Experiment: Lactate-nitrate; anaerobic sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0817 and Psest_0818 are separated by 24 nucleotides Psest_0818 and Psest_0819 are separated by 146 nucleotides Psest_0819 and Psest_0820 are separated by 18 nucleotides Psest_0820 and Psest_0821 overlap by 4 nucleotides
Psest_0817: Psest_0817 - Ethylbenzene dehydrogenase., at 892,400 to 893,275
_0817
Psest_0818: Psest_0818 - hypothetical protein, at 893,300 to 893,446
_0818
Psest_0819: Psest_0819 - Cytochrome c551/c552, at 893,593 to 893,907
_0819
Psest_0820: Psest_0820 - hypothetical protein, at 893,926 to 894,267
_0820
Psest_0821: Psest_0821 - Cytochrome D1 heme domain., at 894,264 to 895,439
_0821
Position (kb) 893
894
895 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.964 kb on + strand, within Psest_0817 at 892.964 kb on + strand, within Psest_0817 at 892.965 kb on - strand, within Psest_0817 at 892.965 kb on - strand, within Psest_0817 at 892.967 kb on + strand, within Psest_0817 at 892.967 kb on + strand, within Psest_0817 at 892.967 kb on + strand, within Psest_0817 at 892.968 kb on - strand, within Psest_0817 at 892.968 kb on - strand, within Psest_0817 at 893.086 kb on + strand, within Psest_0817 at 893.086 kb on + strand, within Psest_0817 at 893.087 kb on - strand, within Psest_0817 at 893.087 kb on - strand, within Psest_0817 at 893.159 kb on + strand, within Psest_0817 at 893.159 kb on + strand, within Psest_0817 at 893.159 kb on + strand, within Psest_0817 at 893.392 kb on - strand, within Psest_0818 at 893.585 kb on + strand at 893.585 kb on + strand at 893.585 kb on + strand at 893.585 kb on + strand at 893.585 kb on + strand at 893.586 kb on - strand at 893.586 kb on - strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.591 kb on + strand at 893.592 kb on - strand at 893.592 kb on - strand at 893.592 kb on - strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.905 kb on + strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 893.906 kb on - strand at 894.047 kb on + strand, within Psest_0820 at 894.047 kb on + strand, within Psest_0820 at 894.047 kb on + strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.048 kb on - strand, within Psest_0820 at 894.483 kb on + strand, within Psest_0821 at 894.483 kb on + strand, within Psest_0821 at 894.483 kb on + strand, within Psest_0821 at 894.483 kb on + strand, within Psest_0821 at 894.484 kb on - strand, within Psest_0821 at 894.618 kb on + strand, within Psest_0821 at 894.618 kb on + strand, within Psest_0821 at 894.619 kb on - strand, within Psest_0821 at 894.619 kb on - strand, within Psest_0821 at 894.654 kb on - strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.756 kb on + strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.757 kb on - strand, within Psest_0821 at 894.852 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.885 kb on + strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 894.886 kb on - strand, within Psest_0821 at 895.002 kb on + strand, within Psest_0821 at 895.002 kb on + strand, within Psest_0821 at 895.210 kb on + strand, within Psest_0821 at 895.211 kb on - strand, within Psest_0821 at 895.211 kb on - strand, within Psest_0821
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic sample2 remove 892,931 + Psest_0817 0.61 +0.6 892,931 + Psest_0817 0.61 -1.9 892,931 + Psest_0817 0.61 -0.6 892,931 + Psest_0817 0.61 -0.7 892,931 + Psest_0817 0.61 -0.6 892,932 - Psest_0817 0.61 -1.7 892,932 - Psest_0817 0.61 +1.4 892,932 - Psest_0817 0.61 -0.7 892,932 - Psest_0817 0.61 -0.3 892,964 + Psest_0817 0.64 -0.5 892,964 + Psest_0817 0.64 +0.4 892,965 - Psest_0817 0.64 +0.4 892,965 - Psest_0817 0.64 -0.8 892,967 + Psest_0817 0.65 +0.4 892,967 + Psest_0817 0.65 -1.0 892,967 + Psest_0817 0.65 +1.7 892,968 - Psest_0817 0.65 -0.4 892,968 - Psest_0817 0.65 -4.0 893,086 + Psest_0817 0.78 +0.1 893,086 + Psest_0817 0.78 -2.6 893,087 - Psest_0817 0.78 -0.2 893,087 - Psest_0817 0.78 -1.1 893,159 + Psest_0817 0.87 -1.6 893,159 + Psest_0817 0.87 -1.4 893,159 + Psest_0817 0.87 -0.0 893,392 - Psest_0818 0.63 +0.0 893,585 + -1.3 893,585 + +1.4 893,585 + +1.0 893,585 + +1.4 893,585 + +0.4 893,586 - -0.2 893,586 - -0.9 893,591 + -0.4 893,591 + -0.4 893,591 + +0.4 893,591 + -0.7 893,591 + -0.6 893,592 - +0.3 893,592 - -1.0 893,592 - +0.4 893,905 + +1.0 893,905 + -1.5 893,905 + +3.5 893,905 + -1.9 893,905 + +0.2 893,905 + -0.6 893,906 - -1.0 893,906 - -0.8 893,906 - -0.9 893,906 - -1.6 893,906 - -1.7 893,906 - -1.0 893,906 - -0.6 894,047 + Psest_0820 0.35 -1.0 894,047 + Psest_0820 0.35 +0.3 894,047 + Psest_0820 0.35 -3.3 894,048 - Psest_0820 0.36 -0.6 894,048 - Psest_0820 0.36 -0.9 894,048 - Psest_0820 0.36 -0.4 894,048 - Psest_0820 0.36 -1.4 894,048 - Psest_0820 0.36 +0.1 894,483 + Psest_0821 0.19 +0.3 894,483 + Psest_0821 0.19 -0.4 894,483 + Psest_0821 0.19 -1.3 894,483 + Psest_0821 0.19 -0.3 894,484 - Psest_0821 0.19 +1.6 894,618 + Psest_0821 0.30 -0.7 894,618 + Psest_0821 0.30 -0.3 894,619 - Psest_0821 0.30 -2.4 894,619 - Psest_0821 0.30 -0.2 894,654 - Psest_0821 0.33 +0.8 894,756 + Psest_0821 0.42 -0.6 894,756 + Psest_0821 0.42 -2.1 894,756 + Psest_0821 0.42 +0.2 894,756 + Psest_0821 0.42 +0.4 894,756 + Psest_0821 0.42 -0.1 894,756 + Psest_0821 0.42 -0.4 894,757 - Psest_0821 0.42 -3.6 894,757 - Psest_0821 0.42 +0.3 894,757 - Psest_0821 0.42 -1.4 894,757 - Psest_0821 0.42 -1.2 894,852 + Psest_0821 0.50 -1.7 894,885 + Psest_0821 0.53 -0.6 894,885 + Psest_0821 0.53 +0.6 894,885 + Psest_0821 0.53 -0.3 894,885 + Psest_0821 0.53 -0.2 894,885 + Psest_0821 0.53 -1.5 894,885 + Psest_0821 0.53 -0.1 894,885 + Psest_0821 0.53 -1.1 894,886 - Psest_0821 0.53 -0.6 894,886 - Psest_0821 0.53 -0.1 894,886 - Psest_0821 0.53 -0.2 894,886 - Psest_0821 0.53 -2.0 894,886 - Psest_0821 0.53 -0.7 894,886 - Psest_0821 0.53 -0.2 894,886 - Psest_0821 0.53 -0.6 894,886 - Psest_0821 0.53 -0.1 894,886 - Psest_0821 0.53 -1.9 894,886 - Psest_0821 0.53 +0.2 894,886 - Psest_0821 0.53 -0.9 895,002 + Psest_0821 0.63 -0.1 895,002 + Psest_0821 0.63 -0.8 895,210 + Psest_0821 0.80 -0.1 895,211 - Psest_0821 0.81 -0.7 895,211 - Psest_0821 0.81 -0.9
Or see this region's nucleotide sequence