Experiment: Lactate-nitrate; anaerobic sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0532 and Psest_0533 are separated by 97 nucleotides Psest_0533 and Psest_0534 are separated by 117 nucleotides Psest_0534 and Psest_0535 are separated by 8 nucleotides
Psest_0532: Psest_0532 - tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB, at 585,288 to 586,601
_0532
Psest_0533: Psest_0533 - Sel1 repeat., at 586,699 to 587,235
_0533
Psest_0534: Psest_0534 - hypothetical protein, at 587,353 to 587,976
_0534
Psest_0535: Psest_0535 - glutamate-1-semialdehyde-2,1-aminomutase, at 587,985 to 589,268
_0535
Position (kb) 586
587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 585.760 kb on + strand, within Psest_0532 at 585.760 kb on + strand, within Psest_0532 at 585.760 kb on + strand, within Psest_0532 at 585.760 kb on + strand, within Psest_0532 at 585.760 kb on + strand, within Psest_0532 at 585.761 kb on - strand, within Psest_0532 at 585.761 kb on - strand, within Psest_0532 at 585.761 kb on - strand, within Psest_0532 at 585.819 kb on + strand, within Psest_0532 at 585.820 kb on - strand, within Psest_0532 at 585.835 kb on + strand, within Psest_0532 at 585.835 kb on + strand, within Psest_0532 at 585.835 kb on + strand, within Psest_0532 at 585.835 kb on + strand, within Psest_0532 at 585.835 kb on + strand, within Psest_0532 at 585.836 kb on - strand, within Psest_0532 at 585.836 kb on - strand, within Psest_0532 at 586.100 kb on - strand, within Psest_0532 at 586.100 kb on - strand, within Psest_0532 at 586.123 kb on + strand, within Psest_0532 at 586.123 kb on + strand, within Psest_0532 at 586.124 kb on - strand, within Psest_0532 at 586.124 kb on - strand, within Psest_0532 at 586.124 kb on - strand, within Psest_0532 at 586.124 kb on - strand, within Psest_0532 at 586.460 kb on + strand, within Psest_0532 at 586.461 kb on - strand, within Psest_0532 at 586.641 kb on + strand at 586.641 kb on + strand at 586.641 kb on + strand at 586.641 kb on + strand at 586.641 kb on + strand at 586.642 kb on - strand at 586.642 kb on - strand at 586.642 kb on - strand at 586.642 kb on - strand at 586.875 kb on - strand, within Psest_0533 at 586.875 kb on - strand, within Psest_0533 at 586.875 kb on - strand, within Psest_0533 at 586.875 kb on - strand, within Psest_0533 at 586.875 kb on - strand, within Psest_0533 at 586.875 kb on - strand, within Psest_0533 at 586.875 kb on - strand, within Psest_0533 at 586.875 kb on - strand, within Psest_0533 at 586.875 kb on - strand, within Psest_0533 at 586.875 kb on - strand, within Psest_0533 at 586.875 kb on - strand, within Psest_0533 at 586.875 kb on - strand, within Psest_0533 at 586.979 kb on + strand, within Psest_0533 at 586.979 kb on + strand, within Psest_0533 at 586.979 kb on + strand, within Psest_0533 at 586.979 kb on + strand, within Psest_0533 at 586.979 kb on + strand, within Psest_0533 at 586.979 kb on + strand, within Psest_0533 at 586.979 kb on + strand, within Psest_0533 at 586.980 kb on - strand, within Psest_0533 at 587.021 kb on + strand, within Psest_0533 at 587.043 kb on - strand, within Psest_0533 at 587.299 kb on + strand at 587.300 kb on - strand at 587.321 kb on + strand at 587.321 kb on + strand at 587.321 kb on + strand at 587.321 kb on + strand at 587.321 kb on + strand at 587.321 kb on + strand at 587.322 kb on - strand at 587.322 kb on - strand at 587.354 kb on + strand at 587.355 kb on - strand at 587.573 kb on + strand, within Psest_0534 at 587.573 kb on + strand, within Psest_0534 at 587.573 kb on + strand, within Psest_0534 at 587.573 kb on + strand, within Psest_0534 at 587.573 kb on + strand, within Psest_0534 at 587.574 kb on - strand, within Psest_0534 at 587.616 kb on - strand, within Psest_0534
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic sample2 remove 585,760 + Psest_0532 0.36 +0.6 585,760 + Psest_0532 0.36 +0.5 585,760 + Psest_0532 0.36 -2.5 585,760 + Psest_0532 0.36 -1.1 585,760 + Psest_0532 0.36 +0.0 585,761 - Psest_0532 0.36 +0.5 585,761 - Psest_0532 0.36 -0.8 585,761 - Psest_0532 0.36 +1.1 585,819 + Psest_0532 0.40 -2.5 585,820 - Psest_0532 0.40 +1.2 585,835 + Psest_0532 0.42 -0.3 585,835 + Psest_0532 0.42 +1.5 585,835 + Psest_0532 0.42 +0.1 585,835 + Psest_0532 0.42 -0.1 585,835 + Psest_0532 0.42 +0.4 585,836 - Psest_0532 0.42 +0.6 585,836 - Psest_0532 0.42 +1.2 586,100 - Psest_0532 0.62 +0.6 586,100 - Psest_0532 0.62 -0.5 586,123 + Psest_0532 0.64 -1.0 586,123 + Psest_0532 0.64 -0.1 586,124 - Psest_0532 0.64 -0.5 586,124 - Psest_0532 0.64 +1.3 586,124 - Psest_0532 0.64 -0.1 586,124 - Psest_0532 0.64 +1.1 586,460 + Psest_0532 0.89 +1.3 586,461 - Psest_0532 0.89 +1.8 586,641 + -0.8 586,641 + +0.1 586,641 + +0.5 586,641 + +0.1 586,641 + +0.8 586,642 - -0.7 586,642 - -0.4 586,642 - -0.3 586,642 - +0.2 586,875 - Psest_0533 0.33 +2.1 586,875 - Psest_0533 0.33 -1.5 586,875 - Psest_0533 0.33 -0.5 586,875 - Psest_0533 0.33 -1.5 586,875 - Psest_0533 0.33 +0.9 586,875 - Psest_0533 0.33 +0.9 586,875 - Psest_0533 0.33 -0.1 586,875 - Psest_0533 0.33 +0.1 586,875 - Psest_0533 0.33 -2.3 586,875 - Psest_0533 0.33 -2.0 586,875 - Psest_0533 0.33 -1.2 586,875 - Psest_0533 0.33 -0.4 586,979 + Psest_0533 0.52 +0.2 586,979 + Psest_0533 0.52 +0.5 586,979 + Psest_0533 0.52 -0.5 586,979 + Psest_0533 0.52 -1.8 586,979 + Psest_0533 0.52 -0.4 586,979 + Psest_0533 0.52 -2.4 586,979 + Psest_0533 0.52 -1.1 586,980 - Psest_0533 0.52 -0.7 587,021 + Psest_0533 0.60 -0.0 587,043 - Psest_0533 0.64 +0.0 587,299 + +2.8 587,300 - -3.2 587,321 + +1.5 587,321 + +3.6 587,321 + +1.5 587,321 + -0.7 587,321 + -1.5 587,321 + +0.5 587,322 - -0.4 587,322 - +1.1 587,354 + +0.8 587,355 - +1.2 587,573 + Psest_0534 0.35 +0.4 587,573 + Psest_0534 0.35 +0.3 587,573 + Psest_0534 0.35 -2.1 587,573 + Psest_0534 0.35 -0.5 587,573 + Psest_0534 0.35 +0.1 587,574 - Psest_0534 0.35 +0.6 587,616 - Psest_0534 0.42 +0.2
Or see this region's nucleotide sequence