Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01705

Experiment: Anaerobic, acetate donor; nitrate and iron

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01695 and AO353_01700 are separated by 23 nucleotidesAO353_01700 and AO353_01705 are separated by 50 nucleotidesAO353_01705 and AO353_01710 overlap by 4 nucleotides AO353_01695: AO353_01695 - hypothetical protein, at 356,420 to 357,226 _01695 AO353_01700: AO353_01700 - glutathione S-transferase, at 357,250 to 357,909 _01700 AO353_01705: AO353_01705 - alpha/beta hydrolase, at 357,960 to 358,811 _01705 AO353_01710: AO353_01710 - alpha/beta hydrolase, at 358,808 to 359,614 _01710 Position (kb) 357 358 359Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 356.988 kb on + strand, within AO353_01695at 356.988 kb on + strand, within AO353_01695at 356.988 kb on + strand, within AO353_01695at 356.989 kb on - strand, within AO353_01695at 356.989 kb on - strand, within AO353_01695at 356.989 kb on - strand, within AO353_01695at 357.075 kb on + strand, within AO353_01695at 357.075 kb on + strand, within AO353_01695at 357.076 kb on - strand, within AO353_01695at 357.076 kb on - strand, within AO353_01695at 357.076 kb on - strand, within AO353_01695at 357.076 kb on - strand, within AO353_01695at 357.076 kb on - strand, within AO353_01695at 357.164 kb on + strandat 357.165 kb on - strandat 357.245 kb on + strandat 357.245 kb on + strandat 357.245 kb on + strandat 357.245 kb on + strandat 357.245 kb on + strandat 357.246 kb on - strandat 357.246 kb on - strandat 357.246 kb on - strandat 357.246 kb on - strandat 357.246 kb on - strandat 357.246 kb on - strandat 357.300 kb on + strandat 357.301 kb on - strandat 357.425 kb on + strand, within AO353_01700at 357.425 kb on + strand, within AO353_01700at 357.449 kb on + strand, within AO353_01700at 357.449 kb on + strand, within AO353_01700at 357.450 kb on - strand, within AO353_01700at 357.450 kb on - strand, within AO353_01700at 357.450 kb on - strand, within AO353_01700at 357.450 kb on - strand, within AO353_01700at 357.450 kb on - strand, within AO353_01700at 357.464 kb on + strand, within AO353_01700at 357.465 kb on - strand, within AO353_01700at 357.500 kb on + strand, within AO353_01700at 357.500 kb on + strand, within AO353_01700at 357.500 kb on + strand, within AO353_01700at 357.500 kb on + strand, within AO353_01700at 357.500 kb on + strand, within AO353_01700at 357.501 kb on - strand, within AO353_01700at 357.501 kb on - strand, within AO353_01700at 357.501 kb on - strand, within AO353_01700at 357.501 kb on - strand, within AO353_01700at 357.524 kb on + strand, within AO353_01700at 357.560 kb on + strand, within AO353_01700at 357.689 kb on + strand, within AO353_01700at 357.689 kb on + strand, within AO353_01700at 357.689 kb on + strand, within AO353_01700at 357.689 kb on + strand, within AO353_01700at 357.690 kb on - strand, within AO353_01700at 357.690 kb on - strand, within AO353_01700at 357.690 kb on - strand, within AO353_01700at 357.690 kb on - strand, within AO353_01700at 357.690 kb on - strand, within AO353_01700at 357.690 kb on - strand, within AO353_01700at 357.690 kb on - strand, within AO353_01700at 357.690 kb on - strand, within AO353_01700at 357.690 kb on - strand, within AO353_01700at 357.690 kb on - strand, within AO353_01700at 357.831 kb on + strand, within AO353_01700at 357.831 kb on + strand, within AO353_01700at 357.832 kb on - strand, within AO353_01700at 357.832 kb on - strand, within AO353_01700at 357.832 kb on - strand, within AO353_01700at 357.833 kb on + strand, within AO353_01700at 357.833 kb on + strand, within AO353_01700at 357.834 kb on - strand, within AO353_01700at 357.834 kb on - strand, within AO353_01700at 357.862 kb on - strandat 357.896 kb on + strandat 357.896 kb on + strandat 357.896 kb on + strandat 357.897 kb on - strandat 357.897 kb on - strandat 357.897 kb on - strandat 357.897 kb on - strandat 357.904 kb on + strandat 357.904 kb on + strandat 357.904 kb on + strandat 357.904 kb on + strandat 357.904 kb on + strandat 357.904 kb on + strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 357.905 kb on - strandat 358.062 kb on - strand, within AO353_01705at 358.226 kb on - strand, within AO353_01705at 358.264 kb on - strand, within AO353_01705at 358.264 kb on - strand, within AO353_01705at 358.305 kb on - strand, within AO353_01705at 358.336 kb on + strand, within AO353_01705at 358.337 kb on - strand, within AO353_01705at 358.337 kb on - strand, within AO353_01705at 358.577 kb on - strand, within AO353_01705at 358.939 kb on + strand, within AO353_01710at 359.010 kb on - strand, within AO353_01710at 359.010 kb on - strand, within AO353_01710at 359.058 kb on + strand, within AO353_01710at 359.058 kb on + strand, within AO353_01710at 359.058 kb on + strand, within AO353_01710at 359.058 kb on + strand, within AO353_01710at 359.058 kb on + strand, within AO353_01710at 359.059 kb on - strand, within AO353_01710at 359.059 kb on - strand, within AO353_01710at 359.059 kb on - strand, within AO353_01710at 359.059 kb on - strand, within AO353_01710at 359.059 kb on - strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.133 kb on + strand, within AO353_01710at 359.134 kb on - strand, within AO353_01710at 359.134 kb on - strand, within AO353_01710at 359.134 kb on - strand, within AO353_01710at 359.187 kb on + strand, within AO353_01710at 359.187 kb on + strand, within AO353_01710at 359.187 kb on + strand, within AO353_01710at 359.187 kb on + strand, within AO353_01710at 359.188 kb on - strand, within AO353_01710at 359.188 kb on - strand, within AO353_01710at 359.347 kb on - strand, within AO353_01710at 359.530 kb on - strand, within AO353_01710at 359.530 kb on - strand, within AO353_01710at 359.562 kb on + strandat 359.563 kb on - strandat 359.563 kb on - strandat 359.614 kb on + strandat 359.615 kb on - strandat 359.655 kb on + strandat 359.656 kb on - strandat 359.682 kb on + strandat 359.683 kb on - strandat 359.683 kb on - strandat 359.683 kb on - strandat 359.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate and iron
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356,988 + AO353_01695 0.70 -1.2
356,988 + AO353_01695 0.70 +1.4
356,988 + AO353_01695 0.70 -1.0
356,989 - AO353_01695 0.71 +0.3
356,989 - AO353_01695 0.71 -3.3
356,989 - AO353_01695 0.71 +0.8
357,075 + AO353_01695 0.81 -0.4
357,075 + AO353_01695 0.81 +1.2
357,076 - AO353_01695 0.81 -1.6
357,076 - AO353_01695 0.81 -1.3
357,076 - AO353_01695 0.81 -2.1
357,076 - AO353_01695 0.81 -1.8
357,076 - AO353_01695 0.81 -0.8
357,164 + -0.2
357,165 - -0.5
357,245 + -1.6
357,245 + -0.5
357,245 + +1.2
357,245 + -0.8
357,245 + -0.5
357,246 - -0.8
357,246 - +0.8
357,246 - -0.6
357,246 - -2.2
357,246 - -0.8
357,246 - -1.5
357,300 + -0.5
357,301 - +0.0
357,425 + AO353_01700 0.27 -1.5
357,425 + AO353_01700 0.27 +0.4
357,449 + AO353_01700 0.30 -1.5
357,449 + AO353_01700 0.30 -2.0
357,450 - AO353_01700 0.30 +0.0
357,450 - AO353_01700 0.30 -0.3
357,450 - AO353_01700 0.30 -0.4
357,450 - AO353_01700 0.30 -0.2
357,450 - AO353_01700 0.30 +0.7
357,464 + AO353_01700 0.32 -1.1
357,465 - AO353_01700 0.33 -1.7
357,500 + AO353_01700 0.38 -1.3
357,500 + AO353_01700 0.38 -0.8
357,500 + AO353_01700 0.38 +2.4
357,500 + AO353_01700 0.38 +0.9
357,500 + AO353_01700 0.38 +0.7
357,501 - AO353_01700 0.38 +0.5
357,501 - AO353_01700 0.38 +0.6
357,501 - AO353_01700 0.38 -0.6
357,501 - AO353_01700 0.38 +1.6
357,524 + AO353_01700 0.42 +1.4
357,560 + AO353_01700 0.47 -0.2
357,689 + AO353_01700 0.67 +2.9
357,689 + AO353_01700 0.67 +3.4
357,689 + AO353_01700 0.67 -1.6
357,689 + AO353_01700 0.67 +2.7
357,690 - AO353_01700 0.67 -0.6
357,690 - AO353_01700 0.67 -1.6
357,690 - AO353_01700 0.67 -1.5
357,690 - AO353_01700 0.67 -0.6
357,690 - AO353_01700 0.67 -2.5
357,690 - AO353_01700 0.67 -0.6
357,690 - AO353_01700 0.67 -2.5
357,690 - AO353_01700 0.67 -1.2
357,690 - AO353_01700 0.67 +0.9
357,690 - AO353_01700 0.67 +0.8
357,831 + AO353_01700 0.88 +0.0
357,831 + AO353_01700 0.88 +1.0
357,832 - AO353_01700 0.88 +1.3
357,832 - AO353_01700 0.88 -1.8
357,832 - AO353_01700 0.88 +0.9
357,833 + AO353_01700 0.88 -2.5
357,833 + AO353_01700 0.88 -1.3
357,834 - AO353_01700 0.88 -1.5
357,834 - AO353_01700 0.88 -1.6
357,862 - -1.3
357,896 + +0.7
357,896 + +0.4
357,896 + -0.1
357,897 - +1.2
357,897 - +1.4
357,897 - -2.3
357,897 - +1.0
357,904 + -1.1
357,904 + -0.6
357,904 + -1.0
357,904 + -1.5
357,904 + +0.7
357,904 + +1.9
357,905 - -0.1
357,905 - +1.4
357,905 - -1.3
357,905 - +1.7
357,905 - +0.5
357,905 - -1.1
357,905 - +0.2
357,905 - -0.0
357,905 - +1.3
357,905 - -0.8
358,062 - AO353_01705 0.12 -1.8
358,226 - AO353_01705 0.31 -1.9
358,264 - AO353_01705 0.36 -0.5
358,264 - AO353_01705 0.36 +0.1
358,305 - AO353_01705 0.40 -3.6
358,336 + AO353_01705 0.44 +1.5
358,337 - AO353_01705 0.44 -1.8
358,337 - AO353_01705 0.44 -1.8
358,577 - AO353_01705 0.72 +0.4
358,939 + AO353_01710 0.16 -1.7
359,010 - AO353_01710 0.25 -1.0
359,010 - AO353_01710 0.25 +2.3
359,058 + AO353_01710 0.31 -0.7
359,058 + AO353_01710 0.31 -0.7
359,058 + AO353_01710 0.31 -0.2
359,058 + AO353_01710 0.31 +2.0
359,058 + AO353_01710 0.31 -0.8
359,059 - AO353_01710 0.31 +0.6
359,059 - AO353_01710 0.31 -0.9
359,059 - AO353_01710 0.31 -0.8
359,059 - AO353_01710 0.31 -2.9
359,059 - AO353_01710 0.31 -0.2
359,133 + AO353_01710 0.40 +1.8
359,133 + AO353_01710 0.40 +1.8
359,133 + AO353_01710 0.40 -1.1
359,133 + AO353_01710 0.40 +0.6
359,133 + AO353_01710 0.40 -0.7
359,133 + AO353_01710 0.40 +0.4
359,133 + AO353_01710 0.40 -1.2
359,134 - AO353_01710 0.40 -1.5
359,134 - AO353_01710 0.40 +0.8
359,134 - AO353_01710 0.40 -1.7
359,187 + AO353_01710 0.47 +0.4
359,187 + AO353_01710 0.47 -0.7
359,187 + AO353_01710 0.47 -1.5
359,187 + AO353_01710 0.47 +1.2
359,188 - AO353_01710 0.47 -0.6
359,188 - AO353_01710 0.47 -1.9
359,347 - AO353_01710 0.67 -1.0
359,530 - AO353_01710 0.89 +1.2
359,530 - AO353_01710 0.89 +0.0
359,562 + +1.9
359,563 - -1.2
359,563 - +2.3
359,614 + -0.7
359,615 - +1.6
359,655 + +1.9
359,656 - -0.2
359,682 + -1.0
359,683 - -2.8
359,683 - -0.2
359,683 - -1.0
359,717 - -2.9

Or see this region's nucleotide sequence