Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0636 and BT0637 are separated by 114 nucleotides BT0637 and BT0638 overlap by 1 nucleotides BT0638 and BT0639 are separated by 12 nucleotides
BT0636: BT0636 - putative transcriptional regulator (NCBI ptt file), at 783,550 to 785,196
BT0636
BT0637: BT0637 - conserved hypothetical protein (NCBI ptt file), at 785,311 to 786,540
BT0637
BT0638: BT0638 - putative methionine aminopeptidase A (NCBI ptt file), at 786,540 to 787,463
BT0638
BT0639: BT0639 - conserved hypothetical protein (NCBI ptt file), at 787,476 to 788,102
BT0639
Position (kb) 785
786
787 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 784.350 kb on + strand, within BT0636 at 784.435 kb on + strand, within BT0636 at 784.556 kb on - strand, within BT0636 at 784.596 kb on + strand, within BT0636 at 784.611 kb on + strand, within BT0636 at 784.638 kb on + strand, within BT0636 at 784.690 kb on - strand, within BT0636 at 784.725 kb on + strand, within BT0636 at 784.746 kb on + strand, within BT0636 at 784.792 kb on - strand, within BT0636 at 784.795 kb on - strand, within BT0636 at 784.860 kb on + strand, within BT0636 at 784.861 kb on - strand, within BT0636 at 785.004 kb on - strand, within BT0636 at 785.116 kb on - strand at 785.125 kb on + strand at 785.126 kb on - strand at 785.175 kb on + strand at 785.190 kb on + strand at 785.195 kb on - strand at 785.199 kb on - strand at 785.223 kb on - strand at 785.253 kb on + strand at 785.378 kb on - strand at 785.588 kb on - strand, within BT0637 at 785.679 kb on - strand, within BT0637 at 785.679 kb on - strand, within BT0637 at 785.735 kb on - strand, within BT0637 at 785.752 kb on - strand, within BT0637 at 785.837 kb on + strand, within BT0637 at 785.851 kb on + strand, within BT0637 at 785.887 kb on + strand, within BT0637 at 786.323 kb on - strand, within BT0637 at 786.466 kb on - strand at 786.523 kb on - strand at 786.523 kb on - strand at 786.526 kb on + strand at 786.544 kb on + strand at 786.545 kb on - strand at 786.661 kb on + strand, within BT0638 at 786.778 kb on - strand, within BT0638 at 786.957 kb on - strand, within BT0638 at 786.963 kb on - strand, within BT0638 at 787.008 kb on + strand, within BT0638 at 787.008 kb on + strand, within BT0638 at 787.112 kb on - strand, within BT0638 at 787.211 kb on + strand, within BT0638 at 787.214 kb on - strand, within BT0638 at 787.400 kb on + strand at 787.437 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C) remove 784,350 + BT0636 0.49 -1.4 784,435 + BT0636 0.54 -0.7 784,556 - BT0636 0.61 -2.7 784,596 + BT0636 0.64 -3.8 784,611 + BT0636 0.64 -1.7 784,638 + BT0636 0.66 +1.6 784,690 - BT0636 0.69 -1.1 784,725 + BT0636 0.71 +1.4 784,746 + BT0636 0.73 +0.8 784,792 - BT0636 0.75 +0.3 784,795 - BT0636 0.76 +0.5 784,860 + BT0636 0.80 -1.6 784,861 - BT0636 0.80 -2.1 785,004 - BT0636 0.88 -0.8 785,116 - -1.2 785,125 + +1.0 785,126 - -0.7 785,175 + +1.4 785,190 + -2.0 785,195 - -1.7 785,199 - -0.3 785,223 - -0.3 785,253 + +2.6 785,378 - -0.6 785,588 - BT0637 0.23 -1.3 785,679 - BT0637 0.30 -1.0 785,679 - BT0637 0.30 -0.4 785,735 - BT0637 0.34 -1.2 785,752 - BT0637 0.36 +0.0 785,837 + BT0637 0.43 +0.3 785,851 + BT0637 0.44 -0.4 785,887 + BT0637 0.47 +0.0 786,323 - BT0637 0.82 +0.2 786,466 - +0.3 786,523 - +1.6 786,523 - -1.9 786,526 + -1.9 786,544 + -0.7 786,545 - -2.8 786,661 + BT0638 0.13 -0.6 786,778 - BT0638 0.26 -0.7 786,957 - BT0638 0.45 -1.8 786,963 - BT0638 0.46 -1.2 787,008 + BT0638 0.51 -1.2 787,008 + BT0638 0.51 -1.8 787,112 - BT0638 0.62 -2.0 787,211 + BT0638 0.73 -0.9 787,214 - BT0638 0.73 +0.5 787,400 + -3.4 787,437 + -1.4
Or see this region's nucleotide sequence