Experiment: Anaerobic, acetate donor; nitrate and iron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_14990 and AO353_14995 are separated by 251 nucleotides AO353_14995 and AO353_15000 are separated by 33 nucleotides
AO353_14990: AO353_14990 - hypothetical protein, at 3,313,578 to 3,314,162
_14990
AO353_14995: AO353_14995 - 16S rRNA methyltransferase, at 3,314,414 to 3,315,412
_14995
AO353_15000: AO353_15000 - glycerate dehydrogenase, at 3,315,446 to 3,316,411
_15000
Position (kb)
3314
3315
3316 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3313.471 kb on + strand at 3313.471 kb on + strand at 3313.471 kb on + strand at 3313.472 kb on - strand at 3313.472 kb on - strand at 3313.472 kb on - strand at 3313.472 kb on - strand at 3313.472 kb on - strand at 3313.472 kb on - strand at 3313.544 kb on + strand at 3313.544 kb on + strand at 3313.544 kb on + strand at 3313.544 kb on + strand at 3313.544 kb on + strand at 3313.544 kb on + strand at 3313.544 kb on + strand at 3313.544 kb on + strand at 3313.544 kb on + strand at 3313.545 kb on - strand at 3313.545 kb on - strand at 3313.545 kb on - strand at 3313.545 kb on - strand at 3313.545 kb on - strand at 3313.545 kb on - strand at 3313.545 kb on - strand at 3313.545 kb on - strand at 3313.548 kb on + strand at 3313.548 kb on + strand at 3313.548 kb on + strand at 3313.549 kb on - strand at 3313.549 kb on - strand at 3313.549 kb on - strand at 3313.579 kb on + strand at 3313.580 kb on - strand at 3313.609 kb on + strand at 3313.609 kb on + strand at 3313.609 kb on + strand at 3313.609 kb on + strand at 3313.609 kb on + strand at 3313.610 kb on - strand at 3313.610 kb on - strand at 3313.610 kb on - strand at 3313.610 kb on - strand at 3313.610 kb on - strand at 3313.694 kb on + strand, within AO353_14990 at 3313.695 kb on - strand, within AO353_14990 at 3313.739 kb on + strand, within AO353_14990 at 3313.740 kb on - strand, within AO353_14990 at 3313.740 kb on - strand, within AO353_14990 at 3314.174 kb on + strand at 3314.195 kb on + strand at 3314.195 kb on + strand at 3314.195 kb on + strand at 3314.196 kb on - strand at 3314.196 kb on - strand at 3314.204 kb on + strand at 3314.204 kb on + strand at 3314.204 kb on + strand at 3314.204 kb on + strand at 3314.205 kb on - strand at 3314.205 kb on - strand at 3314.205 kb on - strand at 3314.205 kb on - strand at 3314.205 kb on - strand at 3314.240 kb on + strand at 3314.241 kb on - strand at 3314.241 kb on - strand at 3314.241 kb on - strand at 3314.241 kb on - strand at 3314.241 kb on - strand at 3314.241 kb on - strand at 3314.241 kb on - strand at 3314.241 kb on - strand at 3314.241 kb on - strand at 3314.241 kb on - strand at 3314.289 kb on + strand at 3314.289 kb on + strand at 3314.289 kb on + strand at 3314.289 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.312 kb on + strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.313 kb on - strand at 3314.322 kb on + strand at 3314.322 kb on + strand at 3314.322 kb on + strand at 3314.322 kb on + strand at 3314.322 kb on + strand at 3314.322 kb on + strand at 3314.322 kb on + strand at 3314.322 kb on + strand at 3314.322 kb on + strand at 3314.323 kb on - strand at 3314.323 kb on - strand at 3314.323 kb on - strand at 3314.323 kb on - strand at 3314.323 kb on - strand at 3314.323 kb on - strand at 3314.323 kb on - strand at 3314.354 kb on + strand at 3314.354 kb on + strand at 3314.354 kb on + strand at 3314.355 kb on - strand at 3314.355 kb on - strand at 3314.355 kb on - strand at 3314.355 kb on - strand at 3314.355 kb on - strand at 3314.433 kb on + strand at 3314.434 kb on - strand at 3314.502 kb on + strand at 3314.503 kb on - strand at 3314.503 kb on - strand at 3314.503 kb on - strand at 3314.593 kb on - strand, within AO353_14995 at 3314.956 kb on - strand, within AO353_14995 at 3314.956 kb on - strand, within AO353_14995 at 3315.117 kb on + strand, within AO353_14995 at 3315.117 kb on + strand, within AO353_14995 at 3315.117 kb on + strand, within AO353_14995 at 3315.117 kb on + strand, within AO353_14995 at 3315.118 kb on - strand, within AO353_14995 at 3315.118 kb on - strand, within AO353_14995 at 3315.118 kb on - strand, within AO353_14995 at 3315.162 kb on + strand, within AO353_14995 at 3315.162 kb on + strand, within AO353_14995 at 3315.162 kb on + strand, within AO353_14995 at 3315.163 kb on - strand, within AO353_14995 at 3315.163 kb on - strand, within AO353_14995 at 3315.163 kb on - strand, within AO353_14995 at 3315.163 kb on - strand, within AO353_14995 at 3315.163 kb on - strand, within AO353_14995 at 3315.163 kb on - strand, within AO353_14995 at 3315.163 kb on - strand, within AO353_14995 at 3315.392 kb on + strand at 3315.392 kb on + strand at 3315.392 kb on + strand at 3315.393 kb on - strand at 3315.393 kb on - strand at 3315.393 kb on - strand at 3315.412 kb on + strand at 3315.412 kb on + strand at 3315.412 kb on + strand at 3315.413 kb on - strand at 3315.444 kb on + strand at 3315.444 kb on + strand at 3315.763 kb on + strand, within AO353_15000 at 3315.769 kb on + strand, within AO353_15000 at 3315.769 kb on + strand, within AO353_15000 at 3315.770 kb on - strand, within AO353_15000 at 3315.770 kb on - strand, within AO353_15000 at 3315.770 kb on - strand, within AO353_15000 at 3316.039 kb on - strand, within AO353_15000 at 3316.243 kb on + strand, within AO353_15000 at 3316.243 kb on + strand, within AO353_15000 at 3316.243 kb on + strand, within AO353_15000 at 3316.244 kb on - strand, within AO353_15000 at 3316.388 kb on + strand at 3316.412 kb on + strand at 3316.412 kb on + strand at 3316.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate and iron remove 3,313,471 + -1.6 3,313,471 + -0.7 3,313,471 + -1.8 3,313,472 - +1.3 3,313,472 - -0.7 3,313,472 - -1.1 3,313,472 - -0.9 3,313,472 - -0.7 3,313,472 - +1.1 3,313,544 + +0.4 3,313,544 + -0.6 3,313,544 + -2.7 3,313,544 + -1.1 3,313,544 + -0.3 3,313,544 + +1.1 3,313,544 + -0.3 3,313,544 + -1.1 3,313,544 + -1.3 3,313,545 - +0.7 3,313,545 - -1.7 3,313,545 - -0.6 3,313,545 - +1.0 3,313,545 - -0.4 3,313,545 - -0.1 3,313,545 - +0.1 3,313,545 - +2.5 3,313,548 + -2.4 3,313,548 + -2.1 3,313,548 + -0.2 3,313,549 - -2.0 3,313,549 - -0.9 3,313,549 - -1.9 3,313,579 + +1.1 3,313,580 - +0.9 3,313,609 + +1.5 3,313,609 + +1.4 3,313,609 + +0.8 3,313,609 + +0.7 3,313,609 + -0.5 3,313,610 - +1.3 3,313,610 - -0.2 3,313,610 - -0.9 3,313,610 - +0.3 3,313,610 - -2.4 3,313,694 + AO353_14990 0.20 -0.3 3,313,695 - AO353_14990 0.20 +0.2 3,313,739 + AO353_14990 0.28 +1.4 3,313,740 - AO353_14990 0.28 +0.7 3,313,740 - AO353_14990 0.28 -0.3 3,314,174 + -0.1 3,314,195 + -1.3 3,314,195 + -0.3 3,314,195 + -0.1 3,314,196 - -0.6 3,314,196 - +0.7 3,314,204 + -1.9 3,314,204 + +1.4 3,314,204 + -2.4 3,314,204 + +1.1 3,314,205 - +0.4 3,314,205 - +2.0 3,314,205 - -0.6 3,314,205 - -2.1 3,314,205 - -0.3 3,314,240 + -0.9 3,314,241 - -1.7 3,314,241 - -2.0 3,314,241 - -0.3 3,314,241 - +2.3 3,314,241 - +1.3 3,314,241 - -1.7 3,314,241 - +0.7 3,314,241 - +0.4 3,314,241 - +0.5 3,314,241 - -0.1 3,314,289 + -2.8 3,314,289 + +1.6 3,314,289 + -0.4 3,314,289 + +1.5 3,314,312 + -2.6 3,314,312 + -0.7 3,314,312 + -0.6 3,314,312 + +0.7 3,314,312 + -2.1 3,314,312 + +0.4 3,314,312 + -2.0 3,314,312 + -0.9 3,314,312 + -0.9 3,314,312 + +0.3 3,314,312 + +1.3 3,314,312 + +1.3 3,314,312 + +1.5 3,314,312 + -2.1 3,314,312 + -1.1 3,314,312 + -2.0 3,314,313 - -2.7 3,314,313 - -2.8 3,314,313 - -2.0 3,314,313 - -2.4 3,314,313 - +1.1 3,314,313 - -0.3 3,314,313 - -1.2 3,314,313 - -3.0 3,314,313 - +2.1 3,314,313 - +0.4 3,314,313 - +2.3 3,314,313 - +0.4 3,314,313 - -3.7 3,314,313 - -1.3 3,314,313 - -0.6 3,314,322 + -1.4 3,314,322 + -1.8 3,314,322 + +0.7 3,314,322 + -1.2 3,314,322 + -2.7 3,314,322 + +0.6 3,314,322 + +1.0 3,314,322 + +0.9 3,314,322 + +2.3 3,314,323 - -1.1 3,314,323 - +0.4 3,314,323 - -0.1 3,314,323 - -1.3 3,314,323 - -2.5 3,314,323 - +0.9 3,314,323 - +1.5 3,314,354 + -0.6 3,314,354 + -2.0 3,314,354 + -2.3 3,314,355 - +1.0 3,314,355 - +1.3 3,314,355 - -1.7 3,314,355 - -1.1 3,314,355 - +2.1 3,314,433 + +0.3 3,314,434 - -0.7 3,314,502 + -1.7 3,314,503 - +0.7 3,314,503 - -0.7 3,314,503 - -0.4 3,314,593 - AO353_14995 0.18 -1.7 3,314,956 - AO353_14995 0.54 +1.1 3,314,956 - AO353_14995 0.54 +0.7 3,315,117 + AO353_14995 0.70 +1.8 3,315,117 + AO353_14995 0.70 -0.9 3,315,117 + AO353_14995 0.70 -1.3 3,315,117 + AO353_14995 0.70 -1.4 3,315,118 - AO353_14995 0.70 +2.4 3,315,118 - AO353_14995 0.70 -0.9 3,315,118 - AO353_14995 0.70 -0.9 3,315,162 + AO353_14995 0.75 -0.3 3,315,162 + AO353_14995 0.75 -0.7 3,315,162 + AO353_14995 0.75 -0.8 3,315,163 - AO353_14995 0.75 +0.3 3,315,163 - AO353_14995 0.75 -1.3 3,315,163 - AO353_14995 0.75 -1.4 3,315,163 - AO353_14995 0.75 +0.3 3,315,163 - AO353_14995 0.75 -2.8 3,315,163 - AO353_14995 0.75 -0.7 3,315,163 - AO353_14995 0.75 -0.3 3,315,392 + -1.1 3,315,392 + -1.3 3,315,392 + +1.4 3,315,393 - -0.7 3,315,393 - -0.1 3,315,393 - -1.7 3,315,412 + -1.1 3,315,412 + +0.7 3,315,412 + +2.3 3,315,413 - -0.1 3,315,444 + +0.7 3,315,444 + +1.0 3,315,763 + AO353_15000 0.33 -0.8 3,315,769 + AO353_15000 0.33 -1.4 3,315,769 + AO353_15000 0.33 -0.6 3,315,770 - AO353_15000 0.34 -1.1 3,315,770 - AO353_15000 0.34 -1.1 3,315,770 - AO353_15000 0.34 -1.9 3,316,039 - AO353_15000 0.61 +0.3 3,316,243 + AO353_15000 0.83 +2.3 3,316,243 + AO353_15000 0.83 -1.8 3,316,243 + AO353_15000 0.83 -0.6 3,316,244 - AO353_15000 0.83 -2.1 3,316,388 + -1.3 3,316,412 + +2.6 3,316,412 + +0.8 3,316,412 + -0.7
Or see this region's nucleotide sequence