Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4269

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C)
5,623,954	-		BT4268	0.56	-0.4
5,623,956	-		BT4268	0.56	-0.7
5,623,976	-		BT4268	0.57	-1.8
5,623,981	+		BT4268	0.57	+2.1
5,623,982	-		BT4268	0.57	-2.9
5,623,995	+		BT4268	0.58	-1.8
5,623,996	-		BT4268	0.58	+0.0
5,624,032	+		BT4268	0.60	-0.9
5,624,062	+		BT4268	0.61	+0.5
5,624,063	-		BT4268	0.61	+0.4
5,624,063	-		BT4268	0.61	+0.2
5,624,122	-		BT4268	0.64	+4.2
5,624,150	-		BT4268	0.66	+0.8
5,624,233	-		BT4268	0.70	-1.3
5,624,243	-		BT4268	0.70	-0.1
5,624,257	+		BT4268	0.71	-0.4
5,624,260	-		BT4268	0.71	+0.6
5,624,338	-		BT4268	0.75	+0.8
5,624,372	+		BT4268	0.76	+0.8
5,624,373	-		BT4268	0.76	-2.2
5,624,381	+		BT4268	0.77	+2.0
5,624,409	-		BT4268	0.78	+1.1
5,624,656	-				+1.5
5,624,788	-				-0.7
5,624,885	-				-0.2
5,624,895	+				-1.7
5,624,895	+				-0.9
5,624,945	-				+0.5
5,625,012	-		BT4269	0.13	-1.5
5,625,170	-		BT4269	0.29	-1.1
5,625,170	-		BT4269	0.29	-0.4
5,625,207	-		BT4269	0.32	-0.1
5,625,321	-		BT4269	0.44	-2.5
5,625,323	-		BT4269	0.44	-2.0
5,625,389	-		BT4269	0.51	-0.2
5,625,398	+		BT4269	0.52	-1.0
5,625,443	-		BT4269	0.56	-0.8
5,625,451	+		BT4269	0.57	-0.1
5,625,452	-		BT4269	0.57	-0.7
5,625,570	-		BT4269	0.69	-0.8
5,625,570	-		BT4269	0.69	-1.5
5,625,570	-		BT4269	0.69	-0.1
5,625,659	-		BT4269	0.78	-0.5
5,625,661	+		BT4269	0.78	-0.5
5,625,662	-		BT4269	0.78	-2.0
5,625,671	+		BT4269	0.79	-0.4
5,625,674	-		BT4269	0.79	-1.6
5,625,721	+		BT4269	0.84	+1.1
5,625,721	+		BT4269	0.84	-1.1
5,625,726	-		BT4269	0.84	-0.2
5,625,768	-		BT4269	0.89	-1.1
5,625,772	+		BT4269	0.89	-0.8
5,625,798	-				-1.1
5,625,812	-				-0.8
5,625,832	-				-1.6
5,625,849	-				-0.6
5,625,894	-				+0.2
5,626,091	+		BT4270	0.11	-0.2
5,626,092	-		BT4270	0.11	-1.3
5,626,180	-		BT4270	0.16	+0.8
5,626,344	-		BT4270	0.25	-0.8
5,626,364	+		BT4270	0.26	-0.5
5,626,368	-		BT4270	0.26	+0.0
5,626,379	+		BT4270	0.27	-0.4
5,626,520	+		BT4270	0.34	-1.1
5,626,521	-		BT4270	0.34	+0.5
5,626,594	-		BT4270	0.39	+0.2
5,626,595	+		BT4270	0.39	-1.2
5,626,596	-		BT4270	0.39	-1.2
5,626,626	+		BT4270	0.40	-2.8
5,626,667	+		BT4270	0.43	-1.5
5,626,694	+		BT4270	0.44	-1.2
5,626,694	+		BT4270	0.44	-1.7
5,626,694	+		BT4270	0.44	+0.1
5,626,695	-		BT4270	0.44	+0.2
5,626,695	-		BT4270	0.44	+0.8
5,626,793	+		BT4270	0.49	-0.5
5,626,793	+		BT4270	0.49	-1.8
5,626,794	-		BT4270	0.50	-1.5
5,626,853	+		BT4270	0.53	-0.9