Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22515

Experiment: Anaerobic, acetate donor; nitrate and iron

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, acetate donor; nitrate and iron
4,936,768	+		AO353_22505	0.24	+1.7
4,936,768	+		AO353_22505	0.24	+1.1
4,936,768	+		AO353_22505	0.24	-2.5
4,936,768	+		AO353_22505	0.24	-0.3
4,936,768	+		AO353_22505	0.24	+1.1
4,936,768	+		AO353_22505	0.24	+0.5
4,936,769	-		AO353_22505	0.24	+0.0
4,936,769	-		AO353_22505	0.24	-0.3
4,936,776	+		AO353_22505	0.26	+0.8
4,936,776	+		AO353_22505	0.26	-1.8
4,936,777	-		AO353_22505	0.26	-0.5
4,936,797	+		AO353_22505	0.32	-1.8
4,936,797	+		AO353_22505	0.32	-0.3
4,936,797	+		AO353_22505	0.32	-2.1
4,936,797	+		AO353_22505	0.32	-1.5
4,936,797	+		AO353_22505	0.32	+1.7
4,936,798	-		AO353_22505	0.32	+1.0
4,936,798	-		AO353_22505	0.32	+0.3
4,936,798	-		AO353_22505	0.32	-1.8
4,936,800	+		AO353_22505	0.33	+0.9
4,936,801	-		AO353_22505	0.33	-0.5
4,936,801	-		AO353_22505	0.33	-0.8
4,936,801	-		AO353_22505	0.33	+0.0
4,936,830	+		AO353_22505	0.41	+2.9
4,936,935	+		AO353_22505	0.71	+0.7
4,936,935	+		AO353_22505	0.71	-1.5
4,937,053	+				-1.5
4,937,054	-				-0.5
4,937,054	-				-0.8
4,937,054	-				-0.3
4,937,054	-				+0.5
4,937,078	-				-0.0
4,937,209	+				+0.7
4,937,209	+				-0.3
4,937,209	+				-1.4
4,937,209	+				-1.1
4,937,254	+				-2.5
4,937,254	+				-1.8
4,937,254	+				-1.3
4,937,254	+				-2.5
4,937,257	+				+1.1
4,937,257	+				+0.7
4,937,427	+				-0.5
4,937,428	-				+1.5
4,937,428	-				+0.0
4,937,500	-		AO353_22510	0.31	-0.8
4,937,598	+		AO353_22510	0.82	-1.3
4,937,598	+		AO353_22510	0.82	+0.3
4,937,599	-		AO353_22510	0.83	-0.3
4,937,599	-		AO353_22510	0.83	-2.4
4,937,599	-		AO353_22510	0.83	-1.8
4,937,610	+		AO353_22510	0.89	+0.9
4,937,610	+		AO353_22510	0.89	+1.3
4,937,610	+		AO353_22510	0.89	+0.5
4,937,611	-		AO353_22510	0.89	-1.3
4,937,646	+				-1.4
4,937,647	-				-0.7
4,937,677	+				+0.6
4,937,701	+				+0.3
4,937,701	+				+2.5
4,937,713	+				-2.3
4,937,758	+				-0.8
4,937,951	-		AO353_22515	0.17	-1.3
4,937,951	-		AO353_22515	0.17	-3.0
4,937,951	-		AO353_22515	0.17	+0.3
4,938,002	-		AO353_22515	0.22	+0.0
4,938,028	+		AO353_22515	0.24	-0.5
4,938,432	-		AO353_22515	0.61	-0.8
4,938,679	+		AO353_22515	0.83	-0.5
4,938,679	+		AO353_22515	0.83	-1.1
4,938,679	+		AO353_22515	0.83	-1.5
4,938,679	+		AO353_22515	0.83	+0.3
4,938,679	+		AO353_22515	0.83	-2.4
4,938,680	-		AO353_22515	0.83	-2.1
4,938,736	+		AO353_22515	0.88	-0.3
4,938,736	+		AO353_22515	0.88	-2.2
4,938,736	+		AO353_22515	0.88	-1.3
4,938,737	-		AO353_22515	0.88	+1.0
4,938,757	+		AO353_22515	0.90	-0.5
4,938,757	+		AO353_22515	0.90	+0.3
4,938,757	+		AO353_22515	0.90	-1.3
4,938,758	-				+0.4
4,938,758	-				-1.0
4,938,758	-				+0.9
4,938,758	-				+2.2
4,938,758	-				-2.1
4,938,766	+				+1.1
4,938,766	+				+0.9
4,938,767	-				-1.7
4,938,767	-				-1.8
4,938,767	-				+1.6
4,938,857	+				-1.8
4,938,903	+				+1.3
4,938,903	+				+0.0
4,938,904	-				+0.0
4,938,904	-				+0.9
4,938,930	+				-1.4
4,938,931	-				-0.3
4,939,008	+				-0.3
4,939,009	-				-1.9
4,939,009	-				+0.3
4,939,109	+		AO353_22520	0.54	+1.0
4,939,110	-		AO353_22520	0.54	-1.5
4,939,110	-		AO353_22520	0.54	-0.1
4,939,110	-		AO353_22520	0.54	-1.0
4,939,110	-		AO353_22520	0.54	-0.7
4,939,207	+				-1.4
4,939,207	+				+0.7
4,939,207	+				-0.7
4,939,208	-				-2.4
4,939,208	-				+0.2
4,939,208	-				-2.4
4,939,208	-				+2.3
4,939,208	-				-1.5
4,939,254	+				+2.8
4,939,280	+				-1.8
4,939,280	+				+0.3
4,939,280	+				-2.1
4,939,281	-				-0.7
4,939,308	+				+0.0
4,939,308	+				-1.0
4,939,308	+				-0.5
4,939,308	+				+0.7
4,939,308	+				+0.2
4,939,309	-				-0.3
4,939,309	-				-0.8
4,939,309	-				-2.0
4,939,312	+				+0.9
4,939,312	+				-1.1
4,939,312	+				-1.6
4,939,312	+				+0.4
4,939,312	+				-1.9
4,939,312	+				-0.3
4,939,312	+				+0.2
4,939,312	+				+0.4
4,939,313	-				-2.0
4,939,313	-				-1.0
4,939,313	-				+1.6
4,939,313	-				-0.3
4,939,313	-				-1.0
4,939,313	-				-1.0
4,939,313	-				+0.0
4,939,313	-				+0.7
4,939,313	-				+2.0
4,939,313	-				+4.2
4,939,313	-				-1.8
4,939,313	-				-1.7
4,939,347	-				-2.1
4,939,368	+				+0.3
4,939,368	+				-0.8
4,939,368	+				-0.8
4,939,369	-				+1.4
4,939,369	-				-1.3
4,939,369	-				+0.7
4,939,380	+				-0.6
4,939,381	-				-1.3
4,939,381	-				-0.8
4,939,391	+				-0.8
4,939,448	+				+1.3
4,939,448	+				-1.4
4,939,448	+				-3.0
4,939,448	+				+1.3
4,939,448	+				-0.2
4,939,449	-				+1.5
4,939,456	+				+0.3
4,939,456	+				-3.0
4,939,456	+				+0.0
4,939,456	+				-0.6
4,939,456	+				+1.9
4,939,505	+				+0.9
4,939,505	+				+1.9
4,939,505	+				+0.5
4,939,505	+				+2.2
4,939,505	+				-1.6
4,939,505	+				+1.1
4,939,506	-				-0.8
4,939,506	-				-2.9
4,939,506	-				-1.3
4,939,506	-				+0.0
4,939,516	+		AO353_22525	0.13	-1.3
4,939,516	+		AO353_22525	0.13	+0.9
4,939,516	+		AO353_22525	0.13	+1.3
4,939,516	+		AO353_22525	0.13	+1.3
4,939,516	+		AO353_22525	0.13	-1.9
4,939,516	+		AO353_22525	0.13	-1.3
4,939,516	+		AO353_22525	0.13	+1.9
4,939,516	+		AO353_22525	0.13	+0.3
4,939,517	-		AO353_22525	0.13	+1.1
4,939,517	-		AO353_22525	0.13	+1.2
4,939,517	-		AO353_22525	0.13	-1.5
4,939,517	-		AO353_22525	0.13	+0.0
4,939,517	-		AO353_22525	0.13	-1.3
4,939,517	-		AO353_22525	0.13	-2.1
4,939,517	-		AO353_22525	0.13	+3.9
4,939,517	-		AO353_22525	0.13	+1.9
4,939,579	+		AO353_22525	0.37	+0.0
4,939,580	-		AO353_22525	0.37	-1.0
4,939,580	-		AO353_22525	0.37	-0.5
4,939,580	-		AO353_22525	0.37	+0.7
4,939,591	+		AO353_22525	0.41	+1.3
4,939,591	+		AO353_22525	0.41	-1.9
4,939,591	+		AO353_22525	0.41	-2.1
4,939,592	-		AO353_22525	0.42	-1.9
4,939,592	-		AO353_22525	0.42	+1.0
4,939,592	-		AO353_22525	0.42	-2.3
4,939,592	-		AO353_22525	0.42	-1.7
4,939,592	-		AO353_22525	0.42	+0.0
4,939,592	-		AO353_22525	0.42	-0.3
4,939,592	-		AO353_22525	0.42	+1.5
4,939,592	-		AO353_22525	0.42	+1.5
4,939,648	+		AO353_22525	0.63	+0.3
4,939,648	+		AO353_22525	0.63	-0.1
4,939,648	+		AO353_22525	0.63	+2.7
4,939,648	+		AO353_22525	0.63	+1.3
4,939,649	-		AO353_22525	0.63	-2.3
4,939,649	-		AO353_22525	0.63	-2.7
4,939,649	-		AO353_22525	0.63	+0.7
4,939,743	+				-2.3
4,939,807	+				-1.8
4,939,807	+				-1.3
4,939,808	-				-0.7
4,939,808	-				-3.2
4,939,825	+				-0.6
4,939,825	+				+0.9
4,939,826	-				-1.0
4,939,826	-				-1.8
4,939,839	-				-1.6
4,939,848	+				-1.0