Experiment: Lactate-nitrate; anaerobic sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0835 and Psest_0836 are separated by 14 nucleotides Psest_0836 and Psest_0837 overlap by 7 nucleotides Psest_0837 and Psest_0838 are separated by 180 nucleotides Psest_0838 and Psest_0839 are separated by 96 nucleotides
Psest_0835: Psest_0835 - Collagenase and related proteases, at 906,277 to 907,272
_0835
Psest_0836: Psest_0836 - Collagenase and related proteases, at 907,287 to 908,177
_0836
Psest_0837: Psest_0837 - Putative lipid carrier protein, at 908,171 to 908,665
_0837
Psest_0838: Psest_0838 - Uncharacterized conserved protein, at 908,846 to 909,232
_0838
Psest_0839: Psest_0839 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 909,329 to 910,006
_0839
Position (kb) 908
909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 907.317 kb on + strand at 907.317 kb on + strand at 907.317 kb on + strand at 907.318 kb on - strand at 907.383 kb on + strand, within Psest_0836 at 907.383 kb on + strand, within Psest_0836 at 907.384 kb on - strand, within Psest_0836 at 907.644 kb on + strand, within Psest_0836 at 907.644 kb on + strand, within Psest_0836 at 907.644 kb on + strand, within Psest_0836 at 907.645 kb on - strand, within Psest_0836 at 907.813 kb on - strand, within Psest_0836 at 907.813 kb on - strand, within Psest_0836 at 907.813 kb on - strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.056 kb on + strand, within Psest_0836 at 908.057 kb on - strand, within Psest_0836 at 908.057 kb on - strand, within Psest_0836 at 908.057 kb on - strand, within Psest_0836 at 908.171 kb on - strand at 908.171 kb on - strand at 908.319 kb on + strand, within Psest_0837 at 908.320 kb on - strand, within Psest_0837 at 908.320 kb on - strand, within Psest_0837 at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.764 kb on + strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.765 kb on - strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.842 kb on + strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 908.843 kb on - strand at 909.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic sample2 remove 907,317 + +0.8 907,317 + -1.3 907,317 + -1.1 907,318 - +0.4 907,383 + Psest_0836 0.11 +0.1 907,383 + Psest_0836 0.11 +1.4 907,384 - Psest_0836 0.11 -0.8 907,644 + Psest_0836 0.40 -0.4 907,644 + Psest_0836 0.40 -2.4 907,644 + Psest_0836 0.40 -0.8 907,645 - Psest_0836 0.40 -1.9 907,813 - Psest_0836 0.59 -1.2 907,813 - Psest_0836 0.59 -2.4 907,813 - Psest_0836 0.59 -2.1 908,056 + Psest_0836 0.86 -1.0 908,056 + Psest_0836 0.86 -0.8 908,056 + Psest_0836 0.86 -1.4 908,056 + Psest_0836 0.86 -0.6 908,056 + Psest_0836 0.86 -2.6 908,056 + Psest_0836 0.86 -1.4 908,057 - Psest_0836 0.86 -1.6 908,057 - Psest_0836 0.86 -1.1 908,057 - Psest_0836 0.86 -0.1 908,171 - -0.4 908,171 - -0.1 908,319 + Psest_0837 0.30 -2.0 908,320 - Psest_0837 0.30 -0.9 908,320 - Psest_0837 0.30 -1.3 908,764 + -0.6 908,764 + +2.2 908,764 + +0.2 908,764 + -1.1 908,764 + +0.3 908,764 + -0.2 908,764 + -1.4 908,764 + +0.7 908,765 - +0.7 908,765 - -0.1 908,765 - +0.2 908,765 - +0.7 908,765 - +1.0 908,765 - +0.4 908,765 - +0.9 908,765 - +2.2 908,765 - +1.9 908,765 - +0.8 908,842 + -0.5 908,842 + -0.2 908,842 + +0.2 908,842 + +0.1 908,842 + -0.7 908,842 + +1.2 908,843 - -0.6 908,843 - -0.1 908,843 - +1.4 908,843 - -0.5 908,843 - -3.6 908,843 - +0.9 908,843 - -2.7 909,202 - +0.0
Or see this region's nucleotide sequence