Experiment: Lactate-nitrate; anaerobic sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0752 and Psest_0753 are separated by 267 nucleotides Psest_0753 and Psest_0754 are separated by 88 nucleotides Psest_0754 and Psest_0755 are separated by 92 nucleotides
Psest_0752: Psest_0752 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 823,433 to 824,422
_0752
Psest_0753: Psest_0753 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 824,690 to 825,814
_0753
Psest_0754: Psest_0754 - Predicted transcriptional regulators, at 825,903 to 826,208
_0754
Psest_0755: Psest_0755 - Bacterial regulatory helix-turn-helix proteins, AraC family., at 826,301 to 827,098
_0755
Position (kb) 824
825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 823.950 kb on + strand, within Psest_0752 at 823.950 kb on + strand, within Psest_0752 at 823.950 kb on + strand, within Psest_0752 at 823.950 kb on + strand, within Psest_0752 at 823.950 kb on + strand, within Psest_0752 at 823.950 kb on + strand, within Psest_0752 at 823.951 kb on - strand, within Psest_0752 at 823.951 kb on - strand, within Psest_0752 at 823.951 kb on - strand, within Psest_0752 at 823.951 kb on - strand, within Psest_0752 at 823.951 kb on - strand, within Psest_0752 at 823.990 kb on - strand, within Psest_0752 at 824.296 kb on - strand, within Psest_0752 at 824.296 kb on - strand, within Psest_0752 at 824.388 kb on + strand at 824.388 kb on + strand at 824.512 kb on + strand at 824.512 kb on + strand at 824.513 kb on - strand at 824.513 kb on - strand at 824.513 kb on - strand at 824.513 kb on - strand at 824.513 kb on - strand at 824.513 kb on - strand at 824.699 kb on - strand at 824.710 kb on + strand at 824.710 kb on + strand at 824.710 kb on + strand at 824.711 kb on - strand at 824.711 kb on - strand at 824.739 kb on + strand at 824.740 kb on - strand at 824.743 kb on + strand at 824.744 kb on - strand at 824.744 kb on - strand at 824.822 kb on + strand, within Psest_0753 at 824.822 kb on + strand, within Psest_0753 at 824.822 kb on + strand, within Psest_0753 at 824.822 kb on + strand, within Psest_0753 at 824.823 kb on - strand, within Psest_0753 at 824.823 kb on - strand, within Psest_0753 at 824.826 kb on - strand, within Psest_0753 at 824.826 kb on - strand, within Psest_0753 at 824.894 kb on + strand, within Psest_0753 at 824.894 kb on + strand, within Psest_0753 at 824.895 kb on - strand, within Psest_0753 at 825.182 kb on + strand, within Psest_0753 at 825.182 kb on + strand, within Psest_0753 at 825.183 kb on - strand, within Psest_0753 at 825.302 kb on + strand, within Psest_0753 at 825.334 kb on + strand, within Psest_0753 at 825.334 kb on + strand, within Psest_0753 at 825.434 kb on + strand, within Psest_0753 at 825.434 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.470 kb on + strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.471 kb on - strand, within Psest_0753 at 825.512 kb on + strand, within Psest_0753 at 825.516 kb on + strand, within Psest_0753 at 825.516 kb on + strand, within Psest_0753 at 825.516 kb on + strand, within Psest_0753 at 825.517 kb on - strand, within Psest_0753 at 825.517 kb on - strand, within Psest_0753 at 825.608 kb on + strand, within Psest_0753 at 825.608 kb on + strand, within Psest_0753 at 825.608 kb on + strand, within Psest_0753 at 825.609 kb on - strand, within Psest_0753 at 825.609 kb on - strand, within Psest_0753 at 825.620 kb on + strand, within Psest_0753 at 825.620 kb on + strand, within Psest_0753 at 825.620 kb on + strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.621 kb on - strand, within Psest_0753 at 825.736 kb on + strand at 825.765 kb on - strand at 825.785 kb on + strand at 825.786 kb on - strand at 825.786 kb on - strand at 825.870 kb on + strand at 825.902 kb on + strand at 825.902 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.910 kb on + strand at 825.911 kb on - strand at 825.911 kb on - strand at 825.911 kb on - strand at 825.911 kb on - strand at 826.086 kb on + strand, within Psest_0754 at 826.086 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.146 kb on + strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.147 kb on - strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.149 kb on + strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.150 kb on - strand, within Psest_0754 at 826.493 kb on + strand, within Psest_0755 at 826.493 kb on + strand, within Psest_0755 at 826.493 kb on + strand, within Psest_0755 at 826.493 kb on + strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.494 kb on - strand, within Psest_0755 at 826.598 kb on + strand, within Psest_0755 at 826.598 kb on + strand, within Psest_0755 at 826.598 kb on + strand, within Psest_0755 at 826.599 kb on - strand, within Psest_0755 at 826.599 kb on - strand, within Psest_0755 at 826.744 kb on + strand, within Psest_0755 at 826.745 kb on - strand, within Psest_0755 at 826.745 kb on - strand, within Psest_0755 at 826.745 kb on - strand, within Psest_0755
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic sample3 remove 823,950 + Psest_0752 0.52 -1.1 823,950 + Psest_0752 0.52 +0.2 823,950 + Psest_0752 0.52 +0.5 823,950 + Psest_0752 0.52 -0.8 823,950 + Psest_0752 0.52 +0.8 823,950 + Psest_0752 0.52 -0.1 823,951 - Psest_0752 0.52 +0.4 823,951 - Psest_0752 0.52 -0.5 823,951 - Psest_0752 0.52 -2.9 823,951 - Psest_0752 0.52 -1.8 823,951 - Psest_0752 0.52 +0.5 823,990 - Psest_0752 0.56 +0.3 824,296 - Psest_0752 0.87 -0.3 824,296 - Psest_0752 0.87 +1.1 824,388 + +0.5 824,388 + -0.5 824,512 + -1.9 824,512 + -0.6 824,513 - +1.2 824,513 - +0.5 824,513 - +0.2 824,513 - -0.1 824,513 - +0.4 824,513 - +0.3 824,699 - -1.3 824,710 + -0.9 824,710 + +1.3 824,710 + -0.4 824,711 - +1.0 824,711 - +0.5 824,739 + -1.3 824,740 - -1.3 824,743 + +1.5 824,744 - -0.0 824,744 - +1.4 824,822 + Psest_0753 0.12 -0.2 824,822 + Psest_0753 0.12 +0.6 824,822 + Psest_0753 0.12 -1.3 824,822 + Psest_0753 0.12 -0.0 824,823 - Psest_0753 0.12 -0.5 824,823 - Psest_0753 0.12 +0.6 824,826 - Psest_0753 0.12 +2.4 824,826 - Psest_0753 0.12 +0.5 824,894 + Psest_0753 0.18 +0.2 824,894 + Psest_0753 0.18 +0.9 824,895 - Psest_0753 0.18 -1.3 825,182 + Psest_0753 0.44 -0.1 825,182 + Psest_0753 0.44 +0.1 825,183 - Psest_0753 0.44 -0.8 825,302 + Psest_0753 0.54 +0.7 825,334 + Psest_0753 0.57 -1.0 825,334 + Psest_0753 0.57 +1.4 825,434 + Psest_0753 0.66 +0.1 825,434 + Psest_0753 0.66 +0.5 825,470 + Psest_0753 0.69 +1.1 825,470 + Psest_0753 0.69 -0.0 825,470 + Psest_0753 0.69 -0.3 825,470 + Psest_0753 0.69 -0.1 825,470 + Psest_0753 0.69 +1.0 825,471 - Psest_0753 0.69 +1.0 825,471 - Psest_0753 0.69 +0.0 825,471 - Psest_0753 0.69 -0.1 825,471 - Psest_0753 0.69 +0.1 825,512 + Psest_0753 0.73 +0.5 825,516 + Psest_0753 0.73 +0.7 825,516 + Psest_0753 0.73 +0.8 825,516 + Psest_0753 0.73 +2.3 825,517 - Psest_0753 0.74 -1.4 825,517 - Psest_0753 0.74 -0.2 825,608 + Psest_0753 0.82 +0.5 825,608 + Psest_0753 0.82 +1.2 825,608 + Psest_0753 0.82 +2.6 825,609 - Psest_0753 0.82 +2.4 825,609 - Psest_0753 0.82 -0.5 825,620 + Psest_0753 0.83 -0.1 825,620 + Psest_0753 0.83 +0.1 825,620 + Psest_0753 0.83 +0.2 825,621 - Psest_0753 0.83 -0.8 825,621 - Psest_0753 0.83 -0.5 825,621 - Psest_0753 0.83 +0.9 825,621 - Psest_0753 0.83 +0.3 825,621 - Psest_0753 0.83 -0.1 825,736 + +2.5 825,765 - +1.0 825,785 + -0.2 825,786 - -0.5 825,786 - +0.2 825,870 + +0.5 825,902 + -0.1 825,902 + -1.5 825,910 + -0.2 825,910 + -0.2 825,910 + +0.1 825,910 + -1.2 825,910 + -0.4 825,910 + +0.3 825,910 + -0.6 825,910 + +0.6 825,910 + -0.4 825,910 + -0.1 825,911 - +1.2 825,911 - +0.1 825,911 - -0.4 825,911 - +0.3 826,086 + Psest_0754 0.60 -0.2 826,086 + Psest_0754 0.60 -0.5 826,146 + Psest_0754 0.79 +1.1 826,146 + Psest_0754 0.79 -1.2 826,146 + Psest_0754 0.79 +0.5 826,146 + Psest_0754 0.79 -2.9 826,147 - Psest_0754 0.80 -0.8 826,147 - Psest_0754 0.80 +2.2 826,147 - Psest_0754 0.80 +0.1 826,147 - Psest_0754 0.80 +0.4 826,147 - Psest_0754 0.80 +1.4 826,149 + Psest_0754 0.80 +1.5 826,149 + Psest_0754 0.80 +1.1 826,149 + Psest_0754 0.80 -1.8 826,149 + Psest_0754 0.80 +2.7 826,149 + Psest_0754 0.80 -0.2 826,149 + Psest_0754 0.80 +0.7 826,149 + Psest_0754 0.80 -0.3 826,150 - Psest_0754 0.81 +1.5 826,150 - Psest_0754 0.81 +1.5 826,150 - Psest_0754 0.81 -1.2 826,150 - Psest_0754 0.81 +1.3 826,150 - Psest_0754 0.81 +0.5 826,150 - Psest_0754 0.81 -0.0 826,150 - Psest_0754 0.81 +0.0 826,150 - Psest_0754 0.81 +0.8 826,493 + Psest_0755 0.24 -2.1 826,493 + Psest_0755 0.24 +1.4 826,493 + Psest_0755 0.24 +0.5 826,493 + Psest_0755 0.24 +0.5 826,494 - Psest_0755 0.24 +1.0 826,494 - Psest_0755 0.24 -0.5 826,494 - Psest_0755 0.24 +0.0 826,494 - Psest_0755 0.24 -0.4 826,494 - Psest_0755 0.24 +0.1 826,494 - Psest_0755 0.24 +0.4 826,494 - Psest_0755 0.24 +1.0 826,494 - Psest_0755 0.24 -2.1 826,494 - Psest_0755 0.24 +0.6 826,598 + Psest_0755 0.37 -0.9 826,598 + Psest_0755 0.37 -0.4 826,598 + Psest_0755 0.37 +0.5 826,599 - Psest_0755 0.37 +0.2 826,599 - Psest_0755 0.37 +0.6 826,744 + Psest_0755 0.56 -1.2 826,745 - Psest_0755 0.56 -0.8 826,745 - Psest_0755 0.56 +0.5 826,745 - Psest_0755 0.56 -0.1
Or see this region's nucleotide sequence