Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04235

Experiment: Anaerobic, acetate donor; nitrate and iron

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04225 and AO353_04230 overlap by 4 nucleotidesAO353_04230 and AO353_04235 overlap by 4 nucleotidesAO353_04235 and AO353_04240 overlap by 4 nucleotidesAO353_04240 and AO353_04245 overlap by 1 nucleotides AO353_04225: AO353_04225 - chemotaxis protein CheA, at 906,995 to 909,289 _04225 AO353_04230: AO353_04230 - chemotaxis protein CheW, at 909,286 to 909,969 _04230 AO353_04235: AO353_04235 - chemotaxis protein CheR, at 909,966 to 911,243 _04235 AO353_04240: AO353_04240 - chemotaxis protein CheW, at 911,240 to 911,776 _04240 AO353_04245: AO353_04245 - chemotaxis protein, at 911,776 to 913,398 _04245 Position (kb) 909 910 911 912Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 909.377 kb on + strand, within AO353_04230at 909.377 kb on + strand, within AO353_04230at 909.377 kb on + strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.378 kb on - strand, within AO353_04230at 909.798 kb on - strand, within AO353_04230at 909.830 kb on + strand, within AO353_04230at 909.975 kb on - strandat 909.975 kb on - strandat 909.975 kb on - strandat 910.001 kb on + strandat 910.001 kb on + strandat 910.002 kb on - strandat 910.060 kb on - strandat 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.105 kb on + strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.106 kb on - strand, within AO353_04235at 910.177 kb on + strand, within AO353_04235at 910.177 kb on + strand, within AO353_04235at 910.178 kb on - strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.213 kb on + strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.214 kb on - strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.247 kb on + strand, within AO353_04235at 910.248 kb on - strand, within AO353_04235at 910.418 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.551 kb on + strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.552 kb on - strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.553 kb on + strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.554 kb on - strand, within AO353_04235at 910.609 kb on + strand, within AO353_04235at 910.609 kb on + strand, within AO353_04235at 910.609 kb on + strand, within AO353_04235at 910.610 kb on - strand, within AO353_04235at 910.610 kb on - strand, within AO353_04235at 910.610 kb on - strand, within AO353_04235at 910.642 kb on + strand, within AO353_04235at 910.642 kb on + strand, within AO353_04235at 910.643 kb on - strand, within AO353_04235at 910.753 kb on + strand, within AO353_04235at 910.754 kb on - strand, within AO353_04235at 910.754 kb on - strand, within AO353_04235at 910.802 kb on - strand, within AO353_04235at 910.910 kb on - strand, within AO353_04235at 910.910 kb on - strand, within AO353_04235at 910.962 kb on - strand, within AO353_04235at 911.107 kb on + strand, within AO353_04235at 911.107 kb on + strand, within AO353_04235at 911.243 kb on + strandat 911.243 kb on + strandat 911.243 kb on + strandat 911.244 kb on - strandat 911.244 kb on - strandat 911.376 kb on + strand, within AO353_04240at 911.499 kb on + strand, within AO353_04240at 911.499 kb on + strand, within AO353_04240at 911.500 kb on - strand, within AO353_04240at 911.784 kb on + strandat 911.929 kb on - strandat 912.128 kb on + strand, within AO353_04245at 912.128 kb on + strand, within AO353_04245at 912.128 kb on + strand, within AO353_04245at 912.128 kb on + strand, within AO353_04245at 912.128 kb on + strand, within AO353_04245at 912.128 kb on + strand, within AO353_04245at 912.129 kb on - strand, within AO353_04245at 912.129 kb on - strand, within AO353_04245at 912.129 kb on - strand, within AO353_04245at 912.129 kb on - strand, within AO353_04245at 912.197 kb on + strand, within AO353_04245at 912.198 kb on - strand, within AO353_04245

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate and iron
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909,377 + AO353_04230 0.13 -1.3
909,377 + AO353_04230 0.13 -1.2
909,377 + AO353_04230 0.13 -1.0
909,378 - AO353_04230 0.13 -1.7
909,378 - AO353_04230 0.13 +3.8
909,378 - AO353_04230 0.13 +1.2
909,378 - AO353_04230 0.13 -1.8
909,378 - AO353_04230 0.13 +0.0
909,378 - AO353_04230 0.13 +5.0
909,378 - AO353_04230 0.13 -0.7
909,798 - AO353_04230 0.75 -2.0
909,830 + AO353_04230 0.80 +0.5
909,975 - -0.6
909,975 - -0.6
909,975 - +3.3
910,001 + -0.8
910,001 + -0.8
910,002 - +1.4
910,060 - +1.0
910,105 + AO353_04235 0.11 -1.0
910,105 + AO353_04235 0.11 +1.5
910,105 + AO353_04235 0.11 -0.4
910,105 + AO353_04235 0.11 +1.5
910,106 - AO353_04235 0.11 -2.0
910,106 - AO353_04235 0.11 +1.0
910,106 - AO353_04235 0.11 -2.2
910,106 - AO353_04235 0.11 +1.5
910,177 + AO353_04235 0.17 +2.8
910,177 + AO353_04235 0.17 -0.8
910,178 - AO353_04235 0.17 +0.3
910,213 + AO353_04235 0.19 +0.4
910,213 + AO353_04235 0.19 -1.6
910,213 + AO353_04235 0.19 -1.0
910,213 + AO353_04235 0.19 -1.2
910,213 + AO353_04235 0.19 +2.4
910,214 - AO353_04235 0.19 -1.1
910,214 - AO353_04235 0.19 +1.4
910,214 - AO353_04235 0.19 +1.1
910,247 + AO353_04235 0.22 +0.9
910,247 + AO353_04235 0.22 +0.9
910,247 + AO353_04235 0.22 -2.3
910,247 + AO353_04235 0.22 +2.7
910,247 + AO353_04235 0.22 -0.8
910,248 - AO353_04235 0.22 +0.8
910,418 + AO353_04235 0.35 -1.0
910,551 + AO353_04235 0.46 -1.0
910,551 + AO353_04235 0.46 -1.4
910,551 + AO353_04235 0.46 -1.5
910,551 + AO353_04235 0.46 +2.0
910,551 + AO353_04235 0.46 -1.3
910,551 + AO353_04235 0.46 +0.5
910,551 + AO353_04235 0.46 +1.1
910,551 + AO353_04235 0.46 -0.6
910,551 + AO353_04235 0.46 -1.5
910,551 + AO353_04235 0.46 -1.7
910,551 + AO353_04235 0.46 -1.9
910,551 + AO353_04235 0.46 +0.7
910,551 + AO353_04235 0.46 +1.0
910,551 + AO353_04235 0.46 -0.4
910,551 + AO353_04235 0.46 +2.6
910,551 + AO353_04235 0.46 +0.4
910,551 + AO353_04235 0.46 -0.8
910,551 + AO353_04235 0.46 +0.0
910,551 + AO353_04235 0.46 -0.2
910,551 + AO353_04235 0.46 +2.1
910,552 - AO353_04235 0.46 -0.4
910,552 - AO353_04235 0.46 -1.6
910,552 - AO353_04235 0.46 +0.6
910,552 - AO353_04235 0.46 +0.4
910,553 + AO353_04235 0.46 -1.2
910,553 + AO353_04235 0.46 -2.3
910,553 + AO353_04235 0.46 +1.4
910,553 + AO353_04235 0.46 +0.7
910,554 - AO353_04235 0.46 -3.0
910,554 - AO353_04235 0.46 -0.2
910,554 - AO353_04235 0.46 +0.9
910,554 - AO353_04235 0.46 +1.3
910,554 - AO353_04235 0.46 -0.0
910,554 - AO353_04235 0.46 -2.1
910,554 - AO353_04235 0.46 +5.2
910,554 - AO353_04235 0.46 +0.4
910,554 - AO353_04235 0.46 -0.2
910,609 + AO353_04235 0.50 +0.5
910,609 + AO353_04235 0.50 +1.2
910,609 + AO353_04235 0.50 -3.0
910,610 - AO353_04235 0.50 -1.2
910,610 - AO353_04235 0.50 +1.6
910,610 - AO353_04235 0.50 -0.2
910,642 + AO353_04235 0.53 -1.2
910,642 + AO353_04235 0.53 +1.4
910,643 - AO353_04235 0.53 +0.7
910,753 + AO353_04235 0.62 +2.6
910,754 - AO353_04235 0.62 +1.9
910,754 - AO353_04235 0.62 +1.7
910,802 - AO353_04235 0.65 +0.6
910,910 - AO353_04235 0.74 +2.8
910,910 - AO353_04235 0.74 -1.1
910,962 - AO353_04235 0.78 -3.1
911,107 + AO353_04235 0.89 -1.4
911,107 + AO353_04235 0.89 -1.6
911,243 + +1.6
911,243 + +0.4
911,243 + -1.2
911,244 - +1.5
911,244 - +0.4
911,376 + AO353_04240 0.25 +0.4
911,499 + AO353_04240 0.48 -1.5
911,499 + AO353_04240 0.48 -0.0
911,500 - AO353_04240 0.48 -2.5
911,784 + +1.3
911,929 - +2.4
912,128 + AO353_04245 0.22 -2.0
912,128 + AO353_04245 0.22 -2.3
912,128 + AO353_04245 0.22 +1.7
912,128 + AO353_04245 0.22 -1.1
912,128 + AO353_04245 0.22 -0.2
912,128 + AO353_04245 0.22 -1.3
912,129 - AO353_04245 0.22 +2.4
912,129 - AO353_04245 0.22 +2.0
912,129 - AO353_04245 0.22 -0.3
912,129 - AO353_04245 0.22 -1.7
912,197 + AO353_04245 0.26 -0.0
912,198 - AO353_04245 0.26 +0.8

Or see this region's nucleotide sequence