Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3215

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C)
4,107,684	+		BT3215	0.11	-1.2
4,107,684	+				-0.6
4,107,712	+		BT3215	0.20	-0.6
4,107,734	+		BT3215	0.26	-0.2
4,107,907	+		BT3215	0.78	+0.0
4,107,932	+		BT3215	0.85	+1.9
4,107,932	+		BT3215	0.85	-0.1
4,107,974	+				-1.2
4,107,974	+				+1.0
4,108,563	-		BT3217	0.32	-1.3
4,108,571	+		BT3217	0.36	-0.7
4,108,571	+		BT3217	0.36	-0.1
4,108,572	-		BT3217	0.36	-0.1
4,108,583	-		BT3217	0.42	-2.2
4,108,613	+		BT3217	0.58	-0.9
4,108,614	-		BT3217	0.58	-2.1
4,108,624	-		BT3217	0.64	-0.9
4,108,643	+		BT3217	0.73	-3.1
4,108,648	-		BT3217	0.76	+0.4
4,108,687	+				-0.7
4,108,694	-				-0.2
4,108,708	-				-2.7
4,108,729	+		BT3218	0.17	-1.9
4,108,756	-		BT3218	0.28	-1.6
4,108,756	-		BT3218	0.28	-2.9
4,108,756	-		BT3218	0.28	-0.7
4,108,787	+		BT3218	0.41	-1.0
4,108,788	-		BT3218	0.42	+1.1
4,108,868	+		BT3218	0.76	-2.7
4,108,877	-		BT3218	0.80	-2.1
4,108,877	-		BT3218	0.80	-0.5
4,108,908	+				-0.8
4,108,909	-				-1.8
4,108,911	-				-0.2
4,108,911	-				-0.0
4,108,917	+				+0.1
4,108,939	-				-1.8
4,108,958	+				-1.2