Experiment: Lactate-nitrate; anaerobic sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0607 and Psest_0608 are separated by 92 nucleotides Psest_0608 and Psest_0609 overlap by 4 nucleotides Psest_0609 and Psest_0610 overlap by 90 nucleotides
Psest_0607: Psest_0607 - Co/Zn/Cd efflux system component, at 658,058 to 658,948
_0607
Psest_0608: Psest_0608 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 659,041 to 659,445
_0608
Psest_0609: Psest_0609 - hypothetical protein, at 659,442 to 659,657
_0609
Psest_0610: Psest_0610 - heavy metal sensor kinase, at 659,568 to 660,941
_0610
Position (kb) 659
660 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 658.453 kb on - strand, within Psest_0607 at 658.453 kb on - strand, within Psest_0607 at 658.467 kb on + strand, within Psest_0607 at 658.575 kb on - strand, within Psest_0607 at 658.580 kb on + strand, within Psest_0607 at 658.581 kb on - strand, within Psest_0607 at 658.581 kb on - strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.587 kb on - strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.607 kb on - strand, within Psest_0607 at 658.739 kb on + strand, within Psest_0607 at 658.740 kb on - strand, within Psest_0607 at 658.849 kb on - strand, within Psest_0607 at 658.892 kb on - strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.005 kb on - strand at 659.005 kb on - strand at 659.058 kb on - strand at 659.066 kb on + strand at 659.066 kb on + strand at 659.067 kb on - strand at 659.067 kb on - strand at 659.069 kb on + strand at 659.069 kb on + strand at 659.070 kb on - strand at 659.070 kb on - strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.080 kb on - strand at 659.080 kb on - strand at 659.080 kb on - strand at 659.098 kb on + strand, within Psest_0608 at 659.098 kb on + strand, within Psest_0608 at 659.098 kb on + strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.155 kb on + strand, within Psest_0608 at 659.181 kb on - strand, within Psest_0608 at 659.245 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.272 kb on - strand, within Psest_0608 at 659.272 kb on - strand, within Psest_0608 at 659.371 kb on - strand, within Psest_0608 at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.533 kb on + strand, within Psest_0609 at 659.533 kb on + strand, within Psest_0609 at 659.697 kb on + strand at 659.697 kb on + strand at 659.697 kb on + strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.825 kb on + strand, within Psest_0610 at 659.835 kb on - strand, within Psest_0610 at 659.835 kb on - strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610 at 659.965 kb on + strand, within Psest_0610 at 659.965 kb on + strand, within Psest_0610 at 659.965 kb on + strand, within Psest_0610 at 659.965 kb on + strand, within Psest_0610 at 659.966 kb on - strand, within Psest_0610 at 659.966 kb on - strand, within Psest_0610 at 659.966 kb on - strand, within Psest_0610 at 659.973 kb on + strand, within Psest_0610 at 659.973 kb on + strand, within Psest_0610 at 659.973 kb on + strand, within Psest_0610 at 659.973 kb on + strand, within Psest_0610 at 659.973 kb on + strand, within Psest_0610 at 659.974 kb on - strand, within Psest_0610 at 659.994 kb on + strand, within Psest_0610 at 660.000 kb on + strand, within Psest_0610 at 660.001 kb on - strand, within Psest_0610 at 660.001 kb on - strand, within Psest_0610 at 660.165 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.258 kb on + strand, within Psest_0610 at 660.259 kb on - strand, within Psest_0610 at 660.324 kb on + strand, within Psest_0610 at 660.324 kb on + strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.325 kb on - strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.335 kb on + strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.336 kb on - strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.339 kb on + strand, within Psest_0610 at 660.340 kb on - strand, within Psest_0610 at 660.340 kb on - strand, within Psest_0610 at 660.345 kb on - strand, within Psest_0610 at 660.396 kb on + strand, within Psest_0610 at 660.504 kb on + strand, within Psest_0610 at 660.505 kb on - strand, within Psest_0610 at 660.505 kb on - strand, within Psest_0610 at 660.505 kb on - strand, within Psest_0610 at 660.592 kb on + strand, within Psest_0610 at 660.592 kb on + strand, within Psest_0610 at 660.592 kb on + strand, within Psest_0610
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic sample2 remove 658,453 - Psest_0607 0.44 +2.2 658,453 - Psest_0607 0.44 -0.9 658,467 + Psest_0607 0.46 +0.7 658,575 - Psest_0607 0.58 +0.2 658,580 + Psest_0607 0.59 -1.9 658,581 - Psest_0607 0.59 +1.0 658,581 - Psest_0607 0.59 +0.4 658,586 + Psest_0607 0.59 -1.0 658,586 + Psest_0607 0.59 -0.2 658,586 + Psest_0607 0.59 +0.5 658,586 + Psest_0607 0.59 +3.0 658,587 - Psest_0607 0.59 +2.1 658,606 + Psest_0607 0.62 +0.5 658,606 + Psest_0607 0.62 -0.9 658,606 + Psest_0607 0.62 +2.8 658,607 - Psest_0607 0.62 +0.2 658,739 + Psest_0607 0.76 -1.6 658,740 - Psest_0607 0.77 +1.2 658,849 - Psest_0607 0.89 +0.8 658,892 - -1.3 658,984 + -0.4 658,984 + -3.1 658,984 + +0.7 658,984 + -0.5 658,985 - -1.2 658,985 - +1.4 658,985 - -2.0 658,985 - +0.7 658,985 - -1.0 658,995 + +0.4 658,995 + -1.5 658,995 + -1.2 658,995 + +0.0 658,995 + -0.2 658,995 + +0.8 658,995 + -1.2 658,995 + -2.3 658,995 + -1.0 658,995 + -1.1 658,996 - -0.7 658,996 - -0.6 658,996 - -1.6 658,996 - -0.1 658,996 - -1.5 658,996 - +2.4 658,996 - -1.7 658,996 - +2.0 658,996 - -0.3 658,996 - -2.7 658,996 - +1.2 658,996 - +0.4 658,996 - -0.1 658,996 - +1.0 658,996 - +0.7 658,999 + +1.8 658,999 + -1.0 658,999 + -2.2 658,999 + +0.0 658,999 + -0.8 658,999 + +0.7 658,999 + -0.2 658,999 + +1.1 658,999 + -1.0 658,999 + +1.3 659,000 - -0.7 659,000 - +0.1 659,000 - +0.5 659,000 - -0.6 659,000 - -1.4 659,000 - -1.2 659,000 - -0.5 659,000 - +1.9 659,002 + -1.3 659,002 + -0.2 659,002 + +0.1 659,002 + -0.2 659,002 + -0.4 659,002 + +2.2 659,002 + +0.1 659,002 + +0.5 659,002 + -0.8 659,002 + -1.9 659,002 + -1.2 659,002 + -0.5 659,003 - +2.7 659,003 - -0.9 659,003 - -0.3 659,003 - -0.3 659,003 - +1.4 659,003 - -0.5 659,003 - +1.0 659,003 - -0.3 659,003 - -1.0 659,003 - +2.0 659,003 - -0.9 659,003 - -0.6 659,003 - -3.3 659,004 + -0.3 659,004 + +0.4 659,004 + +0.6 659,004 + +0.1 659,004 + -1.9 659,004 + -0.7 659,004 + -0.2 659,004 + +1.3 659,004 + -0.2 659,005 - -0.3 659,005 - -0.4 659,058 - -0.6 659,066 + +1.4 659,066 + -0.6 659,067 - +2.0 659,067 - +0.5 659,069 + -0.4 659,069 + +0.6 659,070 - +2.7 659,070 - -1.5 659,079 + +0.9 659,079 + +0.0 659,079 + -0.3 659,079 + -1.7 659,079 + -0.4 659,080 - +0.0 659,080 - -3.3 659,080 - -1.2 659,098 + Psest_0608 0.14 -0.4 659,098 + Psest_0608 0.14 -0.0 659,098 + Psest_0608 0.14 +0.4 659,099 - Psest_0608 0.14 -1.0 659,099 - Psest_0608 0.14 -1.7 659,099 - Psest_0608 0.14 -0.3 659,155 + Psest_0608 0.28 -0.7 659,181 - Psest_0608 0.35 -1.5 659,245 + Psest_0608 0.50 -1.2 659,271 + Psest_0608 0.57 -0.9 659,271 + Psest_0608 0.57 -0.6 659,271 + Psest_0608 0.57 -1.7 659,271 + Psest_0608 0.57 -0.6 659,272 - Psest_0608 0.57 -0.4 659,272 - Psest_0608 0.57 -0.7 659,371 - Psest_0608 0.81 -1.4 659,439 + +0.7 659,439 + +0.8 659,439 + -0.2 659,439 + +0.7 659,439 + -0.5 659,439 + +0.0 659,439 + -0.5 659,439 + +1.4 659,533 + Psest_0609 0.42 -0.7 659,533 + Psest_0609 0.42 -1.1 659,697 + -0.1 659,697 + -1.3 659,697 + +0.4 659,698 - +0.2 659,698 - -1.1 659,698 - +2.0 659,698 - -0.3 659,698 - -0.8 659,698 - -0.4 659,793 + Psest_0610 0.16 -1.7 659,793 + Psest_0610 0.16 -1.4 659,793 + Psest_0610 0.16 -2.4 659,793 + Psest_0610 0.16 -2.0 659,794 - Psest_0610 0.16 +0.4 659,794 - Psest_0610 0.16 +0.4 659,794 - Psest_0610 0.16 -1.2 659,794 - Psest_0610 0.16 +2.0 659,794 - Psest_0610 0.16 -0.6 659,794 - Psest_0610 0.16 +0.3 659,813 + Psest_0610 0.18 -1.9 659,813 + Psest_0610 0.18 -1.6 659,813 + Psest_0610 0.18 -3.9 659,813 + Psest_0610 0.18 +2.1 659,813 + Psest_0610 0.18 +0.8 659,813 + Psest_0610 0.18 -1.7 659,814 - Psest_0610 0.18 +0.5 659,814 - Psest_0610 0.18 -0.5 659,814 - Psest_0610 0.18 -0.9 659,814 - Psest_0610 0.18 -0.2 659,814 - Psest_0610 0.18 +0.2 659,814 - Psest_0610 0.18 -0.4 659,814 - Psest_0610 0.18 -0.9 659,814 - Psest_0610 0.18 +0.6 659,814 - Psest_0610 0.18 -0.5 659,814 - Psest_0610 0.18 -2.2 659,825 + Psest_0610 0.19 +0.8 659,835 - Psest_0610 0.19 +0.1 659,835 - Psest_0610 0.19 +0.1 659,888 + Psest_0610 0.23 +0.7 659,888 + Psest_0610 0.23 -1.5 659,888 + Psest_0610 0.23 -0.5 659,889 - Psest_0610 0.23 +1.2 659,889 - Psest_0610 0.23 -1.2 659,889 - Psest_0610 0.23 +0.4 659,965 + Psest_0610 0.29 -3.5 659,965 + Psest_0610 0.29 +0.8 659,965 + Psest_0610 0.29 -1.9 659,965 + Psest_0610 0.29 -2.0 659,966 - Psest_0610 0.29 +1.1 659,966 - Psest_0610 0.29 -0.6 659,966 - Psest_0610 0.29 +0.3 659,973 + Psest_0610 0.29 -1.2 659,973 + Psest_0610 0.29 +0.4 659,973 + Psest_0610 0.29 +0.0 659,973 + Psest_0610 0.29 -0.4 659,973 + Psest_0610 0.29 -0.9 659,974 - Psest_0610 0.30 -0.0 659,994 + Psest_0610 0.31 -0.5 660,000 + Psest_0610 0.31 -0.4 660,001 - Psest_0610 0.32 -3.0 660,001 - Psest_0610 0.32 +0.4 660,165 + Psest_0610 0.43 -1.0 660,258 + Psest_0610 0.50 +0.9 660,258 + Psest_0610 0.50 +1.0 660,258 + Psest_0610 0.50 -0.8 660,258 + Psest_0610 0.50 -1.2 660,258 + Psest_0610 0.50 +0.4 660,258 + Psest_0610 0.50 -0.5 660,258 + Psest_0610 0.50 -0.9 660,258 + Psest_0610 0.50 -2.8 660,259 - Psest_0610 0.50 -0.9 660,324 + Psest_0610 0.55 +0.8 660,324 + Psest_0610 0.55 +0.1 660,325 - Psest_0610 0.55 +0.7 660,325 - Psest_0610 0.55 +0.5 660,325 - Psest_0610 0.55 +0.7 660,325 - Psest_0610 0.55 -1.2 660,325 - Psest_0610 0.55 +0.3 660,325 - Psest_0610 0.55 +0.7 660,325 - Psest_0610 0.55 +1.1 660,325 - Psest_0610 0.55 +1.7 660,335 + Psest_0610 0.56 +0.1 660,335 + Psest_0610 0.56 -2.4 660,335 + Psest_0610 0.56 -0.9 660,335 + Psest_0610 0.56 -0.6 660,335 + Psest_0610 0.56 -0.7 660,335 + Psest_0610 0.56 +2.3 660,335 + Psest_0610 0.56 -0.2 660,335 + Psest_0610 0.56 +0.2 660,335 + Psest_0610 0.56 -0.8 660,336 - Psest_0610 0.56 -1.1 660,336 - Psest_0610 0.56 +0.0 660,336 - Psest_0610 0.56 -0.8 660,336 - Psest_0610 0.56 -1.2 660,336 - Psest_0610 0.56 -2.0 660,336 - Psest_0610 0.56 +1.7 660,336 - Psest_0610 0.56 -1.0 660,336 - Psest_0610 0.56 +1.2 660,339 + Psest_0610 0.56 +1.2 660,339 + Psest_0610 0.56 +0.6 660,339 + Psest_0610 0.56 -1.4 660,339 + Psest_0610 0.56 -1.4 660,339 + Psest_0610 0.56 -2.2 660,339 + Psest_0610 0.56 +0.9 660,339 + Psest_0610 0.56 -0.0 660,339 + Psest_0610 0.56 +0.9 660,340 - Psest_0610 0.56 +0.3 660,340 - Psest_0610 0.56 +1.0 660,345 - Psest_0610 0.57 -1.2 660,396 + Psest_0610 0.60 -0.3 660,504 + Psest_0610 0.68 -2.2 660,505 - Psest_0610 0.68 +0.3 660,505 - Psest_0610 0.68 +0.2 660,505 - Psest_0610 0.68 -0.2 660,592 + Psest_0610 0.75 +0.6 660,592 + Psest_0610 0.75 -0.7 660,592 + Psest_0610 0.75 -1.9
Or see this region's nucleotide sequence