Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0559

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C)
693,831	-				+0.1
693,831	-				-0.5
693,927	+		BT0558	0.18	-0.0
693,931	+		BT0558	0.19	-3.1
694,018	+		BT0558	0.27	-1.7
694,018	+		BT0558	0.27	-0.5
694,204	+		BT0558	0.45	+1.5
694,207	-		BT0558	0.45	+1.5
694,315	+		BT0558	0.55	-0.4
694,315	+		BT0558	0.55	-0.8
694,357	-		BT0558	0.59	+1.5
694,376	+		BT0558	0.61	-1.4
694,427	-		BT0558	0.66	+0.5
694,596	+		BT0558	0.82	+0.5
694,663	-		BT0558	0.88	-0.5
694,705	+				+0.1
694,707	+				+0.2
694,707	+				-0.2
694,883	-		BT0559	0.11	-0.8
694,934	-		BT0559	0.16	+0.0
694,987	+		BT0559	0.22	-0.6
694,988	-		BT0559	0.22	+0.4
695,001	-		BT0559	0.24	-0.4
695,031	-		BT0559	0.27	+2.4
695,059	-		BT0559	0.30	-1.0
695,148	+		BT0559	0.40	+2.2
695,151	-		BT0559	0.40	+1.2
695,151	-		BT0559	0.40	-2.3
695,151	-		BT0559	0.40	+1.1
695,160	+		BT0559	0.41	+0.4
695,160	+		BT0559	0.41	+0.5
695,168	-		BT0559	0.42	-1.9
695,437	-		BT0559	0.72	-0.3
695,551	-		BT0559	0.85	+1.2
695,628	+				-0.0
695,776	-				+0.1
695,791	+				-0.5
695,799	-				-1.7
695,807	-				-2.1
695,915	-				-1.0
695,921	-				+1.5
695,949	-				+0.7
696,082	+		BT0560	0.16	+0.3
696,246	-		BT0560	0.30	+0.5
696,250	-		BT0560	0.30	-1.7
696,280	-		BT0560	0.32	+1.2
696,474	+		BT0560	0.48	-2.3
696,526	+		BT0560	0.52	+1.9