Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS02025

Experiment: 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS02020 and PFLU_RS02025 are separated by 4 nucleotidesPFLU_RS02025 and PFLU_RS02030 are separated by 125 nucleotides PFLU_RS02020: PFLU_RS02020 - type IV pilus secretin PilQ family protein, at 453,657 to 454,982 _RS02020 PFLU_RS02025: PFLU_RS02025 - shikimate kinase AroK, at 454,987 to 455,505 _RS02025 PFLU_RS02030: PFLU_RS02030 - 3-dehydroquinate synthase, at 455,631 to 456,731 _RS02030 Position (kb) 454 455 456Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 454.050 kb on + strand, within PFLU_RS02020at 454.051 kb on - strand, within PFLU_RS02020at 454.051 kb on - strand, within PFLU_RS02020at 454.051 kb on - strand, within PFLU_RS02020at 454.051 kb on - strand, within PFLU_RS02020at 454.051 kb on - strand, within PFLU_RS02020at 454.165 kb on - strand, within PFLU_RS02020at 454.272 kb on + strand, within PFLU_RS02020at 454.273 kb on - strand, within PFLU_RS02020at 454.320 kb on - strand, within PFLU_RS02020at 454.445 kb on + strand, within PFLU_RS02020at 454.445 kb on + strand, within PFLU_RS02020at 454.445 kb on + strand, within PFLU_RS02020at 454.446 kb on - strand, within PFLU_RS02020at 454.446 kb on - strand, within PFLU_RS02020at 454.446 kb on - strand, within PFLU_RS02020at 454.717 kb on - strand, within PFLU_RS02020at 454.717 kb on - strand, within PFLU_RS02020at 454.717 kb on - strand, within PFLU_RS02020at 454.841 kb on - strand, within PFLU_RS02020at 454.841 kb on - strand, within PFLU_RS02020at 454.844 kb on + strand, within PFLU_RS02020at 454.844 kb on + strand, within PFLU_RS02020at 454.844 kb on + strand, within PFLU_RS02020at 454.844 kb on + strand, within PFLU_RS02020at 454.844 kb on + strand, within PFLU_RS02020at 454.844 kb on + strand, within PFLU_RS02020at 454.844 kb on + strand, within PFLU_RS02020at 454.845 kb on - strand, within PFLU_RS02020at 454.845 kb on - strand, within PFLU_RS02020at 454.845 kb on - strand, within PFLU_RS02020at 454.845 kb on - strand, within PFLU_RS02020at 454.845 kb on - strand, within PFLU_RS02020at 454.845 kb on - strand, within PFLU_RS02020at 454.845 kb on - strand, within PFLU_RS02020at 454.845 kb on - strand, within PFLU_RS02020at 454.845 kb on - strand, within PFLU_RS02020at 454.845 kb on - strand, within PFLU_RS02020at 454.845 kb on - strand, within PFLU_RS02020at 454.872 kb on + strandat 454.930 kb on + strandat 454.930 kb on + strandat 454.930 kb on + strandat 454.930 kb on + strandat 454.930 kb on + strandat 454.931 kb on - strandat 454.931 kb on - strandat 454.946 kb on + strandat 454.946 kb on + strandat 454.947 kb on - strandat 454.947 kb on - strandat 454.950 kb on - strandat 455.525 kb on + strandat 455.525 kb on + strandat 455.526 kb on - strandat 455.543 kb on - strandat 455.565 kb on - strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.609 kb on + strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.610 kb on - strandat 455.642 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS
remove
454,050 + PFLU_RS02020 0.30 +0.2
454,051 - PFLU_RS02020 0.30 -0.6
454,051 - PFLU_RS02020 0.30 +0.9
454,051 - PFLU_RS02020 0.30 -0.8
454,051 - PFLU_RS02020 0.30 +0.1
454,051 - PFLU_RS02020 0.30 +0.7
454,165 - PFLU_RS02020 0.38 +1.3
454,272 + PFLU_RS02020 0.46 +1.4
454,273 - PFLU_RS02020 0.46 -0.3
454,320 - PFLU_RS02020 0.50 +1.1
454,445 + PFLU_RS02020 0.59 -1.5
454,445 + PFLU_RS02020 0.59 -1.1
454,445 + PFLU_RS02020 0.59 +0.8
454,446 - PFLU_RS02020 0.60 +0.8
454,446 - PFLU_RS02020 0.60 +1.1
454,446 - PFLU_RS02020 0.60 +1.2
454,717 - PFLU_RS02020 0.80 +0.5
454,717 - PFLU_RS02020 0.80 -1.9
454,717 - PFLU_RS02020 0.80 +0.6
454,841 - PFLU_RS02020 0.89 +0.7
454,841 - PFLU_RS02020 0.89 +1.1
454,844 + PFLU_RS02020 0.90 -0.9
454,844 + PFLU_RS02020 0.90 +0.0
454,844 + PFLU_RS02020 0.90 -0.9
454,844 + PFLU_RS02020 0.90 -2.2
454,844 + PFLU_RS02020 0.90 +0.4
454,844 + PFLU_RS02020 0.90 -1.3
454,844 + PFLU_RS02020 0.90 +0.6
454,845 - PFLU_RS02020 0.90 -1.6
454,845 - PFLU_RS02020 0.90 -0.4
454,845 - PFLU_RS02020 0.90 +0.7
454,845 - PFLU_RS02020 0.90 -1.3
454,845 - PFLU_RS02020 0.90 -1.1
454,845 - PFLU_RS02020 0.90 +0.4
454,845 - PFLU_RS02020 0.90 -2.7
454,845 - PFLU_RS02020 0.90 +1.1
454,845 - PFLU_RS02020 0.90 +1.1
454,845 - PFLU_RS02020 0.90 -1.9
454,845 - PFLU_RS02020 0.90 +0.6
454,872 + +1.1
454,930 + +0.3
454,930 + +0.5
454,930 + +0.2
454,930 + -0.7
454,930 + -0.8
454,931 - +0.5
454,931 - -2.1
454,946 + +1.0
454,946 + -0.5
454,947 - -0.9
454,947 - -2.4
454,950 - +0.5
455,525 + -2.6
455,525 + -1.6
455,526 - +1.7
455,543 - +0.3
455,565 - -2.4
455,609 + -3.0
455,609 + -1.5
455,609 + +0.5
455,609 + -1.7
455,609 + -1.3
455,609 + +2.4
455,609 + -1.4
455,609 + +0.1
455,609 + -0.5
455,609 + +0.8
455,609 + -0.5
455,609 + -0.6
455,609 + -2.0
455,609 + +0.7
455,609 + -2.4
455,609 + -0.9
455,609 + -0.5
455,609 + -3.0
455,609 + +1.1
455,609 + +0.3
455,609 + -2.5
455,609 + +1.1
455,609 + -2.5
455,609 + -2.7
455,609 + +1.2
455,610 - -0.5
455,610 - -0.3
455,610 - -0.5
455,610 - +0.1
455,610 - +0.5
455,610 - -0.3
455,610 - +0.5
455,610 - +0.5
455,610 - +1.1
455,610 - +0.5
455,610 - -0.3
455,610 - +1.1
455,610 - -0.5
455,610 - +0.1
455,642 + -0.7

Or see this region's nucleotide sequence