Experiment: Agro_defined_trehalose 1x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0640 and BT0641 are separated by 111 nucleotides BT0641 and BT0642 are separated by 119 nucleotides
BT0640: BT0640 - Fe-S oxidoreductases family 2 (NCBI ptt file), at 788,459 to 790,102
BT0640
BT0641: BT0641 - hypothetical protein (NCBI ptt file), at 790,214 to 790,615
BT0641
BT0642: BT0642 - RNA pseudouridylate synthase (NCBI ptt file), at 790,735 to 791,655
BT0642
Position (kb) 790
791 Strain fitness (log2 ratio) -2
-1
0
1
2 at 789.245 kb on - strand, within BT0640 at 789.452 kb on - strand, within BT0640 at 789.452 kb on - strand, within BT0640 at 789.680 kb on + strand, within BT0640 at 789.681 kb on - strand, within BT0640 at 789.711 kb on - strand, within BT0640 at 789.744 kb on - strand, within BT0640 at 789.808 kb on + strand, within BT0640 at 789.854 kb on + strand, within BT0640 at 789.906 kb on - strand, within BT0640 at 790.037 kb on + strand at 790.038 kb on - strand at 790.038 kb on - strand at 790.117 kb on - strand at 790.119 kb on + strand at 790.159 kb on - strand at 790.160 kb on + strand at 790.300 kb on - strand, within BT0641 at 790.311 kb on + strand, within BT0641 at 790.355 kb on - strand, within BT0641 at 790.355 kb on - strand, within BT0641 at 790.355 kb on - strand, within BT0641 at 790.404 kb on + strand, within BT0641 at 790.438 kb on - strand, within BT0641 at 790.521 kb on + strand, within BT0641 at 790.532 kb on + strand, within BT0641 at 790.578 kb on + strand at 790.578 kb on + strand at 790.609 kb on + strand at 790.693 kb on + strand at 790.694 kb on - strand at 790.736 kb on + strand at 790.737 kb on - strand at 790.759 kb on - strand at 790.792 kb on + strand at 790.792 kb on + strand at 790.793 kb on - strand at 790.814 kb on + strand at 790.814 kb on + strand at 790.814 kb on + strand at 790.814 kb on + strand at 790.815 kb on - strand at 790.894 kb on + strand, within BT0642 at 790.900 kb on - strand, within BT0642 at 790.900 kb on - strand, within BT0642 at 790.910 kb on - strand, within BT0642 at 790.920 kb on + strand, within BT0642 at 790.924 kb on + strand, within BT0642 at 790.941 kb on + strand, within BT0642 at 790.973 kb on + strand, within BT0642 at 790.984 kb on - strand, within BT0642 at 791.050 kb on + strand, within BT0642 at 791.055 kb on - strand, within BT0642 at 791.093 kb on + strand, within BT0642 at 791.126 kb on - strand, within BT0642 at 791.168 kb on - strand, within BT0642 at 791.206 kb on + strand, within BT0642 at 791.217 kb on + strand, within BT0642 at 791.272 kb on + strand, within BT0642 at 791.293 kb on - strand, within BT0642 at 791.294 kb on + strand, within BT0642 at 791.295 kb on - strand, within BT0642 at 791.364 kb on + strand, within BT0642 at 791.366 kb on + strand, within BT0642 at 791.367 kb on - strand, within BT0642 at 791.488 kb on - strand, within BT0642 at 791.572 kb on + strand at 791.573 kb on - strand at 791.598 kb on - strand at 791.605 kb on - strand at 791.605 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Agro_defined_trehalose 1x (C) remove 789,245 - BT0640 0.48 -1.7 789,452 - BT0640 0.60 -1.5 789,452 - BT0640 0.60 +2.1 789,680 + BT0640 0.74 +0.4 789,681 - BT0640 0.74 -1.6 789,711 - BT0640 0.76 -0.3 789,744 - BT0640 0.78 -0.6 789,808 + BT0640 0.82 -0.0 789,854 + BT0640 0.85 -0.0 789,906 - BT0640 0.88 +0.1 790,037 + -0.2 790,038 - -0.8 790,038 - -2.5 790,117 - -1.5 790,119 + +0.7 790,159 - +0.1 790,160 + -0.6 790,300 - BT0641 0.21 +0.3 790,311 + BT0641 0.24 -0.3 790,355 - BT0641 0.35 -2.1 790,355 - BT0641 0.35 +0.0 790,355 - BT0641 0.35 -0.3 790,404 + BT0641 0.47 -0.6 790,438 - BT0641 0.56 +0.4 790,521 + BT0641 0.76 -1.8 790,532 + BT0641 0.79 +1.3 790,578 + +0.6 790,578 + -0.3 790,609 + +0.3 790,693 + +1.4 790,694 - -2.0 790,736 + +1.7 790,737 - -0.1 790,759 - -1.6 790,792 + -2.0 790,792 + -1.3 790,793 - -0.9 790,814 + +0.3 790,814 + -1.2 790,814 + +0.1 790,814 + -0.6 790,815 - +0.3 790,894 + BT0642 0.17 -0.5 790,900 - BT0642 0.18 +0.2 790,900 - BT0642 0.18 +1.3 790,910 - BT0642 0.19 -2.4 790,920 + BT0642 0.20 -0.3 790,924 + BT0642 0.21 -1.1 790,941 + BT0642 0.22 -1.9 790,973 + BT0642 0.26 -0.9 790,984 - BT0642 0.27 -2.0 791,050 + BT0642 0.34 -1.2 791,055 - BT0642 0.35 -1.2 791,093 + BT0642 0.39 +0.1 791,126 - BT0642 0.42 -1.7 791,168 - BT0642 0.47 -1.9 791,206 + BT0642 0.51 +0.4 791,217 + BT0642 0.52 -1.8 791,272 + BT0642 0.58 +0.4 791,293 - BT0642 0.61 -0.3 791,294 + BT0642 0.61 +0.1 791,295 - BT0642 0.61 +0.7 791,364 + BT0642 0.68 +0.0 791,366 + BT0642 0.69 +0.4 791,367 - BT0642 0.69 +0.7 791,488 - BT0642 0.82 -0.1 791,572 + +0.8 791,573 - -1.4 791,598 - -0.2 791,605 - -0.4 791,605 - -0.7
Or see this region's nucleotide sequence