Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3048

Experiment: D-Trehalose 20mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 20mM (C)
3,860,603	+		BT3047	0.50	-0.8
3,860,626	+		BT3047	0.52	-0.2
3,860,640	-		BT3047	0.53	+0.4
3,860,691	+		BT3047	0.57	-0.1
3,860,729	+		BT3047	0.60	-1.1
3,860,729	+		BT3047	0.60	-0.1
3,860,730	-		BT3047	0.60	-1.6
3,860,749	-		BT3047	0.62	-0.8
3,860,753	+		BT3047	0.62	-0.7
3,860,778	+		BT3047	0.64	-0.9
3,860,779	-		BT3047	0.64	+0.6
3,860,845	-		BT3047	0.69	-0.5
3,860,862	-		BT3047	0.70	-0.5
3,860,864	+		BT3047	0.70	-2.2
3,860,868	+		BT3047	0.71	-0.5
3,860,869	-		BT3047	0.71	-0.3
3,860,887	+		BT3047	0.72	+0.8
3,860,887	+		BT3047	0.72	-3.4
3,860,973	-		BT3047	0.79	-0.8
3,860,990	+		BT3047	0.80	+1.2
3,861,030	-		BT3047	0.83	-1.0
3,861,084	+		BT3047	0.87	-2.4
3,861,171	-				-1.1
3,861,222	+				-0.6
3,861,222	+				-1.0
3,861,222	+				+0.0
3,861,237	+				-1.7
3,861,238	-				-3.0
3,861,238	-				+0.0
3,861,263	+				-1.0
3,861,267	+				+0.4
3,861,275	+				-2.0
3,861,297	+				+0.5
3,861,315	-				-0.5
3,861,344	+				-2.8
3,861,436	+				-1.5
3,861,497	+				-1.7
3,861,520	+				-2.6
3,861,578	-				-3.5
3,861,589	-				+1.2
3,861,607	+				-1.5
3,861,612	+				+0.6
3,861,613	-				+0.4
3,861,613	-				-0.4
3,861,615	-				-1.9
3,861,619	+				-0.6
3,861,620	-				-1.4
3,861,649	+				-0.4
3,861,649	+				-0.4
3,861,672	+				-1.8
3,861,695	+				+0.6
3,861,695	+				+0.0
3,861,712	-				-0.3
3,861,776	+				-0.2
3,861,830	+				-2.2
3,861,840	+				-1.7
3,861,844	+				-0.7
3,861,848	+				-0.8
3,861,848	+				-1.1
3,861,872	+		BT3048	0.10	-1.6
3,861,875	-		BT3048	0.10	-0.6
3,861,922	-		BT3048	0.12	-1.6
3,861,924	+		BT3048	0.12	-0.4
3,861,925	-		BT3048	0.12	+0.4
3,861,957	-		BT3048	0.13	-1.8
3,862,008	+		BT3048	0.15	-1.3
3,862,010	+		BT3048	0.15	-2.4
3,862,094	+				+1.0
3,862,147	+		BT3048	0.20	-2.7
3,862,164	-		BT3048	0.21	-2.3
3,862,164	-		BT3048	0.21	+0.9
3,862,192	+		BT3048	0.22	-1.3
3,862,192	+		BT3048	0.22	-0.6
3,862,192	+		BT3048	0.22	-1.0
3,862,207	+		BT3048	0.22	-1.7
3,862,207	+		BT3048	0.22	-2.5
3,862,213	-		BT3048	0.23	-2.0
3,862,213	-		BT3048	0.23	-0.8
3,862,231	-		BT3048	0.23	+0.8
3,862,250	+		BT3048	0.24	-1.2
3,862,297	-		BT3048	0.26	-1.1
3,862,314	-		BT3048	0.26	-2.7
3,862,325	-		BT3048	0.27	-3.1
3,862,325	-		BT3048	0.27	-2.6
3,862,340	+		BT3048	0.27	-0.8
3,862,352	+		BT3048	0.28	+0.9
3,862,373	+		BT3048	0.29	-2.0
3,862,373	+		BT3048	0.29	-0.5
3,862,373	+		BT3048	0.29	+0.7
3,862,375	+		BT3048	0.29	-2.1
3,862,375	+		BT3048	0.29	-0.5
3,862,375	+		BT3048	0.29	-2.5
3,862,376	-		BT3048	0.29	-0.8
3,862,495	+		BT3048	0.33	-0.5
3,862,565	-		BT3048	0.36	+1.7
3,862,565	-		BT3048	0.36	-2.1
3,862,565	-		BT3048	0.36	-1.6
3,862,568	-		BT3048	0.36	-1.6
3,862,656	+		BT3048	0.39	-1.3
3,862,670	+		BT3048	0.40	-0.3
3,862,670	+		BT3048	0.40	-1.9
3,862,671	-		BT3048	0.40	-1.1
3,862,689	+		BT3048	0.40	-0.5
3,862,766	+		BT3048	0.43	-0.2
3,862,766	+		BT3048	0.43	-0.3
3,862,846	+		BT3048	0.46	-1.7
3,862,872	+		BT3048	0.47	-1.0
3,862,873	-		BT3048	0.47	-0.2
3,862,891	+		BT3048	0.48	-1.0
3,862,891	+		BT3048	0.48	-1.1
3,862,982	+		BT3048	0.51	-1.0
3,862,985	-		BT3048	0.51	-1.8
3,863,036	-		BT3048	0.53	+0.4
3,863,055	+		BT3048	0.54	-0.7
3,863,055	+		BT3048	0.54	-1.9
3,863,073	+		BT3048	0.55	-3.5
3,863,172	-		BT3048	0.58	-1.9
3,863,254	-		BT3048	0.61	-0.1
3,863,449	-		BT3048	0.69	-0.6
3,863,452	+		BT3048	0.69	+0.0
3,863,453	-		BT3048	0.69	+0.4
3,863,503	+		BT3048	0.71	-1.2
3,863,504	-		BT3048	0.71	-0.4
3,863,676	+		BT3048	0.77	-1.0
3,863,677	-		BT3048	0.77	-0.3
3,863,677	-		BT3048	0.77	-1.1
3,863,684	+		BT3048	0.77	-0.5
3,863,685	-		BT3048	0.77	-0.9
3,863,720	+		BT3048	0.79	-1.7
3,863,769	-		BT3048	0.81	-2.0
3,863,774	-		BT3048	0.81	+1.2
3,863,774	-		BT3048	0.81	-1.3
3,863,777	+		BT3048	0.81	+0.4
3,863,777	+		BT3048	0.81	-0.8
3,863,777	+		BT3048	0.81	-1.1
3,863,778	-		BT3048	0.81	+2.0
3,863,778	-		BT3048	0.81	-1.4
3,863,783	+		BT3048	0.81	+1.7
3,863,882	-		BT3048	0.85	-2.2
3,863,896	+		BT3048	0.85	-1.0
3,863,899	+		BT3048	0.85	-0.1
3,863,900	-		BT3048	0.85	-1.3
3,863,915	+		BT3048	0.86	-0.7
3,863,955	-		BT3048	0.88	-1.6
3,863,955	-		BT3048	0.88	-1.0
3,864,010	+		BT3048	0.90	-1.8
3,864,036	+				+0.4
3,864,057	+				-0.6
3,864,061	+				-0.9
3,864,091	+				-0.4
3,864,092	-				-0.6
3,864,095	-				-1.5
3,864,095	-				+0.9
3,864,095	-				-0.6
3,864,095	-				+0.2
3,864,185	+				-0.8
3,864,237	-				+0.2
3,864,260	+				-1.8
3,864,260	+				-1.1
3,864,261	-				-2.3
3,864,261	-				-1.6
3,864,273	+				-2.1
3,864,304	+				-0.5
3,864,305	-				-2.6
3,864,335	-				-0.4
3,864,412	+				-2.1
3,864,425	+				-3.5
3,864,461	+				-3.1
3,864,462	-				-0.3
3,864,484	+				+0.1
3,864,588	-				-1.8
3,864,669	+				+1.0
3,864,677	-				+1.0
3,864,679	+				-0.8
3,864,681	+				-0.3
3,864,740	-				-1.0
3,864,740	-				-2.1
3,864,835	+				-1.0
3,864,837	+				-1.3
3,864,885	+				-0.9
3,864,920	+		BT3049	0.11	-2.7
3,864,920	+		BT3049	0.11	-0.9
3,864,920	+		BT3049	0.11	-0.6
3,864,920	+		BT3049	0.11	+0.0
3,864,921	-		BT3049	0.11	+2.2
3,864,921	-		BT3049	0.11	-1.0
3,864,925	-		BT3049	0.11	+0.6
3,864,928	+		BT3049	0.11	-1.6
3,864,928	+		BT3049	0.11	-1.2
3,864,928	+		BT3049	0.11	-2.1
3,864,929	-		BT3049	0.11	-1.6
3,864,939	+		BT3049	0.11	-1.5
3,864,941	+		BT3049	0.11	+0.1
3,864,946	+		BT3049	0.11	-0.4
3,864,979	+		BT3049	0.12	-0.3
3,865,054	+		BT3049	0.14	-1.8
3,865,067	+		BT3049	0.14	-1.9
3,865,170	+		BT3049	0.17	-0.8
3,865,170	+		BT3049	0.17	+0.6
3,865,183	-		BT3049	0.17	+1.0
3,865,195	-		BT3049	0.17	+0.2
3,865,197	-		BT3049	0.17	+0.0
3,865,220	-		BT3049	0.18	+0.0
3,865,251	+		BT3049	0.19	-3.5