Experiment: D-Trehalose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0649 and BT0650 are separated by 71 nucleotides BT0650 and BT0651 are separated by 80 nucleotides BT0651 and BT0652 are separated by 12 nucleotides
BT0649: BT0649 - thiamine biosynthesis protein ThiH (NCBI ptt file), at 799,025 to 800,149
BT0649
BT0650: BT0650 - thiamine biosynthesis protein ThiC (NCBI ptt file), at 800,221 to 801,918
BT0650
BT0651: BT0651 - thiamine biosynthesis protein ThiG (NCBI ptt file), at 801,999 to 802,772
BT0651
BT0652: BT0652 - putative thiamine-phosphate pyrophosphorylase (NCBI ptt file), at 802,785 to 803,414
BT0652
Position (kb) 800
801
802 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 799.268 kb on + strand, within BT0649 at 799.389 kb on + strand, within BT0649 at 799.431 kb on + strand, within BT0649 at 799.431 kb on + strand, within BT0649 at 799.516 kb on + strand, within BT0649 at 799.579 kb on + strand, within BT0649 at 799.812 kb on + strand, within BT0649 at 799.914 kb on + strand, within BT0649 at 799.963 kb on - strand, within BT0649 at 800.061 kb on - strand at 800.094 kb on + strand at 800.223 kb on - strand at 800.261 kb on - strand at 800.300 kb on + strand at 800.300 kb on + strand at 800.498 kb on - strand, within BT0650 at 800.554 kb on - strand, within BT0650 at 800.563 kb on + strand, within BT0650 at 800.599 kb on - strand, within BT0650 at 800.624 kb on + strand, within BT0650 at 800.714 kb on - strand, within BT0650 at 800.714 kb on - strand, within BT0650 at 800.870 kb on + strand, within BT0650 at 801.009 kb on + strand, within BT0650 at 801.009 kb on + strand, within BT0650 at 801.010 kb on - strand, within BT0650 at 801.010 kb on - strand, within BT0650 at 801.137 kb on + strand, within BT0650 at 801.201 kb on + strand, within BT0650 at 801.201 kb on + strand, within BT0650 at 801.432 kb on + strand, within BT0650 at 801.711 kb on + strand, within BT0650 at 801.758 kb on + strand at 801.760 kb on + strand at 801.760 kb on + strand at 801.765 kb on - strand at 801.972 kb on + strand at 801.976 kb on - strand at 801.983 kb on - strand at 801.986 kb on + strand at 802.159 kb on - strand, within BT0651 at 802.295 kb on + strand, within BT0651 at 802.496 kb on + strand, within BT0651 at 802.592 kb on + strand, within BT0651 at 802.596 kb on - strand at 802.692 kb on + strand, within BT0651 at 802.693 kb on - strand, within BT0651 at 802.905 kb on - strand, within BT0652 at 802.905 kb on - strand, within BT0652
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C) remove 799,268 + BT0649 0.22 +0.1 799,389 + BT0649 0.32 +0.2 799,431 + BT0649 0.36 -1.1 799,431 + BT0649 0.36 -1.9 799,516 + BT0649 0.44 +0.2 799,579 + BT0649 0.49 -3.3 799,812 + BT0649 0.70 -1.5 799,914 + BT0649 0.79 -0.3 799,963 - BT0649 0.83 -1.8 800,061 - -2.6 800,094 + -3.3 800,223 - -1.0 800,261 - -2.1 800,300 + -1.1 800,300 + -2.2 800,498 - BT0650 0.16 -1.6 800,554 - BT0650 0.20 +2.6 800,563 + BT0650 0.20 -1.3 800,599 - BT0650 0.22 -0.1 800,624 + BT0650 0.24 -1.6 800,714 - BT0650 0.29 -0.1 800,714 - BT0650 0.29 -2.0 800,870 + BT0650 0.38 -1.8 801,009 + BT0650 0.46 -2.1 801,009 + BT0650 0.46 -4.1 801,010 - BT0650 0.46 -1.8 801,010 - BT0650 0.46 -0.3 801,137 + BT0650 0.54 -1.3 801,201 + BT0650 0.58 -3.0 801,201 + BT0650 0.58 -2.5 801,432 + BT0650 0.71 -2.1 801,711 + BT0650 0.88 +1.2 801,758 + -0.9 801,760 + -2.3 801,760 + -0.6 801,765 - +0.2 801,972 + -0.6 801,976 - +1.2 801,983 - -0.1 801,986 + -2.5 802,159 - BT0651 0.21 -0.9 802,295 + BT0651 0.38 -0.4 802,496 + BT0651 0.64 +0.2 802,592 + BT0651 0.77 -2.0 802,596 - -1.1 802,692 + BT0651 0.90 -0.8 802,693 - BT0651 0.90 -0.6 802,905 - BT0652 0.19 -2.7 802,905 - BT0652 0.19 -2.8
Or see this region's nucleotide sequence