within Psest_1697at 1804.551 kb on + strand, within Psest_1697at 1804.551 kb on + strand, within Psest_1697at 1804.551 kb on + strand, within Psest_1697at 1804.551 kb on + strand, within Psest_1697at 1804.551 kb on + strand, within Psest_1697at 1804.551 kb on + strand, within Psest_1697at 1804.552 kb on - strand, within Psest_1697at 1804.552 kb on - strand, within Psest_1697at 1804.552 kb on - strand, within Psest_1697at 1804.552 kb on - strand, within Psest_1697at 1804.552 kb on - strand, within Psest_1697at 1804.553 kb on + strand, within Psest_1697at 1804.553 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.555 kb on + strand, within Psest_1697at 1804.556 kb on - strand, within Psest_1697at 1804.556 kb on - strand, within Psest_1697at 1804.556 kb on - strand, within Psest_1697at 1804.556 kb on - strand, within Psest_1697at 1804.556 kb on - strand, within Psest_1697at 1804.556 kb on - strand, within Psest_1697at 1804.556 kb on - strand, within Psest_1697at 1804.556 kb on - strand, within Psest_1697at 1804.584 kb on + strand, within Psest_1697at 1804.746 kb on + strand, within Psest_1697at 1804.813 kb on + strand, within Psest_1697at 1804.813 kb on + strand, within Psest_1697at 1804.887 kb on + strand, within Psest_1697at 1804.887 kb on + strand, within Psest_1697at 1805.052 kb on + strand, within Psest_1697at 1805.052 kb on + strand, within Psest_1697at 1805.052 kb on + strand, within Psest_1697at 1805.052 kb on + strand, within Psest_1697at 1805.052 kb on + strand, within Psest_1697at 1805.052 kb on + strand, within Psest_1697at 1805.053 kb on - strand, within Psest_1697at 1805.053 kb on - strand, within Psest_1697at 1805.080 kb on + strandat 1805.081 kb on - strandat 1805.081 kb on - strandat 1805.262 kb on + strandat 1805.262 kb on + strandat 1805.263 kb on - strandat 1805.268 kb on + strandat 1805.268 kb on + strandat 1805.284 kb on + strandat 1805.284 kb on + strandat 1805.329 kb on + strandat 1805.329 kb on + strandat 1805.330 kb on - strandat 1805.337 kb on + strandat 1805.337 kb on + strandat 1805.338 kb on - strandat 1805.338 kb on - strandat 1805.338 kb on - strandat 1805.338 kb on - strandat 1805.338 kb on - strandat 1805.397 kb on + strandat 1805.398 kb on - strandat 1805.398 kb on - strandat 1805.398 kb on - strandat 1805.483 kb on + strandat 1805.484 kb on - strandat 1805.484 kb on - strandat 1805.484 kb on - strandat 1805.940 kb on + strand, within Psest_1699at 1805.941 kb on - strand, within Psest_1699at 1806.093 kb on - strand, within Psest_1699

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic; cobalt stress sample1
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1,802,900 + -1.8
1,802,901 - +0.4
1,802,901 - -0.9
1,802,918 + +0.2
1,802,918 + -1.1
1,802,918 + -1.9
1,802,919 - +0.2
1,802,919 - +1.5
1,803,026 + Psest_1696 0.15 +0.1
1,803,026 + Psest_1696 0.15 -1.8
1,803,026 + Psest_1696 0.15 -0.0
1,803,026 + Psest_1696 0.15 +0.2
1,803,026 + Psest_1696 0.15 +0.8
1,803,026 + Psest_1696 0.15 -0.8
1,803,026 + Psest_1696 0.15 +0.4
1,803,026 + Psest_1696 0.15 -2.2
1,803,026 + Psest_1696 0.15 +0.6
1,803,027 - Psest_1696 0.15 -0.3
1,803,027 - Psest_1696 0.15 +0.9
1,803,027 - Psest_1696 0.15 +1.5
1,803,027 - Psest_1696 0.15 -1.5
1,803,208 + Psest_1696 0.38 +0.2
1,803,208 + Psest_1696 0.38 +1.2
1,803,214 + Psest_1696 0.39 -1.0
1,803,286 - Psest_1696 0.48 +0.8
1,803,286 - Psest_1696 0.48 +0.9
1,803,338 + Psest_1696 0.54 +0.2
1,803,338 + Psest_1696 0.54 -2.1
1,803,338 + Psest_1696 0.54 +1.6
1,803,427 + Psest_1696 0.66 -0.0
1,803,427 + Psest_1696 0.66 -0.0
1,803,427 + Psest_1696 0.66 -0.2
1,803,427 + Psest_1696 0.66 +1.2
1,803,427 + Psest_1696 0.66 -0.4
1,803,427 + Psest_1696 0.66 -1.2
1,803,427 + Psest_1696 0.66 -0.6
1,803,427 + Psest_1696 0.66 -0.5
1,803,427 + Psest_1696 0.66 -0.2
1,803,427 + Psest_1696 0.66 -1.1
1,803,427 + Psest_1696 0.66 -0.2
1,803,428 - Psest_1696 0.66 -0.9
1,803,428 - Psest_1696 0.66 +2.5
1,803,428 - Psest_1696 0.66 +3.1
1,803,428 - Psest_1696 0.66 -2.2
1,803,428 - Psest_1696 0.66 +1.8
1,803,428 - Psest_1696 0.66 -0.1
1,803,429 + Psest_1696 0.66 -0.6
1,803,482 + Psest_1696 0.73 +0.2
1,803,482 + Psest_1696 0.73 +0.1
1,803,577 + Psest_1696 0.85 -1.0
1,803,578 - Psest_1696 0.85 +0.9
1,803,578 - Psest_1696 0.85 +0.7
1,803,578 - Psest_1696 0.85 +0.2
1,803,806 + -0.3
1,803,806 + +0.2
1,803,806 + -1.1
1,803,806 + -2.1
1,803,806 + -0.3
1,803,806 + +2.0
1,803,807 - -2.8
1,803,807 - -0.4
1,803,807 - -1.0
1,803,910 + -0.1
1,804,062 + Psest_1697 0.18 -1.8
1,804,062 + Psest_1697 0.18 -2.5
1,804,062 + Psest_1697 0.18 -1.8
1,804,063 - Psest_1697 0.18 +0.6
1,804,063 - Psest_1697 0.18 +0.2
1,804,063 - Psest_1697 0.18 +0.5
1,804,063 - Psest_1697 0.18 -1.5
1,804,063 - Psest_1697 0.18 +1.1
1,804,063 - Psest_1697 0.18 +0.5
1,804,074 + Psest_1697 0.19 -0.2
1,804,075 - Psest_1697 0.19 +0.5
1,804,101 + Psest_1697 0.21 +1.1
1,804,102 - Psest_1697 0.21 -0.9
1,804,113 + Psest_1697 0.22 -1.2
1,804,113 + Psest_1697 0.22 +0.9
1,804,113 + Psest_1697 0.22 +0.8
1,804,114 - Psest_1697 0.22 -1.1
1,804,114 - Psest_1697 0.22 -0.6
1,804,114 - Psest_1697 0.22 -1.4
1,804,123 + Psest_1697 0.23 +0.2
1,804,124 - Psest_1697 0.23 +0.2
1,804,128 - Psest_1697 0.23 -3.0
1,804,155 + Psest_1697 0.25 +1.8
1,804,155 + Psest_1697 0.25 +1.2
1,804,155 + Psest_1697 0.25 -0.2
1,804,155 + Psest_1697 0.25 +0.3
1,804,156 - Psest_1697 0.25 -0.3
1,804,156 - Psest_1697 0.25 +1.2
1,804,156 - Psest_1697 0.25 +1.4
1,804,156 - Psest_1697 0.25 -4.1
1,804,156 - Psest_1697 0.25 +0.6
1,804,156 - Psest_1697 0.25 -0.3
1,804,159 + Psest_1697 0.25 -0.1
1,804,159 + Psest_1697 0.25 +0.1
1,804,159 + Psest_1697 0.25 -1.3
1,804,160 - Psest_1697 0.25 -1.0
1,804,160 - Psest_1697 0.25 -0.5
1,804,160 - Psest_1697 0.25 -1.1
1,804,160 - Psest_1697 0.25 +1.0
1,804,551 + Psest_1697 0.53 +0.3
1,804,551 + Psest_1697 0.53 -0.6
1,804,551 + Psest_1697 0.53 -2.0
1,804,551 + Psest_1697 0.53 -1.2
1,804,551 + Psest_1697 0.53 -1.1
1,804,551 + Psest_1697 0.53 -2.2
1,804,551 + Psest_1697 0.53 +0.1
1,804,552 - Psest_1697 0.53 +0.2
1,804,552 - Psest_1697 0.53 +0.6
1,804,552 - Psest_1697 0.53 -1.3
1,804,552 - Psest_1697 0.53 +0.4
1,804,552 - Psest_1697 0.53 +0.5
1,804,553 + Psest_1697 0.53 +0.8
1,804,553 + Psest_1697 0.53 -3.1
1,804,555 + Psest_1697 0.54 -2.1
1,804,555 + Psest_1697 0.54 +0.2
1,804,555 + Psest_1697 0.54 -0.2
1,804,555 + Psest_1697 0.54 -0.4
1,804,555 + Psest_1697 0.54 +0.2
1,804,555 + Psest_1697 0.54 -0.8
1,804,555 + Psest_1697 0.54 -0.7
1,804,555 + Psest_1697 0.54 -0.6
1,804,555 + Psest_1697 0.54 -1.4
1,804,555 + Psest_1697 0.54 -1.3
1,804,555 + Psest_1697 0.54 -0.4
1,804,555 + Psest_1697 0.54 -0.0
1,804,555 + Psest_1697 0.54 -2.1
1,804,555 + Psest_1697 0.54 -1.8
1,804,555 + Psest_1697 0.54 -0.1
1,804,555 + Psest_1697 0.54 -2.1
1,804,555 + Psest_1697 0.54 -0.9
1,804,555 + Psest_1697 0.54 -2.1
1,804,555 + Psest_1697 0.54 -0.2
1,804,555 + Psest_1697 0.54 +0.1
1,804,556 - Psest_1697 0.54 -1.0
1,804,556 - Psest_1697 0.54 -1.0
1,804,556 - Psest_1697 0.54 -1.4
1,804,556 - Psest_1697 0.54 +0.8
1,804,556 - Psest_1697 0.54 +0.0
1,804,556 - Psest_1697 0.54 -0.3
1,804,556 - Psest_1697 0.54 -0.4
1,804,556 - Psest_1697 0.54 -1.4
1,804,584 + Psest_1697 0.56 -0.5
1,804,746 + Psest_1697 0.67 -0.5
1,804,813 + Psest_1697 0.72 -0.0
1,804,813 + Psest_1697 0.72 -0.4
1,804,887 + Psest_1697 0.77 -0.8
1,804,887 + Psest_1697 0.77 +0.1
1,805,052 + Psest_1697 0.89 +0.4
1,805,052 + Psest_1697 0.89 +2.0
1,805,052 + Psest_1697 0.89 -0.6
1,805,052 + Psest_1697 0.89 +0.2
1,805,052 + Psest_1697 0.89 -0.4
1,805,052 + Psest_1697 0.89 -0.1
1,805,053 - Psest_1697 0.89 -1.8
1,805,053 - Psest_1697 0.89 +1.7
1,805,080 + +1.2
1,805,081 - -1.8
1,805,081 - +0.8
1,805,262 + +2.0
1,805,262 + +0.4
1,805,263 - -0.1
1,805,268 + +0.8
1,805,268 + -0.4
1,805,284 + -1.1
1,805,284 + +0.2
1,805,329 + +0.4
1,805,329 + +0.5
1,805,330 - +0.7
1,805,337 + +0.8
1,805,337 + +1.0
1,805,338 - -0.6
1,805,338 - +1.0
1,805,338 - -1.2
1,805,338 - +0.2
1,805,338 - +0.1
1,805,397 + -1.2
1,805,398 - +1.1
1,805,398 - +0.9
1,805,398 - +1.0
1,805,483 + +0.2
1,805,484 - -0.0
1,805,484 - -0.2
1,805,484 - +0.6
1,805,940 + Psest_1699 0.46 -0.2
1,805,941 - Psest_1699 0.46 -0.1
1,806,093 - Psest_1699 0.59 +0.4

Or see this region's nucleotide sequence