Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1667

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C)
2,058,825	+				-0.7
2,058,847	+				-0.4
2,058,890	+				-1.4
2,058,891	-				-1.3
2,059,029	+		BT1666	0.18	-1.4
2,059,030	-		BT1666	0.18	-0.7
2,059,080	-		BT1666	0.25	+0.1
2,059,114	-		BT1666	0.29	-1.5
2,059,144	+		BT1666	0.33	+0.3
2,059,144	+		BT1666	0.33	+0.2
2,059,339	+		BT1666	0.58	-1.5
2,059,340	-		BT1666	0.58	+1.3
2,059,420	+		BT1666	0.68	+0.2
2,059,494	-		BT1666	0.78	-1.6
2,059,555	-		BT1666	0.86	-0.2
2,059,563	+		BT1666	0.87	-0.7
2,059,571	-		BT1666	0.88	+0.2
2,059,579	-		BT1666	0.89	-1.3
2,059,588	+				+0.5
2,059,588	+				-2.5
2,059,589	-				-0.5
2,059,651	+				+1.5
2,059,654	+				-0.1
2,059,665	+				-2.7
2,059,665	+				+0.5
2,059,665	+				-0.6
2,059,665	+				-0.1
2,059,665	-				+0.5
2,059,667	-				-2.3
2,059,757	-				+1.3
2,059,758	+				+0.4
2,059,758	+				-1.5
2,059,816	-		BT1667	0.19	-1.1
2,059,872	-		BT1667	0.45	-4.0
2,059,980	-				-0.6
2,060,021	+				+0.7
2,060,028	+				-0.5
2,060,029	-				-0.8
2,060,098	+				-0.8
2,060,098	+				-0.5
2,060,242	+		BT1668	0.18	+0.7
2,060,243	-		BT1668	0.18	+1.2
2,060,270	-		BT1668	0.21	+0.2
2,060,274	-		BT1668	0.21	-0.5
2,060,276	-		BT1668	0.21	+0.8
2,060,348	+		BT1668	0.28	-1.1
2,060,353	-		BT1668	0.29	-2.8
2,060,437	-		BT1668	0.37	+0.8
2,060,448	+		BT1668	0.38	-2.1
2,060,449	-		BT1668	0.38	-1.8
2,060,568	+		BT1668	0.49	-1.1
2,060,569	-		BT1668	0.49	+0.7
2,060,569	-		BT1668	0.49	+0.6
2,060,569	-		BT1668	0.49	+0.5
2,060,676	+		BT1668	0.59	-0.4
2,060,747	-		BT1668	0.66	-1.7
2,060,747	-		BT1668	0.66	-0.8
2,060,763	+		BT1668	0.68	+0.1
2,060,766	-		BT1668	0.68	-0.3
2,060,792	-		BT1668	0.70	-1.7
2,060,829	+		BT1668	0.74	-0.7
2,060,830	-		BT1668	0.74	+1.5
2,060,834	-		BT1668	0.74	-2.3
2,060,845	+		BT1668	0.75	-1.1
2,060,846	-		BT1668	0.75	+0.0
2,060,896	-		BT1668	0.80	-0.0
2,060,896	-		BT1668	0.80	-1.9
2,060,956	+		BT1668	0.86	+0.2