Experiment: Anaerobic, acetate donor; nitrate and iron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00735 and AO353_00740 are separated by 141 nucleotides AO353_00740 and AO353_00745 are separated by 24 nucleotides
AO353_00735: AO353_00735 - xanthine dehydrogenase, at 160,306 to 162,705
_00735
AO353_00740: AO353_00740 - molybdenum cofactor sulfurylase, at 162,847 to 163,689
_00740
AO353_00745: AO353_00745 - guanine deaminase, at 163,714 to 165,018
_00745
Position (kb) 162
163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 161.995 kb on + strand, within AO353_00735 at 161.995 kb on + strand, within AO353_00735 at 161.995 kb on + strand, within AO353_00735 at 161.995 kb on + strand, within AO353_00735 at 161.995 kb on + strand, within AO353_00735 at 161.996 kb on - strand, within AO353_00735 at 161.996 kb on - strand, within AO353_00735 at 161.996 kb on - strand, within AO353_00735 at 161.996 kb on - strand, within AO353_00735 at 162.018 kb on - strand, within AO353_00735 at 162.018 kb on - strand, within AO353_00735 at 162.088 kb on + strand, within AO353_00735 at 162.088 kb on + strand, within AO353_00735 at 162.088 kb on + strand, within AO353_00735 at 162.089 kb on - strand, within AO353_00735 at 162.089 kb on - strand, within AO353_00735 at 162.124 kb on + strand, within AO353_00735 at 162.124 kb on + strand, within AO353_00735 at 162.125 kb on - strand, within AO353_00735 at 162.125 kb on - strand, within AO353_00735 at 162.125 kb on - strand, within AO353_00735 at 162.125 kb on - strand, within AO353_00735 at 162.125 kb on - strand, within AO353_00735 at 162.142 kb on + strand, within AO353_00735 at 162.142 kb on + strand, within AO353_00735 at 162.142 kb on + strand, within AO353_00735 at 162.142 kb on + strand, within AO353_00735 at 162.143 kb on - strand, within AO353_00735 at 162.145 kb on + strand, within AO353_00735 at 162.145 kb on + strand, within AO353_00735 at 162.145 kb on + strand, within AO353_00735 at 162.145 kb on + strand, within AO353_00735 at 162.145 kb on + strand, within AO353_00735 at 162.145 kb on + strand, within AO353_00735 at 162.145 kb on + strand, within AO353_00735 at 162.145 kb on + strand, within AO353_00735 at 162.146 kb on - strand, within AO353_00735 at 162.146 kb on - strand, within AO353_00735 at 162.146 kb on - strand, within AO353_00735 at 162.146 kb on - strand, within AO353_00735 at 162.146 kb on - strand, within AO353_00735 at 162.146 kb on - strand, within AO353_00735 at 162.146 kb on - strand, within AO353_00735 at 162.146 kb on - strand, within AO353_00735 at 162.178 kb on + strand, within AO353_00735 at 162.178 kb on + strand, within AO353_00735 at 162.178 kb on + strand, within AO353_00735 at 162.178 kb on + strand, within AO353_00735 at 162.178 kb on + strand, within AO353_00735 at 162.178 kb on + strand, within AO353_00735 at 162.178 kb on + strand, within AO353_00735 at 162.179 kb on - strand, within AO353_00735 at 162.179 kb on - strand, within AO353_00735 at 162.179 kb on - strand, within AO353_00735 at 162.179 kb on - strand, within AO353_00735 at 162.179 kb on - strand, within AO353_00735 at 162.179 kb on - strand, within AO353_00735 at 162.179 kb on - strand, within AO353_00735 at 162.181 kb on + strand, within AO353_00735 at 162.181 kb on + strand, within AO353_00735 at 162.181 kb on + strand, within AO353_00735 at 162.182 kb on - strand, within AO353_00735 at 162.182 kb on - strand, within AO353_00735 at 162.182 kb on - strand, within AO353_00735 at 162.182 kb on - strand, within AO353_00735 at 162.184 kb on + strand, within AO353_00735 at 162.184 kb on + strand, within AO353_00735 at 162.184 kb on + strand, within AO353_00735 at 162.238 kb on + strand, within AO353_00735 at 162.239 kb on - strand, within AO353_00735 at 162.406 kb on + strand, within AO353_00735 at 162.406 kb on + strand, within AO353_00735 at 162.407 kb on - strand, within AO353_00735 at 162.407 kb on - strand, within AO353_00735 at 162.407 kb on - strand, within AO353_00735 at 162.407 kb on - strand, within AO353_00735 at 162.703 kb on + strand at 162.742 kb on + strand at 162.742 kb on + strand at 162.742 kb on + strand at 162.742 kb on + strand at 162.742 kb on + strand at 162.743 kb on - strand at 162.788 kb on + strand at 162.788 kb on + strand at 162.850 kb on + strand at 162.850 kb on + strand at 162.850 kb on + strand at 162.850 kb on + strand at 162.850 kb on + strand at 162.850 kb on + strand at 162.850 kb on + strand at 162.850 kb on + strand at 162.850 kb on + strand at 162.851 kb on - strand at 162.851 kb on - strand at 162.851 kb on - strand at 162.851 kb on - strand at 162.851 kb on - strand at 162.851 kb on - strand at 162.851 kb on - strand at 162.851 kb on - strand at 162.851 kb on - strand at 162.851 kb on - strand at 162.851 kb on - strand at 162.851 kb on - strand at 163.012 kb on + strand, within AO353_00740 at 163.012 kb on + strand, within AO353_00740 at 163.012 kb on + strand, within AO353_00740 at 163.012 kb on + strand, within AO353_00740 at 163.012 kb on + strand, within AO353_00740 at 163.013 kb on - strand, within AO353_00740 at 163.151 kb on + strand, within AO353_00740 at 163.151 kb on + strand, within AO353_00740 at 163.152 kb on - strand, within AO353_00740 at 163.169 kb on + strand, within AO353_00740 at 163.290 kb on + strand, within AO353_00740 at 163.291 kb on - strand, within AO353_00740 at 163.346 kb on - strand, within AO353_00740 at 163.423 kb on + strand, within AO353_00740 at 163.423 kb on + strand, within AO353_00740 at 163.423 kb on + strand, within AO353_00740 at 163.424 kb on - strand, within AO353_00740 at 163.424 kb on - strand, within AO353_00740 at 163.600 kb on + strand, within AO353_00740 at 163.600 kb on + strand, within AO353_00740 at 163.600 kb on + strand, within AO353_00740 at 163.600 kb on + strand, within AO353_00740 at 163.600 kb on + strand, within AO353_00740 at 163.600 kb on + strand, within AO353_00740 at 163.600 kb on + strand, within AO353_00740 at 163.600 kb on + strand, within AO353_00740 at 163.600 kb on + strand, within AO353_00740 at 163.600 kb on + strand, within AO353_00740 at 163.601 kb on - strand, within AO353_00740 at 163.601 kb on - strand, within AO353_00740 at 163.601 kb on - strand, within AO353_00740 at 163.601 kb on - strand, within AO353_00740 at 163.601 kb on - strand, within AO353_00740 at 163.601 kb on - strand, within AO353_00740 at 163.601 kb on - strand, within AO353_00740 at 163.602 kb on + strand, within AO353_00740 at 163.642 kb on - strand at 163.642 kb on - strand at 163.642 kb on - strand at 163.688 kb on - strand at 163.688 kb on - strand at 163.796 kb on - strand at 163.801 kb on + strand at 163.801 kb on + strand at 164.014 kb on + strand, within AO353_00745 at 164.014 kb on + strand, within AO353_00745 at 164.014 kb on + strand, within AO353_00745 at 164.014 kb on + strand, within AO353_00745 at 164.014 kb on + strand, within AO353_00745 at 164.014 kb on + strand, within AO353_00745 at 164.014 kb on + strand, within AO353_00745 at 164.014 kb on + strand, within AO353_00745 at 164.014 kb on + strand, within AO353_00745 at 164.014 kb on + strand, within AO353_00745 at 164.014 kb on + strand, within AO353_00745 at 164.015 kb on - strand, within AO353_00745 at 164.015 kb on - strand, within AO353_00745 at 164.015 kb on - strand, within AO353_00745 at 164.015 kb on - strand, within AO353_00745 at 164.015 kb on - strand, within AO353_00745 at 164.230 kb on + strand, within AO353_00745 at 164.231 kb on - strand, within AO353_00745 at 164.231 kb on - strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.257 kb on + strand, within AO353_00745 at 164.258 kb on - strand, within AO353_00745 at 164.258 kb on - strand, within AO353_00745 at 164.312 kb on - strand, within AO353_00745 at 164.312 kb on - strand, within AO353_00745 at 164.398 kb on + strand at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.398 kb on + strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.399 kb on - strand, within AO353_00745 at 164.485 kb on + strand, within AO353_00745 at 164.486 kb on - strand, within AO353_00745 at 164.486 kb on - strand at 164.494 kb on + strand, within AO353_00745 at 164.494 kb on + strand, within AO353_00745 at 164.495 kb on - strand, within AO353_00745
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, acetate donor; nitrate and iron remove 161,995 + AO353_00735 0.70 -2.3 161,995 + AO353_00735 0.70 -0.8 161,995 + AO353_00735 0.70 -0.5 161,995 + AO353_00735 0.70 -0.2 161,995 + AO353_00735 0.70 -0.4 161,996 - AO353_00735 0.70 +0.8 161,996 - AO353_00735 0.70 +1.1 161,996 - AO353_00735 0.70 -0.6 161,996 - AO353_00735 0.70 +1.3 162,018 - AO353_00735 0.71 -2.5 162,018 - AO353_00735 0.71 -1.3 162,088 + AO353_00735 0.74 +0.4 162,088 + AO353_00735 0.74 +0.5 162,088 + AO353_00735 0.74 -0.4 162,089 - AO353_00735 0.74 -0.7 162,089 - AO353_00735 0.74 +0.1 162,124 + AO353_00735 0.76 +3.0 162,124 + AO353_00735 0.76 +0.5 162,125 - AO353_00735 0.76 -1.1 162,125 - AO353_00735 0.76 +2.0 162,125 - AO353_00735 0.76 +1.6 162,125 - AO353_00735 0.76 -1.5 162,125 - AO353_00735 0.76 -2.0 162,142 + AO353_00735 0.77 +3.5 162,142 + AO353_00735 0.77 +0.5 162,142 + AO353_00735 0.77 -2.3 162,142 + AO353_00735 0.77 -0.4 162,143 - AO353_00735 0.77 -1.2 162,145 + AO353_00735 0.77 +1.4 162,145 + AO353_00735 0.77 -0.4 162,145 + AO353_00735 0.77 +2.4 162,145 + AO353_00735 0.77 +1.4 162,145 + AO353_00735 0.77 +2.2 162,145 + AO353_00735 0.77 -0.2 162,145 + AO353_00735 0.77 -1.9 162,145 + AO353_00735 0.77 +0.1 162,146 - AO353_00735 0.77 +0.9 162,146 - AO353_00735 0.77 -2.8 162,146 - AO353_00735 0.77 -0.5 162,146 - AO353_00735 0.77 +1.1 162,146 - AO353_00735 0.77 +0.4 162,146 - AO353_00735 0.77 -0.9 162,146 - AO353_00735 0.77 +0.6 162,146 - AO353_00735 0.77 -1.3 162,178 + AO353_00735 0.78 +1.1 162,178 + AO353_00735 0.78 -0.9 162,178 + AO353_00735 0.78 -1.3 162,178 + AO353_00735 0.78 -0.6 162,178 + AO353_00735 0.78 +0.1 162,178 + AO353_00735 0.78 -0.2 162,178 + AO353_00735 0.78 -2.3 162,179 - AO353_00735 0.78 -1.8 162,179 - AO353_00735 0.78 -1.2 162,179 - AO353_00735 0.78 -2.5 162,179 - AO353_00735 0.78 -2.3 162,179 - AO353_00735 0.78 -0.4 162,179 - AO353_00735 0.78 +3.0 162,179 - AO353_00735 0.78 +0.4 162,181 + AO353_00735 0.78 +4.7 162,181 + AO353_00735 0.78 -0.2 162,181 + AO353_00735 0.78 -1.1 162,182 - AO353_00735 0.78 +0.4 162,182 - AO353_00735 0.78 +0.4 162,182 - AO353_00735 0.78 -0.9 162,182 - AO353_00735 0.78 -1.8 162,184 + AO353_00735 0.78 -1.7 162,184 + AO353_00735 0.78 -0.1 162,184 + AO353_00735 0.78 +1.0 162,238 + AO353_00735 0.81 +1.0 162,239 - AO353_00735 0.81 +1.4 162,406 + AO353_00735 0.88 -1.6 162,406 + AO353_00735 0.88 -0.2 162,407 - AO353_00735 0.88 -1.2 162,407 - AO353_00735 0.88 -1.7 162,407 - AO353_00735 0.88 +0.9 162,407 - AO353_00735 0.88 +1.5 162,703 + +0.1 162,742 + -0.4 162,742 + -1.4 162,742 + +2.6 162,742 + +1.2 162,742 + -3.2 162,743 - -1.5 162,788 + +2.2 162,788 + -0.6 162,850 + +3.7 162,850 + -0.6 162,850 + -0.8 162,850 + +1.4 162,850 + +0.1 162,850 + -2.3 162,850 + +0.8 162,850 + -2.5 162,850 + +1.0 162,851 - -2.1 162,851 - -1.6 162,851 - -2.3 162,851 - -2.1 162,851 - -0.7 162,851 - -1.8 162,851 - -0.8 162,851 - -0.8 162,851 - -0.8 162,851 - -2.7 162,851 - +1.7 162,851 - +1.4 163,012 + AO353_00740 0.20 -1.1 163,012 + AO353_00740 0.20 +3.3 163,012 + AO353_00740 0.20 +0.8 163,012 + AO353_00740 0.20 -3.2 163,012 + AO353_00740 0.20 -0.3 163,013 - AO353_00740 0.20 -1.7 163,151 + AO353_00740 0.36 -1.6 163,151 + AO353_00740 0.36 -0.2 163,152 - AO353_00740 0.36 -0.8 163,169 + AO353_00740 0.38 -1.6 163,290 + AO353_00740 0.53 -1.4 163,291 - AO353_00740 0.53 -0.2 163,346 - AO353_00740 0.59 -1.1 163,423 + AO353_00740 0.68 -2.5 163,423 + AO353_00740 0.68 -0.9 163,423 + AO353_00740 0.68 +2.4 163,424 - AO353_00740 0.68 -0.9 163,424 - AO353_00740 0.68 +0.4 163,600 + AO353_00740 0.89 -0.4 163,600 + AO353_00740 0.89 +0.1 163,600 + AO353_00740 0.89 -1.8 163,600 + AO353_00740 0.89 +0.6 163,600 + AO353_00740 0.89 -2.1 163,600 + AO353_00740 0.89 -0.8 163,600 + AO353_00740 0.89 -0.6 163,600 + AO353_00740 0.89 +1.6 163,600 + AO353_00740 0.89 -1.6 163,600 + AO353_00740 0.89 +3.0 163,601 - AO353_00740 0.89 -1.9 163,601 - AO353_00740 0.89 +0.1 163,601 - AO353_00740 0.89 -0.8 163,601 - AO353_00740 0.89 -2.0 163,601 - AO353_00740 0.89 -1.3 163,601 - AO353_00740 0.89 -0.8 163,601 - AO353_00740 0.89 -0.7 163,602 + AO353_00740 0.90 +1.3 163,642 - -0.9 163,642 - -1.1 163,642 - -1.4 163,688 - +0.2 163,688 - -3.0 163,796 - -2.0 163,801 + +1.1 163,801 + -0.2 164,014 + AO353_00745 0.23 -2.2 164,014 + AO353_00745 0.23 -2.2 164,014 + AO353_00745 0.23 -2.4 164,014 + AO353_00745 0.23 -2.6 164,014 + AO353_00745 0.23 +1.7 164,014 + AO353_00745 0.23 +2.2 164,014 + AO353_00745 0.23 -3.4 164,014 + AO353_00745 0.23 -2.2 164,014 + AO353_00745 0.23 -3.0 164,014 + AO353_00745 0.23 +1.2 164,014 + AO353_00745 0.23 +0.2 164,015 - AO353_00745 0.23 +0.0 164,015 - AO353_00745 0.23 +1.2 164,015 - AO353_00745 0.23 +2.6 164,015 - AO353_00745 0.23 +1.6 164,015 - AO353_00745 0.23 -1.4 164,230 + AO353_00745 0.40 -1.1 164,231 - AO353_00745 0.40 +0.6 164,231 - AO353_00745 0.40 +1.0 164,257 + AO353_00745 0.42 +3.0 164,257 + AO353_00745 0.42 +0.9 164,257 + AO353_00745 0.42 -2.1 164,257 + AO353_00745 0.42 -1.8 164,257 + AO353_00745 0.42 +1.5 164,258 - AO353_00745 0.42 +0.7 164,258 - AO353_00745 0.42 -0.7 164,312 - AO353_00745 0.46 +0.3 164,312 - AO353_00745 0.46 +1.6 164,398 + -1.6 164,398 + AO353_00745 0.52 -0.4 164,398 + AO353_00745 0.52 -0.2 164,398 + AO353_00745 0.52 -2.5 164,398 + AO353_00745 0.52 -1.7 164,398 + AO353_00745 0.52 +1.4 164,398 + AO353_00745 0.52 -1.5 164,398 + AO353_00745 0.52 -1.6 164,399 - AO353_00745 0.52 +0.5 164,399 - AO353_00745 0.52 -1.8 164,399 - AO353_00745 0.52 -1.9 164,399 - AO353_00745 0.52 -1.6 164,399 - AO353_00745 0.52 -3.1 164,399 - AO353_00745 0.52 -0.3 164,485 + AO353_00745 0.59 -1.5 164,486 - AO353_00745 0.59 +0.6 164,486 - +0.1 164,494 + AO353_00745 0.60 -1.8 164,494 + AO353_00745 0.60 -1.9 164,495 - AO353_00745 0.60 +0.4
Or see this region's nucleotide sequence