Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05980

Experiment: 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS
1,337,210	+		PFLU_RS05975	0.52	-0.4
1,337,210	+		PFLU_RS05975	0.52	-1.2
1,337,210	+		PFLU_RS05975	0.52	-0.8
1,337,211	-		PFLU_RS05975	0.52	-2.0
1,337,211	-		PFLU_RS05975	0.52	-1.5
1,337,276	+		PFLU_RS05975	0.56	-1.7
1,337,276	+		PFLU_RS05975	0.56	+0.2
1,337,277	-		PFLU_RS05975	0.56	-1.2
1,337,302	+		PFLU_RS05975	0.57	-2.3
1,337,302	+		PFLU_RS05975	0.57	-0.1
1,337,302	+		PFLU_RS05975	0.57	-2.3
1,337,302	+		PFLU_RS05975	0.57	+1.4
1,337,303	-		PFLU_RS05975	0.57	-0.0
1,337,303	-		PFLU_RS05975	0.57	+0.7
1,337,303	-		PFLU_RS05975	0.57	-1.5
1,337,303	-		PFLU_RS05975	0.57	+0.4
1,337,328	-		PFLU_RS05975	0.59	-0.2
1,337,345	+		PFLU_RS05975	0.59	-2.0
1,337,345	+		PFLU_RS05975	0.59	-0.2
1,337,345	+		PFLU_RS05975	0.59	+0.8
1,337,346	-		PFLU_RS05975	0.60	-2.3
1,337,346	-		PFLU_RS05975	0.60	+0.7
1,337,346	-		PFLU_RS05975	0.60	-0.1
1,337,346	-		PFLU_RS05975	0.60	+0.4
1,337,346	-		PFLU_RS05975	0.60	+0.8
1,337,381	+		PFLU_RS05975	0.61	+1.2
1,337,381	+		PFLU_RS05975	0.61	+0.8
1,337,381	+		PFLU_RS05975	0.61	+0.5
1,337,382	-		PFLU_RS05975	0.61	-0.1
1,337,595	-		PFLU_RS05975	0.73	+0.6
1,337,675	+		PFLU_RS05975	0.77	+2.1
1,337,675	+		PFLU_RS05975	0.77	+0.7
1,337,675	+		PFLU_RS05975	0.77	+1.2
1,337,675	+		PFLU_RS05975	0.77	+1.1
1,337,675	+		PFLU_RS05975	0.77	-0.5
1,337,675	+		PFLU_RS05975	0.77	-0.5
1,337,676	-		PFLU_RS05975	0.77	-0.6
1,337,676	-		PFLU_RS05975	0.77	-1.5
1,337,676	-		PFLU_RS05975	0.77	-1.3
1,337,676	-		PFLU_RS05975	0.77	-0.1
1,337,676	-		PFLU_RS05975	0.77	+2.1
1,337,676	-		PFLU_RS05975	0.77	-1.5
1,337,825	+		PFLU_RS05975	0.85	-0.3
1,337,825	+		PFLU_RS05975	0.85	+1.6
1,337,825	+		PFLU_RS05975	0.85	-0.2
1,337,825	+		PFLU_RS05975	0.85	-0.5
1,337,879	+		PFLU_RS05975	0.88	-0.1
1,337,879	+		PFLU_RS05975	0.88	-2.5
1,337,879	+		PFLU_RS05975	0.88	-1.6
1,337,879	+		PFLU_RS05975	0.88	+1.3
1,337,879	+		PFLU_RS05975	0.88	+1.2
1,337,879	+		PFLU_RS05975	0.88	-0.8
1,337,880	-		PFLU_RS05975	0.88	+1.2
1,337,880	-		PFLU_RS05975	0.88	-0.4
1,337,880	-		PFLU_RS05975	0.88	-0.1
1,337,880	-		PFLU_RS05975	0.88	+0.3
1,337,880	-		PFLU_RS05975	0.88	+0.7
1,337,880	-		PFLU_RS05975	0.88	-1.0
1,337,880	-		PFLU_RS05975	0.88	+1.5
1,337,880	-		PFLU_RS05975	0.88	-1.0
1,337,880	-		PFLU_RS05975	0.88	-0.9
1,337,880	-		PFLU_RS05975	0.88	+0.8
1,337,902	-		PFLU_RS05975	0.89	-0.2
1,337,959	+				+2.8
1,337,959	+				+1.5
1,337,959	+				-2.7
1,337,959	+				+1.5
1,337,959	+				-2.5
1,337,959	+				+0.8
1,337,959	+				+1.1
1,337,959	+				+0.9
1,337,959	+				-1.6
1,337,959	+				-1.0
1,337,959	+				-0.5
1,337,959	+				+1.4
1,337,959	+				+0.4
1,337,959	+				+1.0
1,337,959	+				-2.5
1,337,959	+				-0.6
1,337,959	+				+0.1
1,337,959	+				-2.6
1,337,959	+				-2.0
1,337,959	+				+2.7
1,337,960	-				-1.5
1,337,960	-				+0.6
1,337,960	-				+1.0
1,337,960	-				-0.2
1,337,960	-				-0.2
1,337,960	-				-1.3
1,337,960	-				+1.1
1,337,960	-				+0.9
1,337,960	-				-0.3
1,337,960	-				+1.2
1,337,960	-				+0.6
1,337,960	-				+1.9
1,337,960	-				+1.6
1,337,996	+				-0.5
1,337,996	+				+1.1
1,337,997	-				+2.0
1,338,000	-				+1.0
1,338,000	-				-0.8
1,338,042	+				+1.6
1,338,042	+				+3.8
1,338,054	+				+1.6
1,338,054	+				+1.3
1,338,054	+				+0.1
1,338,054	+				+0.5
1,338,054	+				+0.7
1,338,093	+				-1.7
1,338,093	+				+0.2
1,338,094	-				-1.0
1,338,118	+				-0.4
1,338,118	+				+1.6
1,338,118	+				+1.5
1,338,118	+				-0.2
1,338,118	+				+0.8
1,338,118	+				-0.7
1,338,118	+				+1.2
1,338,119	-				-0.2
1,338,119	-				-0.9
1,338,119	-				+1.2
1,338,119	-				+3.3
1,338,119	-				+2.4
1,338,119	-				-1.8
1,338,119	-				-0.4
1,338,119	-				-2.5
1,338,119	-				+0.1
1,338,119	-				+1.4
1,338,119	-				-0.5
1,338,124	+				-0.8
1,338,124	+				-1.6
1,338,124	+				+1.1
1,338,124	+				-2.1
1,338,125	-				-0.3
1,338,125	-				-1.6
1,338,125	-				+0.4
1,338,154	+				-1.0
1,338,154	+				+0.2
1,338,155	-				+0.9
1,338,184	+				+1.0
1,338,185	+				+0.0
1,338,185	+				+1.1
1,338,185	+				-0.8
1,338,185	+				+2.5
1,338,185	+				-1.8
1,338,185	+				+0.7
1,338,185	+				-1.5
1,338,186	-				-1.9
1,338,186	-				+1.1
1,338,186	-				+0.3
1,338,186	-				+0.2
1,338,186	-				-0.5
1,338,234	+				+1.0
1,338,234	+				+0.4
1,338,234	+				-0.9
1,338,234	+				-0.1
1,338,234	+				-1.4
1,338,235	-				-2.6
1,338,235	-				-1.8
1,338,235	-				+0.5
1,338,235	-				+3.0
1,338,235	-				+0.8
1,338,235	-				+1.0
1,338,235	-				+0.7
1,338,249	+				+0.6
1,338,249	+				+1.3
1,338,249	+				-0.0
1,338,249	+				-0.5
1,338,249	+				+1.4
1,338,250	-				+1.0
1,338,259	+				+1.3
1,338,259	+				-1.5
1,338,259	+				-1.1
1,338,259	+				+0.9
1,338,259	+				+1.7
1,338,259	+				+1.8
1,338,259	+				-0.3
1,338,259	+				+0.5
1,338,259	+				-0.8
1,338,259	+				+1.1
1,338,259	+				+2.1
1,338,259	+				-1.0
1,338,259	+				-0.4
1,338,259	+				+1.4
1,338,259	+				-0.3
1,338,259	+				+0.3
1,338,259	+				+0.4
1,338,259	+				+2.5
1,338,259	+				+1.5
1,338,260	-				-0.2
1,338,260	-				+0.9
1,338,260	-				+1.2
1,338,260	-				+2.0
1,338,260	-				+0.3
1,338,260	-				+0.7
1,338,260	-				-1.4
1,338,260	-				-0.3
1,338,260	-				-1.9
1,338,260	-				+1.1
1,338,260	-				-0.9
1,338,260	-				+0.3
1,338,260	-				+1.8
1,338,260	-				-0.3
1,338,260	-				+0.7
1,338,260	-				+0.3
1,338,260	-				-0.0
1,338,260	-				+0.3
1,338,260	-				+0.3
1,338,260	-				-0.5
1,338,260	-				-1.5
1,338,260	-				+1.2
1,338,260	-				-1.0
1,338,260	-				+1.0
1,338,260	-				-1.0
1,338,345	+		PFLU_RS05980	0.10	-2.5
1,338,345	+		PFLU_RS05980	0.10	+0.6
1,338,380	+		PFLU_RS05980	0.13	+0.2
1,338,380	+		PFLU_RS05980	0.13	-1.5
1,338,380	+		PFLU_RS05980	0.13	-0.4
1,338,381	-		PFLU_RS05980	0.13	+0.9
1,338,381	-		PFLU_RS05980	0.13	-2.4
1,338,381	-		PFLU_RS05980	0.13	-0.2
1,338,381	-		PFLU_RS05980	0.13	+1.0
1,338,552	+		PFLU_RS05980	0.25	-0.1
1,338,552	+		PFLU_RS05980	0.25	-1.8
1,338,552	+		PFLU_RS05980	0.25	+0.0
1,338,552	+		PFLU_RS05980	0.25	+1.5
1,338,552	+		PFLU_RS05980	0.25	+0.1
1,338,553	-		PFLU_RS05980	0.25	+0.9
1,338,553	-		PFLU_RS05980	0.25	+0.9
1,338,559	+		PFLU_RS05980	0.25	+1.6
1,338,559	+		PFLU_RS05980	0.25	+0.7
1,338,560	-		PFLU_RS05980	0.25	-0.8
1,338,655	+		PFLU_RS05980	0.32	+1.5
1,338,699	+		PFLU_RS05980	0.35	+1.2
1,338,699	+		PFLU_RS05980	0.35	-3.0
1,338,700	-		PFLU_RS05980	0.35	+0.2
1,338,700	-		PFLU_RS05980	0.35	-2.3
1,338,747	+		PFLU_RS05980	0.38	-0.4
1,338,747	+		PFLU_RS05980	0.38	+0.1
1,338,747	+		PFLU_RS05980	0.38	-1.0
1,338,747	+		PFLU_RS05980	0.38	-0.1
1,338,747	+		PFLU_RS05980	0.38	+1.1
1,338,748	-		PFLU_RS05980	0.38	-2.5
1,338,748	-		PFLU_RS05980	0.38	-0.6
1,338,748	-		PFLU_RS05980	0.38	-1.5
1,338,748	-		PFLU_RS05980	0.38	-0.3
1,338,748	-		PFLU_RS05980	0.38	+1.0
1,338,748	-		PFLU_RS05980	0.38	+1.2
1,338,748	-		PFLU_RS05980	0.38	+0.4
1,338,748	-		PFLU_RS05980	0.38	-0.2
1,338,748	-		PFLU_RS05980	0.38	+1.7
1,338,748	-		PFLU_RS05980	0.38	+1.8
1,338,748	-		PFLU_RS05980	0.38	+1.7
1,338,766	-		PFLU_RS05980	0.40	+1.3
1,338,804	+		PFLU_RS05980	0.42	+1.1
1,338,804	+		PFLU_RS05980	0.42	+0.3
1,338,804	+		PFLU_RS05980	0.42	+0.0
1,338,804	+		PFLU_RS05980	0.42	+0.4
1,338,931	+		PFLU_RS05980	0.51	-1.2
1,338,931	+		PFLU_RS05980	0.51	-1.4
1,338,931	+		PFLU_RS05980	0.51	+0.6
1,338,932	-		PFLU_RS05980	0.51	+2.4
1,338,979	+		PFLU_RS05980	0.55	+1.4
1,338,979	+		PFLU_RS05980	0.55	-0.4
1,338,979	+		PFLU_RS05980	0.55	-1.2
1,338,979	+		PFLU_RS05980	0.55	-0.8
1,338,980	-		PFLU_RS05980	0.55	+1.0
1,338,980	-		PFLU_RS05980	0.55	-1.7
1,338,980	-		PFLU_RS05980	0.55	-2.2
1,338,980	-		PFLU_RS05980	0.55	+0.7
1,338,980	-		PFLU_RS05980	0.55	-1.2
1,339,055	-		PFLU_RS05980	0.60	-0.4
1,339,123	+		PFLU_RS05980	0.65	+2.8
1,339,123	+		PFLU_RS05980	0.65	-0.5
1,339,123	+		PFLU_RS05980	0.65	+1.9
1,339,123	+		PFLU_RS05980	0.65	-0.8
1,339,123	+		PFLU_RS05980	0.65	+1.5
1,339,124	-		PFLU_RS05980	0.65	-1.2
1,339,124	-		PFLU_RS05980	0.65	+0.1
1,339,124	-		PFLU_RS05980	0.65	-0.5
1,339,124	-		PFLU_RS05980	0.65	-0.4
1,339,176	+		PFLU_RS05980	0.68	+0.1
1,339,176	+		PFLU_RS05980	0.68	+0.3
1,339,177	-		PFLU_RS05980	0.69	+0.6
1,339,177	-		PFLU_RS05980	0.69	-0.0
1,339,248	+		PFLU_RS05980	0.74	+0.3
1,339,248	+		PFLU_RS05980	0.74	+0.1
1,339,248	+		PFLU_RS05980	0.74	-1.7
1,339,249	-		PFLU_RS05980	0.74	-0.4
1,339,249	-		PFLU_RS05980	0.74	-2.2
1,339,249	-		PFLU_RS05980	0.74	+1.7
1,339,249	-		PFLU_RS05980	0.74	-0.2
1,339,249	-		PFLU_RS05980	0.74	-0.7
1,339,347	+		PFLU_RS05980	0.80	-1.0
1,339,347	+		PFLU_RS05980	0.80	+0.1
1,339,347	+		PFLU_RS05980	0.80	-1.7
1,339,348	-		PFLU_RS05980	0.81	-0.4
1,339,348	-		PFLU_RS05980	0.81	+1.3
1,339,348	-		PFLU_RS05980	0.81	-0.4
1,339,539	-				+0.9
1,339,563	-				+0.8
1,339,611	-				+1.4
1,339,611	-				+0.5
1,339,611	-				-2.1
1,339,644	+				+2.4
1,339,644	+				-0.8
1,339,644	+				-0.2
1,339,644	+				-1.2
1,339,644	+				+2.6
1,339,644	+				+0.1
1,339,644	+				+0.5
1,339,644	+				+1.3
1,339,644	+				+0.5
1,339,645	-				-1.3
1,339,645	-				-0.5
1,339,645	-				+1.3
1,339,645	-				-0.5
1,339,645	-				-0.6
1,339,645	-				+0.6
1,339,645	-				+0.1
1,339,645	-				-0.0
1,339,645	-				-0.8
1,339,645	-				+1.5
1,339,645	-				-1.5
1,339,645	-				+1.1
1,339,645	-				-0.9
1,339,650	+				+0.5
1,339,651	-				+0.3
1,339,651	-				+0.9
1,339,651	-				-2.1
1,339,651	-				-0.8
1,339,651	-				-0.7
1,339,651	-				+0.8
1,339,662	+				+0.3
1,339,662	+				-1.2
1,339,662	+				+0.6
1,339,662	+				+0.2
1,339,662	+				-0.2
1,339,662	+				-3.0
1,339,662	+				-1.9
1,339,662	+				-0.8
1,339,662	+				-3.0
1,339,662	+				+0.0
1,339,662	+				-0.1
1,339,662	+				+1.3
1,339,663	-				-0.5
1,339,663	-				+0.8
1,339,673	+				+0.8
1,339,673	+				+1.4
1,339,674	-				+1.4
1,339,674	-				-0.0
1,339,674	-				+4.1
1,339,733	+				+0.8
1,339,733	+				+0.6
1,339,733	+				-1.7
1,339,733	+				-1.0
1,339,733	+				-2.6
1,339,733	+				+0.4
1,339,734	-				+1.4
1,339,734	-				-0.9
1,339,734	-				+0.7
1,339,734	-				-0.1
1,339,734	-				+1.9
1,339,734	-				-0.4
1,339,734	-				-0.5
1,339,734	-				+0.6
1,339,734	-				-1.5
1,339,734	-				+1.0
1,339,737	+				-0.3
1,339,778	+				+0.1
1,339,778	+				+0.9
1,339,778	+				-1.4
1,339,778	+				+1.8
1,339,778	+				+0.8
1,339,778	+				-2.8
1,339,779	-				-1.8
1,339,779	-				+0.6
1,339,779	-				+1.2
1,339,779	-				+1.7
1,339,781	+				-0.0
1,339,781	+				-1.2
1,339,781	+				-2.3
1,339,781	+				+1.5
1,339,781	+				-1.5
1,339,782	-				+0.7
1,339,782	-				-0.6
1,339,864	+		PFLU_RS05985	0.16	-0.3
1,339,865	-		PFLU_RS05985	0.16	-0.7
1,340,003	+		PFLU_RS05985	0.33	+1.2
1,340,003	+		PFLU_RS05985	0.33	-1.2
1,340,003	+		PFLU_RS05985	0.33	+0.9
1,340,003	+		PFLU_RS05985	0.33	+1.0
1,340,004	-		PFLU_RS05985	0.34	+1.5
1,340,004	-		PFLU_RS05985	0.34	+0.6
1,340,004	-		PFLU_RS05985	0.34	-2.7
1,340,096	+		PFLU_RS05985	0.45	+1.0
1,340,096	+		PFLU_RS05985	0.45	+1.6
1,340,096	+		PFLU_RS05985	0.45	-2.5
1,340,097	-		PFLU_RS05985	0.45	-1.7
1,340,271	-		PFLU_RS05985	0.67	+1.3
1,340,450	+		PFLU_RS05985	0.89	+1.4
1,340,450	+		PFLU_RS05985	0.89	+0.2
1,340,451	-		PFLU_RS05985	0.89	+0.2
1,340,451	-		PFLU_RS05985	0.89	-0.1
1,340,451	-		PFLU_RS05985	0.89	-0.0
1,340,574	+				-2.1
1,340,574	+				+0.5
1,340,574	+				+0.4
1,340,574	+				+1.8
1,340,574	+				-0.5
1,340,574	+				-0.0
1,340,574	+				+1.1
1,340,575	-				-1.1
1,340,575	-				+1.4
1,340,575	-				-0.2