Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25135

Experiment: Anaerobic, acetate donor; nitrate and iron

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25130 and AO353_25135 are separated by 29 nucleotidesAO353_25135 and AO353_25140 are separated by 75 nucleotides AO353_25130: AO353_25130 - ABC transporter, at 5,543,069 to 5,544,214 _25130 AO353_25135: AO353_25135 - glycosyl hydrolase family 32, at 5,544,244 to 5,545,713 _25135 AO353_25140: AO353_25140 - transcriptional regulator, at 5,545,789 to 5,546,781 _25140 Position (kb) 5544 5545 5546Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5543.319 kb on - strand, within AO353_25130at 5543.327 kb on + strand, within AO353_25130at 5543.633 kb on + strand, within AO353_25130at 5543.633 kb on + strand, within AO353_25130at 5543.633 kb on + strand, within AO353_25130at 5543.633 kb on + strand, within AO353_25130at 5543.633 kb on + strandat 5543.633 kb on + strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.732 kb on + strand, within AO353_25130at 5543.732 kb on + strand, within AO353_25130at 5543.733 kb on - strand, within AO353_25130at 5543.733 kb on - strand, within AO353_25130at 5543.733 kb on - strand, within AO353_25130at 5543.733 kb on - strand, within AO353_25130at 5543.851 kb on + strand, within AO353_25130at 5543.928 kb on + strand, within AO353_25130at 5543.928 kb on + strand, within AO353_25130at 5543.928 kb on + strand, within AO353_25130at 5543.928 kb on + strand, within AO353_25130at 5543.929 kb on - strand, within AO353_25130at 5543.981 kb on + strand, within AO353_25130at 5543.982 kb on - strand, within AO353_25130at 5543.999 kb on + strand, within AO353_25130at 5543.999 kb on + strand, within AO353_25130at 5543.999 kb on + strand, within AO353_25130at 5543.999 kb on + strand, within AO353_25130at 5543.999 kb on + strand, within AO353_25130at 5544.000 kb on - strand, within AO353_25130at 5544.000 kb on - strand, within AO353_25130at 5544.000 kb on - strand, within AO353_25130at 5544.000 kb on - strand, within AO353_25130at 5544.000 kb on - strand, within AO353_25130at 5544.104 kb on - strandat 5544.327 kb on + strandat 5544.327 kb on + strandat 5544.327 kb on + strandat 5544.328 kb on - strandat 5544.328 kb on - strandat 5544.373 kb on + strandat 5544.373 kb on + strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.388 kb on + strandat 5544.389 kb on - strandat 5544.400 kb on + strand, within AO353_25135at 5544.409 kb on + strand, within AO353_25135at 5544.409 kb on + strand, within AO353_25135at 5544.410 kb on - strandat 5544.439 kb on + strand, within AO353_25135at 5544.439 kb on + strand, within AO353_25135at 5544.439 kb on + strand, within AO353_25135at 5544.440 kb on - strand, within AO353_25135at 5544.440 kb on - strand, within AO353_25135at 5544.440 kb on - strand, within AO353_25135at 5544.561 kb on + strand, within AO353_25135at 5544.577 kb on + strand, within AO353_25135at 5544.577 kb on + strand, within AO353_25135at 5544.651 kb on + strand, within AO353_25135at 5544.737 kb on + strand, within AO353_25135at 5544.738 kb on - strand, within AO353_25135at 5544.738 kb on - strand, within AO353_25135at 5544.738 kb on - strand, within AO353_25135at 5544.738 kb on - strand, within AO353_25135at 5544.760 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.792 kb on - strand, within AO353_25135at 5544.792 kb on - strand, within AO353_25135at 5544.809 kb on - strand, within AO353_25135at 5544.809 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.923 kb on + strand, within AO353_25135at 5544.923 kb on + strand, within AO353_25135at 5544.923 kb on + strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.932 kb on - strand, within AO353_25135at 5544.961 kb on + strand, within AO353_25135at 5544.979 kb on + strand, within AO353_25135at 5544.980 kb on - strand, within AO353_25135at 5545.069 kb on + strand, within AO353_25135at 5545.070 kb on - strand, within AO353_25135at 5545.070 kb on - strand, within AO353_25135at 5545.085 kb on + strand, within AO353_25135at 5545.250 kb on + strand, within AO353_25135at 5545.250 kb on + strand, within AO353_25135at 5545.251 kb on - strand, within AO353_25135at 5545.273 kb on - strand, within AO353_25135at 5545.316 kb on + strand, within AO353_25135at 5545.411 kb on + strand, within AO353_25135at 5545.411 kb on + strand, within AO353_25135at 5545.412 kb on - strand, within AO353_25135at 5545.429 kb on + strand, within AO353_25135at 5545.429 kb on + strand, within AO353_25135at 5545.430 kb on - strand, within AO353_25135at 5545.432 kb on + strand, within AO353_25135at 5545.432 kb on + strand, within AO353_25135at 5545.433 kb on - strand, within AO353_25135at 5545.445 kb on + strand, within AO353_25135at 5545.728 kb on - strandat 5545.728 kb on - strandat 5545.886 kb on - strandat 5545.886 kb on - strandat 5545.886 kb on - strandat 5546.007 kb on + strand, within AO353_25140at 5546.007 kb on + strand, within AO353_25140at 5546.007 kb on + strand, within AO353_25140at 5546.008 kb on - strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.073 kb on - strand, within AO353_25140at 5546.073 kb on - strand, within AO353_25140at 5546.073 kb on - strand, within AO353_25140at 5546.073 kb on - strand, within AO353_25140at 5546.073 kb on - strand, within AO353_25140at 5546.077 kb on - strand, within AO353_25140at 5546.091 kb on - strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.258 kb on - strandat 5546.258 kb on - strand, within AO353_25140at 5546.258 kb on - strand, within AO353_25140at 5546.258 kb on - strand, within AO353_25140at 5546.258 kb on - strand, within AO353_25140at 5546.258 kb on - strand, within AO353_25140at 5546.294 kb on + strand, within AO353_25140at 5546.294 kb on + strand, within AO353_25140at 5546.294 kb on + strand, within AO353_25140at 5546.294 kb on + strand, within AO353_25140at 5546.295 kb on - strand, within AO353_25140at 5546.295 kb on - strand, within AO353_25140at 5546.334 kb on + strand, within AO353_25140at 5546.434 kb on + strand, within AO353_25140at 5546.434 kb on + strand, within AO353_25140at 5546.435 kb on - strand, within AO353_25140at 5546.435 kb on - strand, within AO353_25140at 5546.435 kb on - strand, within AO353_25140at 5546.435 kb on - strand, within AO353_25140at 5546.500 kb on - strand, within AO353_25140at 5546.542 kb on - strand, within AO353_25140at 5546.542 kb on - strand, within AO353_25140at 5546.622 kb on + strand, within AO353_25140at 5546.622 kb on + strand, within AO353_25140at 5546.622 kb on + strand, within AO353_25140at 5546.622 kb on + strand, within AO353_25140at 5546.622 kb on + strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.667 kb on - strand, within AO353_25140at 5546.667 kb on - strand, within AO353_25140at 5546.667 kb on - strand, within AO353_25140at 5546.677 kb on + strand, within AO353_25140at 5546.677 kb on + strand, within AO353_25140at 5546.680 kb on + strand, within AO353_25140at 5546.681 kb on - strand, within AO353_25140at 5546.681 kb on - strand, within AO353_25140

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate and iron
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5,543,319 - AO353_25130 0.22 +0.4
5,543,327 + AO353_25130 0.23 -1.2
5,543,633 + AO353_25130 0.49 -1.9
5,543,633 + AO353_25130 0.49 -0.5
5,543,633 + AO353_25130 0.49 -0.0
5,543,633 + AO353_25130 0.49 -1.8
5,543,633 + -0.8
5,543,633 + AO353_25130 0.49 -1.1
5,543,634 - AO353_25130 0.49 -1.4
5,543,634 - AO353_25130 0.49 +0.4
5,543,634 - AO353_25130 0.49 -1.2
5,543,634 - AO353_25130 0.49 +0.4
5,543,634 - AO353_25130 0.49 -0.4
5,543,634 - AO353_25130 0.49 -0.6
5,543,732 + AO353_25130 0.58 +1.2
5,543,732 + AO353_25130 0.58 -1.5
5,543,733 - AO353_25130 0.58 -1.4
5,543,733 - AO353_25130 0.58 +1.2
5,543,733 - AO353_25130 0.58 +2.6
5,543,733 - AO353_25130 0.58 +1.7
5,543,851 + AO353_25130 0.68 +1.6
5,543,928 + AO353_25130 0.75 -1.2
5,543,928 + AO353_25130 0.75 +1.2
5,543,928 + AO353_25130 0.75 +0.1
5,543,928 + AO353_25130 0.75 -1.5
5,543,929 - AO353_25130 0.75 -1.4
5,543,981 + AO353_25130 0.80 +1.2
5,543,982 - AO353_25130 0.80 +0.0
5,543,999 + AO353_25130 0.81 -0.2
5,543,999 + AO353_25130 0.81 -0.6
5,543,999 + AO353_25130 0.81 -2.2
5,543,999 + AO353_25130 0.81 +0.1
5,543,999 + AO353_25130 0.81 -0.4
5,544,000 - AO353_25130 0.81 +1.1
5,544,000 - AO353_25130 0.81 +1.2
5,544,000 - AO353_25130 0.81 -1.9
5,544,000 - AO353_25130 0.81 +3.2
5,544,000 - AO353_25130 0.81 -0.5
5,544,104 - +0.6
5,544,327 + +0.5
5,544,327 + -1.8
5,544,327 + +0.4
5,544,328 - -0.2
5,544,328 - -0.2
5,544,373 + +1.7
5,544,373 + +0.9
5,544,374 - +0.1
5,544,374 - +0.4
5,544,374 - -1.8
5,544,374 - +0.8
5,544,374 - +0.4
5,544,374 - -0.6
5,544,374 - -2.2
5,544,388 + -1.3
5,544,389 - -1.1
5,544,400 + AO353_25135 0.11 +0.8
5,544,409 + AO353_25135 0.11 -0.4
5,544,409 + AO353_25135 0.11 +2.6
5,544,410 - +0.8
5,544,439 + AO353_25135 0.13 +0.9
5,544,439 + AO353_25135 0.13 -1.6
5,544,439 + AO353_25135 0.13 -0.6
5,544,440 - AO353_25135 0.13 -0.9
5,544,440 - AO353_25135 0.13 +1.0
5,544,440 - AO353_25135 0.13 +0.6
5,544,561 + AO353_25135 0.22 +0.1
5,544,577 + AO353_25135 0.23 +1.6
5,544,577 + AO353_25135 0.23 -1.8
5,544,651 + AO353_25135 0.28 +1.3
5,544,737 + AO353_25135 0.34 +0.1
5,544,738 - AO353_25135 0.34 -1.3
5,544,738 - AO353_25135 0.34 -0.9
5,544,738 - AO353_25135 0.34 -1.2
5,544,738 - AO353_25135 0.34 +1.1
5,544,760 + AO353_25135 0.35 -2.7
5,544,791 + AO353_25135 0.37 -0.6
5,544,791 + AO353_25135 0.37 +0.1
5,544,791 + AO353_25135 0.37 -1.1
5,544,791 + AO353_25135 0.37 -0.2
5,544,791 + AO353_25135 0.37 +1.5
5,544,792 - AO353_25135 0.37 +0.1
5,544,792 - AO353_25135 0.37 -1.9
5,544,809 - AO353_25135 0.38 +2.2
5,544,809 - AO353_25135 0.38 -2.0
5,544,848 - AO353_25135 0.41 -0.4
5,544,848 - AO353_25135 0.41 +0.8
5,544,848 - AO353_25135 0.41 -2.8
5,544,848 - AO353_25135 0.41 -2.3
5,544,877 + AO353_25135 0.43 -2.1
5,544,877 + AO353_25135 0.43 +1.1
5,544,877 + AO353_25135 0.43 +0.8
5,544,877 + AO353_25135 0.43 +0.2
5,544,877 + AO353_25135 0.43 -0.9
5,544,878 - AO353_25135 0.43 +0.7
5,544,878 - AO353_25135 0.43 +0.1
5,544,878 - AO353_25135 0.43 -0.8
5,544,878 - AO353_25135 0.43 +1.6
5,544,878 - AO353_25135 0.43 -1.1
5,544,878 - AO353_25135 0.43 +0.1
5,544,879 + AO353_25135 0.43 -1.2
5,544,879 + AO353_25135 0.43 +0.4
5,544,879 + AO353_25135 0.43 -1.7
5,544,879 + AO353_25135 0.43 +0.7
5,544,879 + AO353_25135 0.43 +1.6
5,544,879 + AO353_25135 0.43 +0.7
5,544,879 + AO353_25135 0.43 -1.6
5,544,879 + AO353_25135 0.43 -0.4
5,544,879 + AO353_25135 0.43 -0.4
5,544,879 + AO353_25135 0.43 -1.5
5,544,880 - AO353_25135 0.43 +1.6
5,544,880 - AO353_25135 0.43 +0.4
5,544,880 - AO353_25135 0.43 -0.4
5,544,880 - AO353_25135 0.43 +1.4
5,544,880 - AO353_25135 0.43 +0.4
5,544,880 - AO353_25135 0.43 -2.2
5,544,880 - AO353_25135 0.43 +0.7
5,544,880 - AO353_25135 0.43 +0.8
5,544,880 - AO353_25135 0.43 -0.4
5,544,880 - AO353_25135 0.43 +1.4
5,544,880 - AO353_25135 0.43 -1.6
5,544,923 + AO353_25135 0.46 -1.5
5,544,923 + AO353_25135 0.46 -0.9
5,544,923 + AO353_25135 0.46 +1.4
5,544,924 - AO353_25135 0.46 -0.9
5,544,924 - AO353_25135 0.46 -1.5
5,544,924 - AO353_25135 0.46 -0.6
5,544,924 - AO353_25135 0.46 -0.2
5,544,932 - AO353_25135 0.47 -1.2
5,544,961 + AO353_25135 0.49 -0.5
5,544,979 + AO353_25135 0.50 -1.6
5,544,980 - AO353_25135 0.50 +0.8
5,545,069 + AO353_25135 0.56 +0.1
5,545,070 - AO353_25135 0.56 +1.0
5,545,070 - AO353_25135 0.56 +1.9
5,545,085 + AO353_25135 0.57 -1.6
5,545,250 + AO353_25135 0.68 -0.4
5,545,250 + AO353_25135 0.68 -2.0
5,545,251 - AO353_25135 0.69 +1.8
5,545,273 - AO353_25135 0.70 -1.3
5,545,316 + AO353_25135 0.73 -2.6
5,545,411 + AO353_25135 0.79 +0.6
5,545,411 + AO353_25135 0.79 -1.1
5,545,412 - AO353_25135 0.79 -2.8
5,545,429 + AO353_25135 0.81 -1.7
5,545,429 + AO353_25135 0.81 -3.2
5,545,430 - AO353_25135 0.81 +0.9
5,545,432 + AO353_25135 0.81 +1.6
5,545,432 + AO353_25135 0.81 -1.3
5,545,433 - AO353_25135 0.81 +2.4
5,545,445 + AO353_25135 0.82 -1.8
5,545,728 - -0.9
5,545,728 - +1.9
5,545,886 - +2.0
5,545,886 - -0.7
5,545,886 - +1.6
5,546,007 + AO353_25140 0.22 +1.0
5,546,007 + AO353_25140 0.22 -2.7
5,546,007 + AO353_25140 0.22 +3.0
5,546,008 - AO353_25140 0.22 +0.6
5,546,072 + AO353_25140 0.28 -2.3
5,546,072 + AO353_25140 0.28 -1.2
5,546,072 + AO353_25140 0.28 +0.9
5,546,072 + AO353_25140 0.28 +0.4
5,546,072 + AO353_25140 0.28 +0.7
5,546,072 + AO353_25140 0.28 -1.9
5,546,072 + AO353_25140 0.28 -1.8
5,546,073 - AO353_25140 0.29 -2.2
5,546,073 - AO353_25140 0.29 +0.4
5,546,073 - AO353_25140 0.29 -1.6
5,546,073 - AO353_25140 0.29 -0.8
5,546,073 - AO353_25140 0.29 +2.4
5,546,077 - AO353_25140 0.29 -0.0
5,546,091 - AO353_25140 0.30 +0.8
5,546,257 + AO353_25140 0.47 -1.6
5,546,257 + AO353_25140 0.47 -0.8
5,546,257 + AO353_25140 0.47 -0.8
5,546,257 + AO353_25140 0.47 -1.1
5,546,257 + AO353_25140 0.47 -0.8
5,546,257 + AO353_25140 0.47 -0.6
5,546,258 - +0.1
5,546,258 - AO353_25140 0.47 +2.2
5,546,258 - AO353_25140 0.47 -0.9
5,546,258 - AO353_25140 0.47 -2.7
5,546,258 - AO353_25140 0.47 -0.6
5,546,258 - AO353_25140 0.47 -0.4
5,546,294 + AO353_25140 0.51 -1.4
5,546,294 + AO353_25140 0.51 -2.7
5,546,294 + AO353_25140 0.51 -2.9
5,546,294 + AO353_25140 0.51 -2.8
5,546,295 - AO353_25140 0.51 +0.7
5,546,295 - AO353_25140 0.51 -1.0
5,546,334 + AO353_25140 0.55 -0.6
5,546,434 + AO353_25140 0.65 +0.4
5,546,434 + AO353_25140 0.65 -1.3
5,546,435 - AO353_25140 0.65 -0.3
5,546,435 - AO353_25140 0.65 -0.3
5,546,435 - AO353_25140 0.65 +0.7
5,546,435 - AO353_25140 0.65 -0.2
5,546,500 - AO353_25140 0.72 +0.8
5,546,542 - AO353_25140 0.76 +0.4
5,546,542 - AO353_25140 0.76 -1.5
5,546,622 + AO353_25140 0.84 -0.2
5,546,622 + AO353_25140 0.84 -1.8
5,546,622 + AO353_25140 0.84 -0.6
5,546,622 + AO353_25140 0.84 -0.4
5,546,622 + AO353_25140 0.84 -0.4
5,546,623 - AO353_25140 0.84 -2.1
5,546,623 - AO353_25140 0.84 -0.8
5,546,623 - AO353_25140 0.84 -0.8
5,546,623 - AO353_25140 0.84 -2.1
5,546,623 - AO353_25140 0.84 -1.3
5,546,623 - AO353_25140 0.84 -1.9
5,546,623 - AO353_25140 0.84 -1.5
5,546,623 - AO353_25140 0.84 +3.0
5,546,667 - AO353_25140 0.88 -2.1
5,546,667 - AO353_25140 0.88 -1.2
5,546,667 - AO353_25140 0.88 -1.1
5,546,677 + AO353_25140 0.89 -0.6
5,546,677 + AO353_25140 0.89 -1.3
5,546,680 + AO353_25140 0.90 +2.4
5,546,681 - AO353_25140 0.90 -2.2
5,546,681 - AO353_25140 0.90 +1.3

Or see this region's nucleotide sequence