Experiment: Lactate-nitrate; anaerobic sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3989 and Psest_3990 are separated by 196 nucleotides Psest_3990 and Psest_3991 overlap by 4 nucleotides Psest_3991 and Psest_3992 are separated by 101 nucleotides Psest_3992 and Psest_3993 overlap by 4 nucleotides
Psest_3989: Psest_3989 - Disulfide bond chaperones of the HSP33 family, at 4,159,080 to 4,159,967
_3989
Psest_3990: Psest_3990 - PAP2 superfamily., at 4,160,164 to 4,160,955
_3990
Psest_3991: Psest_3991 - Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog), at 4,160,952 to 4,161,350
_3991
Psest_3992: Psest_3992 - Uncharacterized protein conserved in archaea, at 4,161,452 to 4,161,919
_3992
Psest_3993: Psest_3993 - alpha-L-glutamate ligases, RimK family, at 4,161,916 to 4,162,821
_3993
Position (kb) 4160
4161
4162 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4160.124 kb on + strand at 4160.125 kb on - strand at 4160.125 kb on - strand at 4160.159 kb on + strand at 4160.160 kb on - strand at 4160.160 kb on - strand at 4160.160 kb on - strand at 4160.222 kb on + strand at 4160.222 kb on + strand at 4160.222 kb on + strand at 4160.222 kb on + strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.223 kb on - strand at 4160.364 kb on + strand, within Psest_3990 at 4160.364 kb on + strand, within Psest_3990 at 4160.364 kb on + strand, within Psest_3990 at 4160.364 kb on + strand, within Psest_3990 at 4160.486 kb on + strand, within Psest_3990 at 4160.486 kb on + strand, within Psest_3990 at 4160.487 kb on - strand, within Psest_3990 at 4160.575 kb on + strand, within Psest_3990 at 4160.726 kb on + strand, within Psest_3990 at 4160.727 kb on - strand, within Psest_3990 at 4160.727 kb on - strand, within Psest_3990 at 4160.729 kb on + strand, within Psest_3990 at 4160.729 kb on + strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.730 kb on - strand, within Psest_3990 at 4160.840 kb on - strand, within Psest_3990 at 4160.918 kb on + strand at 4160.918 kb on + strand at 4160.918 kb on + strand at 4160.953 kb on + strand at 4161.097 kb on + strand, within Psest_3991 at 4161.097 kb on + strand, within Psest_3991 at 4161.097 kb on + strand, within Psest_3991 at 4161.098 kb on - strand, within Psest_3991 at 4161.361 kb on + strand at 4161.361 kb on + strand at 4161.361 kb on + strand at 4161.362 kb on - strand at 4161.362 kb on - strand at 4161.362 kb on - strand at 4161.368 kb on + strand at 4161.368 kb on + strand at 4161.368 kb on + strand at 4161.368 kb on + strand at 4161.369 kb on - strand at 4161.369 kb on - strand at 4161.380 kb on + strand at 4161.381 kb on - strand at 4161.381 kb on - strand at 4161.381 kb on - strand at 4161.388 kb on + strand at 4161.389 kb on - strand at 4161.389 kb on - strand at 4161.389 kb on - strand at 4161.389 kb on - strand at 4161.389 kb on - strand at 4161.389 kb on - strand at 4161.420 kb on + strand at 4161.421 kb on - strand at 4161.421 kb on - strand at 4161.421 kb on - strand at 4161.421 kb on - strand at 4161.556 kb on + strand, within Psest_3992 at 4161.556 kb on + strand, within Psest_3992 at 4161.725 kb on + strand, within Psest_3992 at 4161.726 kb on - strand, within Psest_3992 at 4161.726 kb on - strand, within Psest_3992 at 4161.726 kb on - strand, within Psest_3992 at 4161.726 kb on - strand, within Psest_3992 at 4161.726 kb on - strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.872 kb on + strand, within Psest_3992 at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.873 kb on - strand at 4161.874 kb on + strand at 4161.952 kb on + strand at 4161.952 kb on + strand at 4161.953 kb on - strand at 4161.953 kb on - strand at 4162.027 kb on + strand, within Psest_3993 at 4162.027 kb on + strand, within Psest_3993 at 4162.027 kb on + strand, within Psest_3993 at 4162.027 kb on + strand, within Psest_3993 at 4162.028 kb on - strand, within Psest_3993 at 4162.028 kb on - strand, within Psest_3993 at 4162.028 kb on - strand, within Psest_3993 at 4162.028 kb on - strand, within Psest_3993 at 4162.129 kb on + strand, within Psest_3993 at 4162.129 kb on + strand, within Psest_3993 at 4162.129 kb on + strand, within Psest_3993 at 4162.129 kb on + strand, within Psest_3993 at 4162.129 kb on + strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993 at 4162.130 kb on - strand, within Psest_3993
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrate; anaerobic sample1 remove 4,160,124 + +0.1 4,160,125 - -1.1 4,160,125 - +1.1 4,160,159 + -0.4 4,160,160 - +0.4 4,160,160 - -0.4 4,160,160 - -0.3 4,160,222 + +1.2 4,160,222 + +1.5 4,160,222 + +0.5 4,160,222 + +0.8 4,160,223 - +0.5 4,160,223 - +1.1 4,160,223 - +0.3 4,160,223 - +0.4 4,160,223 - +0.5 4,160,223 - +0.3 4,160,223 - +0.2 4,160,223 - +0.9 4,160,364 + Psest_3990 0.25 -0.1 4,160,364 + Psest_3990 0.25 -0.1 4,160,364 + Psest_3990 0.25 +0.8 4,160,364 + Psest_3990 0.25 +0.1 4,160,486 + Psest_3990 0.41 +0.5 4,160,486 + Psest_3990 0.41 +0.5 4,160,487 - Psest_3990 0.41 -0.1 4,160,575 + Psest_3990 0.52 +0.5 4,160,726 + Psest_3990 0.71 +1.0 4,160,727 - Psest_3990 0.71 +1.1 4,160,727 - Psest_3990 0.71 -1.9 4,160,729 + Psest_3990 0.71 -0.6 4,160,729 + Psest_3990 0.71 +0.5 4,160,730 - Psest_3990 0.71 +1.4 4,160,730 - Psest_3990 0.71 -1.2 4,160,730 - Psest_3990 0.71 +1.0 4,160,730 - Psest_3990 0.71 -0.4 4,160,730 - Psest_3990 0.71 -0.8 4,160,730 - Psest_3990 0.71 -0.2 4,160,730 - Psest_3990 0.71 +0.9 4,160,840 - Psest_3990 0.85 -0.6 4,160,918 + +0.4 4,160,918 + +0.2 4,160,918 + +0.6 4,160,953 + -0.2 4,161,097 + Psest_3991 0.36 +0.4 4,161,097 + Psest_3991 0.36 +0.2 4,161,097 + Psest_3991 0.36 +2.8 4,161,098 - Psest_3991 0.37 +0.9 4,161,361 + -0.8 4,161,361 + -0.9 4,161,361 + -1.9 4,161,362 - +0.6 4,161,362 - -1.2 4,161,362 - +0.7 4,161,368 + -0.4 4,161,368 + -0.6 4,161,368 + +0.7 4,161,368 + +0.5 4,161,369 - +0.1 4,161,369 - -0.3 4,161,380 + +0.3 4,161,381 - +0.5 4,161,381 - -1.4 4,161,381 - -0.3 4,161,388 + -0.1 4,161,389 - -0.4 4,161,389 - -0.6 4,161,389 - +1.1 4,161,389 - +0.1 4,161,389 - +0.6 4,161,389 - +1.2 4,161,420 + +0.9 4,161,421 - +0.0 4,161,421 - +0.2 4,161,421 - -0.2 4,161,421 - -0.8 4,161,556 + Psest_3992 0.22 -0.2 4,161,556 + Psest_3992 0.22 +0.9 4,161,725 + Psest_3992 0.58 -0.1 4,161,726 - Psest_3992 0.59 +1.2 4,161,726 - Psest_3992 0.59 +1.0 4,161,726 - Psest_3992 0.59 +1.4 4,161,726 - Psest_3992 0.59 -0.2 4,161,726 - Psest_3992 0.59 +0.7 4,161,872 + Psest_3992 0.90 -0.3 4,161,872 + Psest_3992 0.90 -1.3 4,161,872 + Psest_3992 0.90 -0.6 4,161,872 + Psest_3992 0.90 -1.0 4,161,872 + Psest_3992 0.90 -0.6 4,161,872 + Psest_3992 0.90 +0.6 4,161,872 + Psest_3992 0.90 -0.3 4,161,872 + Psest_3992 0.90 +0.2 4,161,872 + Psest_3992 0.90 -1.2 4,161,872 + Psest_3992 0.90 +1.8 4,161,872 + Psest_3992 0.90 +0.2 4,161,872 + Psest_3992 0.90 +0.7 4,161,872 + Psest_3992 0.90 +0.4 4,161,872 + Psest_3992 0.90 -0.9 4,161,872 + Psest_3992 0.90 +0.1 4,161,872 + Psest_3992 0.90 +0.7 4,161,873 - -0.4 4,161,873 - +1.7 4,161,873 - -0.8 4,161,873 - -0.7 4,161,873 - +0.6 4,161,873 - -0.2 4,161,873 - -0.3 4,161,873 - -0.8 4,161,873 - +0.4 4,161,873 - +0.5 4,161,873 - +0.3 4,161,873 - -1.2 4,161,873 - +0.6 4,161,873 - +0.2 4,161,873 - -0.9 4,161,873 - -0.2 4,161,873 - +0.5 4,161,873 - +0.1 4,161,873 - +0.3 4,161,873 - -0.3 4,161,873 - -0.6 4,161,873 - +0.0 4,161,873 - +0.6 4,161,873 - -0.1 4,161,873 - -1.0 4,161,873 - +0.8 4,161,873 - -1.0 4,161,873 - +0.3 4,161,873 - -1.9 4,161,873 - +0.4 4,161,873 - +1.0 4,161,873 - +0.8 4,161,873 - -0.2 4,161,873 - -1.4 4,161,874 + -1.3 4,161,952 + -0.3 4,161,952 + +0.7 4,161,953 - -0.0 4,161,953 - -0.4 4,162,027 + Psest_3993 0.12 -0.4 4,162,027 + Psest_3993 0.12 -0.5 4,162,027 + Psest_3993 0.12 -0.1 4,162,027 + Psest_3993 0.12 +3.3 4,162,028 - Psest_3993 0.12 +1.1 4,162,028 - Psest_3993 0.12 -0.1 4,162,028 - Psest_3993 0.12 -0.1 4,162,028 - Psest_3993 0.12 -0.6 4,162,129 + Psest_3993 0.24 +0.4 4,162,129 + Psest_3993 0.24 -1.3 4,162,129 + Psest_3993 0.24 +0.4 4,162,129 + Psest_3993 0.24 +1.3 4,162,129 + Psest_3993 0.24 -0.5 4,162,130 - Psest_3993 0.24 +1.1 4,162,130 - Psest_3993 0.24 +0.3 4,162,130 - Psest_3993 0.24 +1.1 4,162,130 - Psest_3993 0.24 -1.2 4,162,130 - Psest_3993 0.24 +0.0 4,162,130 - Psest_3993 0.24 -0.3
Or see this region's nucleotide sequence