Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3219

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C)
4,108,563	-		BT3217	0.32	-1.3
4,108,571	+		BT3217	0.36	-0.7
4,108,571	+		BT3217	0.36	-0.1
4,108,572	-		BT3217	0.36	-0.1
4,108,583	-		BT3217	0.42	-2.2
4,108,613	+		BT3217	0.58	-0.9
4,108,614	-		BT3217	0.58	-2.1
4,108,624	-		BT3217	0.64	-0.9
4,108,643	+		BT3217	0.73	-3.1
4,108,648	-		BT3217	0.76	+0.4
4,108,687	+				-0.7
4,108,694	-				-0.2
4,108,708	-				-2.7
4,108,729	+		BT3218	0.17	-1.9
4,108,756	-		BT3218	0.28	-1.6
4,108,756	-		BT3218	0.28	-2.9
4,108,756	-		BT3218	0.28	-0.7
4,108,787	+		BT3218	0.41	-1.0
4,108,788	-		BT3218	0.42	+1.1
4,108,868	+		BT3218	0.76	-2.7
4,108,877	-		BT3218	0.80	-2.1
4,108,877	-		BT3218	0.80	-0.5
4,108,908	+				-0.8
4,108,909	-				-1.8
4,108,911	-				-0.2
4,108,911	-				-0.0
4,108,917	+				+0.1
4,108,939	-				-1.8
4,108,958	+				-1.2
4,109,110	+				-1.6
4,109,110	+				+0.5
4,110,444	+				-0.1
4,110,445	-				+0.0
4,110,467	+				-2.6
4,110,537	+				-1.6
4,110,545	-				-1.1
4,110,551	+				+0.4
4,110,577	+				-0.7
4,110,577	+				-1.0
4,110,584	+				+1.9
4,110,585	-				-0.5
4,110,593	+				-0.1
4,110,605	-				-0.9
4,110,629	-				-0.2
4,110,680	-				-2.3
4,110,682	-				-2.1
4,110,687	-				-0.6
4,110,687	-				-1.6
4,110,731	-				-1.6
4,110,739	+				-1.9
4,110,739	+				-1.5
4,110,752	+				+1.4
4,110,775	-				+0.5
4,110,805	+				-0.9
4,110,810	+				+0.4
4,110,810	+				+0.1
4,110,811	-				-0.7
4,110,815	+				-0.4
4,110,816	-				-0.1
4,110,819	-				-1.9
4,110,819	-				-0.3
4,110,903	+				+0.4
4,110,967	+				-1.1
4,110,968	-				-2.1
4,111,017	+				-1.6
4,111,146	+				+0.6
4,111,147	-				-0.9
4,111,165	-				+0.2
4,111,207	-				+0.3
4,111,208	+				-0.6
4,111,208	+				+0.1
4,111,209	-				+0.4
4,111,227	+				-1.1
4,111,258	-				-0.8
4,111,263	-				-0.3
4,111,335	+				+0.7