Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0828

Experiment: Lactate-nitrate; anaerobic sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0827 and Psest_0828 are separated by 82 nucleotidesPsest_0828 and Psest_0829 are separated by 401 nucleotidesPsest_0829 and Psest_0830 are separated by 67 nucleotides Psest_0827: Psest_0827 - Nitric oxide reductase large subunit, at 898,063 to 899,487 _0827 Psest_0828: Psest_0828 - Nitric oxide reductase activation protein, at 899,570 to 901,411 _0828 Psest_0829: Psest_0829 - hypothetical protein, at 901,813 to 902,004 _0829 Psest_0830: Psest_0830 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 902,072 to 902,755 _0830 Position (kb) 899 900 901 902Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 898.630 kb on + strand, within Psest_0827at 898.630 kb on + strand, within Psest_0827at 898.630 kb on + strand, within Psest_0827at 898.630 kb on + strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.663 kb on + strand, within Psest_0827at 898.663 kb on + strand, within Psest_0827at 898.663 kb on + strand, within Psest_0827at 898.664 kb on - strand, within Psest_0827at 898.664 kb on - strand, within Psest_0827at 898.664 kb on - strand, within Psest_0827at 898.786 kb on + strand, within Psest_0827at 898.786 kb on + strand, within Psest_0827at 898.787 kb on - strand, within Psest_0827at 898.787 kb on - strand, within Psest_0827at 899.068 kb on + strand, within Psest_0827at 899.068 kb on + strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.069 kb on - strand, within Psest_0827at 899.071 kb on + strand, within Psest_0827at 899.071 kb on + strand, within Psest_0827at 899.071 kb on + strand, within Psest_0827at 899.071 kb on + strand, within Psest_0827at 899.119 kb on + strand, within Psest_0827at 899.119 kb on + strand, within Psest_0827at 899.119 kb on + strand, within Psest_0827at 899.120 kb on - strand, within Psest_0827at 899.120 kb on - strand, within Psest_0827at 899.120 kb on - strand, within Psest_0827at 899.129 kb on - strand, within Psest_0827at 899.422 kb on + strandat 899.422 kb on + strandat 899.422 kb on + strandat 899.422 kb on + strandat 899.422 kb on + strandat 899.423 kb on - strandat 899.428 kb on + strandat 899.429 kb on - strandat 899.429 kb on - strandat 899.429 kb on - strandat 899.462 kb on + strandat 899.578 kb on + strandat 899.578 kb on + strandat 899.868 kb on - strand, within Psest_0828at 900.990 kb on + strand, within Psest_0828at 901.085 kb on + strand, within Psest_0828at 901.086 kb on - strand, within Psest_0828at 901.088 kb on + strand, within Psest_0828at 901.088 kb on + strand, within Psest_0828at 901.088 kb on + strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.089 kb on - strand, within Psest_0828at 901.203 kb on - strand, within Psest_0828at 901.203 kb on - strand, within Psest_0828at 901.316 kb on + strandat 901.316 kb on + strandat 901.316 kb on + strandat 901.316 kb on + strandat 901.316 kb on + strandat 901.388 kb on + strandat 901.388 kb on + strandat 901.409 kb on + strandat 901.510 kb on - strandat 901.549 kb on + strandat 901.550 kb on - strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.569 kb on + strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.570 kb on - strandat 901.592 kb on + strandat 901.592 kb on + strandat 901.592 kb on + strandat 901.592 kb on + strandat 901.592 kb on + strandat 901.592 kb on + strandat 901.593 kb on - strandat 901.593 kb on - strandat 901.593 kb on - strandat 901.593 kb on - strandat 901.593 kb on - strandat 901.686 kb on - strandat 901.686 kb on - strandat 901.720 kb on - strandat 901.793 kb on - strandat 901.823 kb on + strandat 901.824 kb on - strandat 901.824 kb on - strandat 901.824 kb on - strandat 902.131 kb on + strandat 902.132 kb on - strandat 902.273 kb on + strand, within Psest_0830at 902.273 kb on + strand, within Psest_0830at 902.273 kb on + strand, within Psest_0830at 902.273 kb on + strand, within Psest_0830at 902.274 kb on - strand, within Psest_0830at 902.278 kb on - strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.409 kb on + strand, within Psest_0830at 902.410 kb on - strand, within Psest_0830at 902.410 kb on - strand, within Psest_0830at 902.410 kb on - strand, within Psest_0830

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic sample2
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898,630 + Psest_0827 0.40 -1.1
898,630 + Psest_0827 0.40 -0.6
898,630 + Psest_0827 0.40 -0.6
898,630 + Psest_0827 0.40 +0.4
898,631 - Psest_0827 0.40 -2.9
898,631 - Psest_0827 0.40 -1.5
898,631 - Psest_0827 0.40 -1.3
898,631 - Psest_0827 0.40 -1.1
898,660 + Psest_0827 0.42 -0.1
898,660 + Psest_0827 0.42 -2.7
898,660 + Psest_0827 0.42 -0.6
898,660 + Psest_0827 0.42 -2.0
898,660 + Psest_0827 0.42 -2.3
898,660 + Psest_0827 0.42 -0.6
898,660 + Psest_0827 0.42 -0.9
898,660 + Psest_0827 0.42 -2.3
898,660 + Psest_0827 0.42 -1.7
898,660 + Psest_0827 0.42 -3.6
898,660 + Psest_0827 0.42 -1.9
898,660 + Psest_0827 0.42 -2.9
898,660 + Psest_0827 0.42 -2.4
898,660 + Psest_0827 0.42 -2.9
898,660 + Psest_0827 0.42 -1.0
898,660 + Psest_0827 0.42 -0.6
898,660 + Psest_0827 0.42 -0.6
898,660 + Psest_0827 0.42 -3.4
898,660 + Psest_0827 0.42 -1.1
898,660 + Psest_0827 0.42 -1.7
898,661 - Psest_0827 0.42 -2.1
898,661 - Psest_0827 0.42 -3.0
898,661 - Psest_0827 0.42 -1.7
898,661 - Psest_0827 0.42 -0.4
898,661 - Psest_0827 0.42 -1.5
898,661 - Psest_0827 0.42 -2.4
898,661 - Psest_0827 0.42 -1.9
898,661 - Psest_0827 0.42 -1.0
898,661 - Psest_0827 0.42 -3.0
898,661 - Psest_0827 0.42 -1.8
898,661 - Psest_0827 0.42 -2.1
898,661 - Psest_0827 0.42 -2.6
898,661 - Psest_0827 0.42 -0.6
898,663 + Psest_0827 0.42 -1.6
898,663 + Psest_0827 0.42 -1.4
898,663 + Psest_0827 0.42 -1.4
898,664 - Psest_0827 0.42 -3.1
898,664 - Psest_0827 0.42 -0.6
898,664 - Psest_0827 0.42 -0.6
898,786 + Psest_0827 0.51 -1.7
898,786 + Psest_0827 0.51 -3.7
898,787 - Psest_0827 0.51 -1.8
898,787 - Psest_0827 0.51 -3.5
899,068 + Psest_0827 0.71 -1.3
899,068 + Psest_0827 0.71 -2.0
899,069 - Psest_0827 0.71 -1.6
899,069 - Psest_0827 0.71 -2.1
899,069 - Psest_0827 0.71 -1.7
899,069 - Psest_0827 0.71 -0.8
899,069 - Psest_0827 0.71 -2.9
899,069 - Psest_0827 0.71 -0.6
899,071 + Psest_0827 0.71 -0.6
899,071 + Psest_0827 0.71 -1.6
899,071 + Psest_0827 0.71 -2.4
899,071 + Psest_0827 0.71 -3.3
899,119 + Psest_0827 0.74 -2.0
899,119 + Psest_0827 0.74 -2.4
899,119 + Psest_0827 0.74 -2.0
899,120 - Psest_0827 0.74 -2.1
899,120 - Psest_0827 0.74 -2.5
899,120 - Psest_0827 0.74 -1.4
899,129 - Psest_0827 0.75 -1.6
899,422 + -1.0
899,422 + -2.4
899,422 + -3.3
899,422 + -1.9
899,422 + -2.4
899,423 - -0.1
899,428 + -0.9
899,429 - -0.6
899,429 - -0.6
899,429 - -1.1
899,462 + -0.0
899,578 + -1.1
899,578 + -1.6
899,868 - Psest_0828 0.16 -2.8
900,990 + Psest_0828 0.77 -2.2
901,085 + Psest_0828 0.82 -2.0
901,086 - Psest_0828 0.82 -2.3
901,088 + Psest_0828 0.82 -2.7
901,088 + Psest_0828 0.82 -2.0
901,088 + Psest_0828 0.82 -1.0
901,089 - Psest_0828 0.82 -1.7
901,089 - Psest_0828 0.82 +0.4
901,089 - Psest_0828 0.82 -1.6
901,089 - Psest_0828 0.82 -0.9
901,089 - Psest_0828 0.82 -1.1
901,089 - Psest_0828 0.82 -1.0
901,203 - Psest_0828 0.89 -1.1
901,203 - Psest_0828 0.89 -4.0
901,316 + -1.9
901,316 + -2.7
901,316 + -1.6
901,316 + -0.1
901,316 + -3.0
901,388 + -1.4
901,388 + -2.1
901,409 + -0.4
901,510 - +0.8
901,549 + -1.6
901,550 - +1.4
901,569 + +0.2
901,569 + -0.4
901,569 + +2.3
901,569 + +0.4
901,569 + -0.4
901,569 + -1.6
901,569 + +0.5
901,569 + -0.7
901,569 + -0.1
901,570 - +1.0
901,570 - +1.2
901,570 - +1.0
901,570 - +0.2
901,570 - +0.4
901,570 - +0.7
901,570 - +0.8
901,592 + +2.6
901,592 + -0.6
901,592 + -1.2
901,592 + +0.7
901,592 + +0.3
901,592 + +0.9
901,593 - +0.2
901,593 - -1.0
901,593 - +0.2
901,593 - +0.3
901,593 - -0.1
901,686 - +1.1
901,686 - +0.0
901,720 - +0.1
901,793 - -0.2
901,823 + +0.5
901,824 - -1.6
901,824 - +0.2
901,824 - +0.6
902,131 + -0.1
902,132 - -0.6
902,273 + Psest_0830 0.29 -2.4
902,273 + Psest_0830 0.29 -0.9
902,273 + Psest_0830 0.29 +1.4
902,273 + Psest_0830 0.29 +1.7
902,274 - Psest_0830 0.30 -0.1
902,278 - Psest_0830 0.30 -1.8
902,409 + Psest_0830 0.49 -0.7
902,409 + Psest_0830 0.49 -0.5
902,409 + Psest_0830 0.49 -3.2
902,409 + Psest_0830 0.49 -0.6
902,410 - Psest_0830 0.49 -0.6
902,410 - Psest_0830 0.49 -0.1
902,410 - Psest_0830 0.49 +1.4

Or see this region's nucleotide sequence