Experiment: Ferulic (C) and Ammonium chloride (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS04405 and PFLU_RS04410 overlap by 1 nucleotides PFLU_RS04410 and PFLU_RS04415 overlap by 14 nucleotides PFLU_RS04415 and PFLU_RS04420 are separated by 8 nucleotides PFLU_RS04420 and PFLU_RS04425 are separated by 0 nucleotides
PFLU_RS04405: PFLU_RS04405 - LPS export ABC transporter ATP-binding protein, at 993,022 to 993,747
_RS04405
PFLU_RS04410: PFLU_RS04410 - lipopolysaccharide transport periplasmic protein LptA, at 993,747 to 994,280
_RS04410
PFLU_RS04415: PFLU_RS04415 - LPS export ABC transporter periplasmic protein LptC, at 994,267 to 994,839
_RS04415
PFLU_RS04420: PFLU_RS04420 - HAD family hydrolase, at 994,848 to 995,372
_RS04420
PFLU_RS04425: PFLU_RS04425 - KpsF/GutQ family sugar-phosphate isomerase, at 995,373 to 996,347
_RS04425
Position (kb) 994
995 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 994.292 kb on - strand at 994.292 kb on - strand at 994.292 kb on - strand at 994.401 kb on - strand, within PFLU_RS04415 at 994.401 kb on - strand, within PFLU_RS04415 at 994.401 kb on - strand, within PFLU_RS04415 at 994.418 kb on - strand, within PFLU_RS04415 at 994.418 kb on - strand, within PFLU_RS04415 at 994.418 kb on - strand, within PFLU_RS04415 at 994.418 kb on - strand, within PFLU_RS04415 at 994.808 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.840 kb on - strand at 994.850 kb on - strand at 994.850 kb on - strand at 994.850 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 994.852 kb on - strand at 995.066 kb on - strand, within PFLU_RS04420 at 995.070 kb on + strand, within PFLU_RS04420 at 995.287 kb on + strand, within PFLU_RS04420 at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand at 995.375 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic (C) and Ammonium chloride (N); with MOPS remove 994,292 - -0.3 994,292 - -0.6 994,292 - -0.6 994,401 - PFLU_RS04415 0.23 -1.7 994,401 - PFLU_RS04415 0.23 -0.8 994,401 - PFLU_RS04415 0.23 -2.3 994,418 - PFLU_RS04415 0.26 -0.3 994,418 - PFLU_RS04415 0.26 -0.6 994,418 - PFLU_RS04415 0.26 -0.6 994,418 - PFLU_RS04415 0.26 -1.4 994,808 - +0.0 994,840 - -1.9 994,840 - -0.1 994,840 - -1.3 994,840 - +0.5 994,840 - +1.4 994,840 - +0.8 994,840 - +1.0 994,840 - -1.4 994,840 - -0.4 994,840 - -0.7 994,850 - +0.6 994,850 - -1.1 994,850 - +1.0 994,852 - -1.0 994,852 - -1.0 994,852 - +1.8 994,852 - -0.4 994,852 - -1.0 994,852 - -1.8 994,852 - -0.1 994,852 - -0.6 994,852 - +0.6 994,852 - -0.1 994,852 - -0.3 994,852 - -0.7 994,852 - +0.0 994,852 - -0.5 994,852 - -0.8 994,852 - -0.7 994,852 - -0.7 994,852 - +0.1 994,852 - -0.8 994,852 - -1.5 994,852 - +0.4 994,852 - -0.0 994,852 - -1.3 994,852 - +0.7 994,852 - -1.3 994,852 - -1.1 994,852 - -0.9 994,852 - -0.9 994,852 - -0.7 994,852 - +0.1 994,852 - -1.8 994,852 - -0.5 994,852 - -0.5 994,852 - -0.4 994,852 - +0.0 994,852 - -0.3 994,852 - -1.6 994,852 - +0.1 995,066 - PFLU_RS04420 0.42 +3.6 995,070 + PFLU_RS04420 0.42 +0.0 995,287 + PFLU_RS04420 0.84 +1.4 995,375 - +0.3 995,375 - +1.0 995,375 - -0.9 995,375 - +0.5 995,375 - -0.7 995,375 - +0.9 995,375 - -0.1 995,375 - +0.0 995,375 - +1.4 995,375 - +1.4 995,375 - -0.8 995,375 - +1.5 995,375 - -0.1 995,375 - -0.7 995,375 - -1.8 995,375 - +1.0 995,375 - +1.3 995,375 - +0.3 995,375 - +0.5 995,375 - +0.5 995,375 - -0.4 995,375 - +0.9 995,375 - -0.1 995,375 - -0.9
Or see this region's nucleotide sequence