Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28060

Experiment: Anaerobic, acetate donor; nitrate and iron

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28050 and AO353_28055 are separated by 2 nucleotidesAO353_28055 and AO353_28060 overlap by 4 nucleotides AO353_28050: AO353_28050 - exonuclease SbcC, at 6,113,945 to 6,115,921 _28050 AO353_28055: AO353_28055 - hypothetical protein, at 6,115,924 to 6,116,496 _28055 AO353_28060: AO353_28060 - hypothetical protein, at 6,116,493 to 6,117,707 _28060 Position (kb) 6116 6117 6118Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 6115.654 kb on - strand, within AO353_28050at 6115.669 kb on - strand, within AO353_28050at 6115.670 kb on + strand, within AO353_28050at 6115.831 kb on - strandat 6115.953 kb on - strandat 6116.136 kb on - strand, within AO353_28055at 6116.142 kb on + strand, within AO353_28055at 6116.143 kb on - strand, within AO353_28055at 6116.143 kb on - strand, within AO353_28055at 6116.197 kb on - strand, within AO353_28055at 6116.276 kb on + strand, within AO353_28055at 6116.473 kb on + strandat 6116.586 kb on + strandat 6116.735 kb on - strand, within AO353_28060at 6116.735 kb on - strand, within AO353_28060at 6116.767 kb on - strand, within AO353_28060at 6116.970 kb on - strand, within AO353_28060at 6116.989 kb on + strand, within AO353_28060at 6117.063 kb on + strand, within AO353_28060at 6117.125 kb on - strand, within AO353_28060at 6117.178 kb on + strand, within AO353_28060at 6117.178 kb on + strand, within AO353_28060at 6117.179 kb on - strand, within AO353_28060at 6117.181 kb on - strand, within AO353_28060at 6117.181 kb on - strand, within AO353_28060at 6117.181 kb on - strand, within AO353_28060at 6117.222 kb on - strand, within AO353_28060at 6117.222 kb on - strand, within AO353_28060at 6117.294 kb on + strand, within AO353_28060at 6117.362 kb on + strand, within AO353_28060at 6117.393 kb on - strand, within AO353_28060at 6117.403 kb on - strand, within AO353_28060at 6117.617 kb on - strandat 6117.617 kb on - strandat 6117.743 kb on + strandat 6117.795 kb on + strandat 6117.795 kb on + strandat 6117.795 kb on + strandat 6117.795 kb on + strandat 6117.795 kb on + strandat 6117.795 kb on + strandat 6117.795 kb on + strandat 6117.796 kb on - strandat 6117.796 kb on - strandat 6117.796 kb on - strandat 6117.796 kb on - strandat 6117.829 kb on - strandat 6117.829 kb on - strandat 6117.829 kb on - strandat 6117.829 kb on - strandat 6117.843 kb on + strandat 6117.843 kb on + strandat 6117.843 kb on + strandat 6117.843 kb on + strandat 6117.843 kb on + strandat 6117.844 kb on - strandat 6117.844 kb on - strandat 6117.844 kb on - strandat 6117.849 kb on + strandat 6117.854 kb on + strandat 6117.854 kb on + strandat 6117.911 kb on - strandat 6117.935 kb on + strandat 6117.935 kb on + strandat 6117.935 kb on + strandat 6117.935 kb on + strandat 6117.935 kb on + strandat 6117.935 kb on + strandat 6117.935 kb on + strandat 6117.935 kb on + strandat 6117.936 kb on - strandat 6117.936 kb on - strandat 6117.936 kb on - strandat 6117.936 kb on - strandat 6117.936 kb on - strandat 6117.936 kb on - strandat 6117.936 kb on - strandat 6117.939 kb on + strandat 6117.939 kb on + strandat 6117.940 kb on - strandat 6118.104 kb on + strandat 6118.104 kb on + strandat 6118.104 kb on + strandat 6118.104 kb on + strandat 6118.105 kb on - strandat 6118.169 kb on + strandat 6118.170 kb on - strandat 6118.170 kb on - strandat 6118.170 kb on - strandat 6118.170 kb on - strandat 6118.170 kb on - strandat 6118.175 kb on - strandat 6118.246 kb on + strandat 6118.303 kb on - strandat 6118.313 kb on - strandat 6118.338 kb on + strandat 6118.339 kb on - strandat 6118.419 kb on - strandat 6118.438 kb on - strandat 6118.438 kb on - strandat 6118.438 kb on - strandat 6118.528 kb on + strandat 6118.610 kb on - strandat 6118.654 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate and iron
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6,115,654 - AO353_28050 0.86 -0.3
6,115,669 - AO353_28050 0.87 -3.4
6,115,670 + AO353_28050 0.87 -1.5
6,115,831 - -0.4
6,115,953 - -1.4
6,116,136 - AO353_28055 0.37 -1.5
6,116,142 + AO353_28055 0.38 -2.4
6,116,143 - AO353_28055 0.38 -1.6
6,116,143 - AO353_28055 0.38 -1.4
6,116,197 - AO353_28055 0.48 +1.0
6,116,276 + AO353_28055 0.61 -0.6
6,116,473 + +0.1
6,116,586 + -0.4
6,116,735 - AO353_28060 0.20 -1.7
6,116,735 - AO353_28060 0.20 +1.0
6,116,767 - AO353_28060 0.23 -0.6
6,116,970 - AO353_28060 0.39 -0.9
6,116,989 + AO353_28060 0.41 -1.3
6,117,063 + AO353_28060 0.47 -0.6
6,117,125 - AO353_28060 0.52 +0.1
6,117,178 + AO353_28060 0.56 -2.2
6,117,178 + AO353_28060 0.56 -1.3
6,117,179 - AO353_28060 0.56 -0.6
6,117,181 - AO353_28060 0.57 -0.6
6,117,181 - AO353_28060 0.57 -2.2
6,117,181 - AO353_28060 0.57 +0.9
6,117,222 - AO353_28060 0.60 -2.3
6,117,222 - AO353_28060 0.60 -2.5
6,117,294 + AO353_28060 0.66 +0.4
6,117,362 + AO353_28060 0.72 -1.2
6,117,393 - AO353_28060 0.74 -3.1
6,117,403 - AO353_28060 0.75 +0.1
6,117,617 - -1.2
6,117,617 - -2.2
6,117,743 + +0.1
6,117,795 + -0.1
6,117,795 + +0.2
6,117,795 + -0.6
6,117,795 + +2.3
6,117,795 + -2.0
6,117,795 + -2.3
6,117,795 + -0.9
6,117,796 - +1.4
6,117,796 - -0.2
6,117,796 - +0.1
6,117,796 - +1.0
6,117,829 - +1.4
6,117,829 - +0.4
6,117,829 - -0.7
6,117,829 - +3.8
6,117,843 + +1.6
6,117,843 + -0.6
6,117,843 + +2.6
6,117,843 + -0.2
6,117,843 + -2.3
6,117,844 - +1.7
6,117,844 - +1.1
6,117,844 - -1.5
6,117,849 + -0.6
6,117,854 + +0.1
6,117,854 + +0.5
6,117,911 - +0.7
6,117,935 + +2.1
6,117,935 + -0.9
6,117,935 + +1.6
6,117,935 + -0.4
6,117,935 + +3.4
6,117,935 + +0.1
6,117,935 + +0.6
6,117,935 + -2.8
6,117,936 - +2.0
6,117,936 - +0.6
6,117,936 - -2.1
6,117,936 - +0.7
6,117,936 - +2.9
6,117,936 - +0.7
6,117,936 - -1.4
6,117,939 + -0.2
6,117,939 + -0.9
6,117,940 - -0.4
6,118,104 + -1.2
6,118,104 + +0.1
6,118,104 + -1.4
6,118,104 + -1.2
6,118,105 - +1.5
6,118,169 + -0.9
6,118,170 - -1.4
6,118,170 - -0.2
6,118,170 - +0.1
6,118,170 - -0.7
6,118,170 - -1.0
6,118,175 - -0.2
6,118,246 + +3.3
6,118,303 - +2.6
6,118,313 - +3.2
6,118,338 + -0.2
6,118,339 - -1.5
6,118,419 - -1.0
6,118,438 - +0.4
6,118,438 - -1.0
6,118,438 - -0.6
6,118,528 + +3.0
6,118,610 - +0.2
6,118,654 + +0.4

Or see this region's nucleotide sequence