Experiment: Lactate-nitrate; anaerobic sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0525 and Psest_0526 are separated by 263 nucleotides Psest_0526 and Psest_0527 are separated by 66 nucleotides Psest_0527 and Psest_0528 are separated by 100 nucleotides
Psest_0525: Psest_0525 - leucyl-tRNA synthetase, eubacterial and mitochondrial family, at 576,943 to 579,549
_0525
Psest_0526: Psest_0526 - hypothetical protein, at 579,813 to 580,262
_0526
Psest_0527: Psest_0527 - Uncharacterized conserved protein, at 580,329 to 581,102
_0527
Psest_0528: Psest_0528 - apolipoprotein N-acyltransferase, at 581,203 to 582,717
_0528
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 579.681 kb on - strand at 579.681 kb on - strand at 579.681 kb on - strand at 579.681 kb on - strand at 579.681 kb on - strand at 579.681 kb on - strand at 579.681 kb on - strand at 579.681 kb on - strand at 579.681 kb on - strand at 579.681 kb on - strand at 579.681 kb on - strand at 579.681 kb on - strand at 579.772 kb on + strand at 579.773 kb on - strand at 579.773 kb on - strand at 579.849 kb on + strand at 579.849 kb on + strand at 579.849 kb on + strand at 579.849 kb on + strand at 579.978 kb on + strand, within Psest_0526 at 579.979 kb on - strand, within Psest_0526 at 580.244 kb on + strand at 580.244 kb on + strand at 580.245 kb on - strand at 580.245 kb on - strand at 580.245 kb on - strand at 580.341 kb on + strand at 580.342 kb on - strand at 580.492 kb on + strand, within Psest_0527 at 580.493 kb on - strand, within Psest_0527 at 580.493 kb on - strand, within Psest_0527 at 580.493 kb on - strand, within Psest_0527 at 580.638 kb on + strand, within Psest_0527 at 580.638 kb on + strand, within Psest_0527 at 580.639 kb on - strand, within Psest_0527 at 580.723 kb on - strand, within Psest_0527 at 580.762 kb on + strand, within Psest_0527 at 580.762 kb on + strand, within Psest_0527 at 580.762 kb on + strand, within Psest_0527 at 580.762 kb on + strand, within Psest_0527 at 580.763 kb on - strand, within Psest_0527 at 580.763 kb on - strand, within Psest_0527 at 580.763 kb on - strand, within Psest_0527 at 580.763 kb on - strand, within Psest_0527 at 580.836 kb on + strand, within Psest_0527 at 580.836 kb on + strand, within Psest_0527 at 580.836 kb on + strand, within Psest_0527 at 580.836 kb on + strand, within Psest_0527 at 580.836 kb on + strand, within Psest_0527 at 580.836 kb on + strand, within Psest_0527 at 580.836 kb on + strand, within Psest_0527 at 580.836 kb on + strand, within Psest_0527 at 580.836 kb on + strand, within Psest_0527 at 580.837 kb on - strand, within Psest_0527 at 580.837 kb on - strand, within Psest_0527 at 580.837 kb on - strand, within Psest_0527 at 580.837 kb on - strand, within Psest_0527 at 580.837 kb on - strand, within Psest_0527 at 580.837 kb on - strand, within Psest_0527 at 580.902 kb on - strand, within Psest_0527 at 580.902 kb on - strand, within Psest_0527 at 581.082 kb on + strand at 581.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic sample2 remove 579,681 - -1.2 579,681 - -0.8 579,681 - -0.4 579,681 - -1.1 579,681 - -0.2 579,681 - -2.3 579,681 - -0.1 579,681 - +0.5 579,681 - -0.5 579,681 - -0.7 579,681 - -0.1 579,681 - +0.3 579,772 + +0.7 579,773 - +0.9 579,773 - -1.3 579,849 + +0.3 579,849 + +1.1 579,849 + +0.0 579,849 + -0.4 579,978 + Psest_0526 0.37 +0.5 579,979 - Psest_0526 0.37 +1.4 580,244 + +0.8 580,244 + +0.4 580,245 - -0.2 580,245 - +0.2 580,245 - -1.5 580,341 + -0.1 580,342 - +0.1 580,492 + Psest_0527 0.21 +0.5 580,493 - Psest_0527 0.21 +0.0 580,493 - Psest_0527 0.21 -3.4 580,493 - Psest_0527 0.21 +1.6 580,638 + Psest_0527 0.40 -0.2 580,638 + Psest_0527 0.40 -0.5 580,639 - Psest_0527 0.40 -1.1 580,723 - Psest_0527 0.51 +0.5 580,762 + Psest_0527 0.56 +0.5 580,762 + Psest_0527 0.56 -0.6 580,762 + Psest_0527 0.56 -0.4 580,762 + Psest_0527 0.56 +0.5 580,763 - Psest_0527 0.56 -0.7 580,763 - Psest_0527 0.56 -0.1 580,763 - Psest_0527 0.56 -0.1 580,763 - Psest_0527 0.56 +0.5 580,836 + Psest_0527 0.66 +1.3 580,836 + Psest_0527 0.66 +0.7 580,836 + Psest_0527 0.66 +1.2 580,836 + Psest_0527 0.66 +0.4 580,836 + Psest_0527 0.66 +0.5 580,836 + Psest_0527 0.66 -0.2 580,836 + Psest_0527 0.66 -0.4 580,836 + Psest_0527 0.66 -0.2 580,836 + Psest_0527 0.66 +1.0 580,837 - Psest_0527 0.66 +1.9 580,837 - Psest_0527 0.66 +2.0 580,837 - Psest_0527 0.66 +2.2 580,837 - Psest_0527 0.66 +0.2 580,837 - Psest_0527 0.66 +0.9 580,837 - Psest_0527 0.66 +6.2 580,902 - Psest_0527 0.74 -0.4 580,902 - Psest_0527 0.74 +1.9 581,082 + -1.5 581,083 - +0.8
Or see this region's nucleotide sequence