Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_727

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_726 and Pf6N2E2_727 are separated by 308 nucleotidesPf6N2E2_727 and Pf6N2E2_728 overlap by 23 nucleotides Pf6N2E2_726 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 829,387 to 831,186 _726 Pf6N2E2_727 - Nitrate/nitrite transporter, at 831,495 to 832,796 _727 Pf6N2E2_728 - Nitrate/nitrite transporter, at 832,774 to 834,171 _728 Position (kb) 831 832 833Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 830.667 kb on - strand, within Pf6N2E2_726at 830.882 kb on + strand, within Pf6N2E2_726at 831.020 kb on + strandat 831.020 kb on + strandat 831.021 kb on - strandat 831.021 kb on - strandat 831.021 kb on - strandat 831.251 kb on - strandat 831.251 kb on - strandat 831.272 kb on + strandat 831.272 kb on + strandat 831.272 kb on + strandat 831.273 kb on - strandat 831.334 kb on - strandat 831.354 kb on - strandat 831.383 kb on + strandat 831.384 kb on - strandat 831.398 kb on + strandat 831.459 kb on + strandat 831.459 kb on + strandat 831.459 kb on + strandat 831.459 kb on + strandat 831.460 kb on - strandat 831.523 kb on + strandat 831.523 kb on + strandat 831.536 kb on + strandat 831.536 kb on + strandat 831.759 kb on + strand, within Pf6N2E2_727at 831.760 kb on - strand, within Pf6N2E2_727at 831.852 kb on + strand, within Pf6N2E2_727at 831.852 kb on + strand, within Pf6N2E2_727at 831.852 kb on + strand, within Pf6N2E2_727at 832.134 kb on + strand, within Pf6N2E2_727at 832.135 kb on - strand, within Pf6N2E2_727at 832.135 kb on - strand, within Pf6N2E2_727at 832.137 kb on + strand, within Pf6N2E2_727at 832.159 kb on - strand, within Pf6N2E2_727at 832.159 kb on - strand, within Pf6N2E2_727at 832.188 kb on + strand, within Pf6N2E2_727at 832.188 kb on + strand, within Pf6N2E2_727at 832.189 kb on - strand, within Pf6N2E2_727at 832.189 kb on - strand, within Pf6N2E2_727at 832.189 kb on - strand, within Pf6N2E2_727at 832.189 kb on - strand, within Pf6N2E2_727at 832.191 kb on + strand, within Pf6N2E2_727at 832.192 kb on - strand, within Pf6N2E2_727at 832.192 kb on - strand, within Pf6N2E2_727at 832.192 kb on - strand, within Pf6N2E2_727at 832.192 kb on - strand, within Pf6N2E2_727at 832.192 kb on - strand, within Pf6N2E2_727at 832.192 kb on - strand, within Pf6N2E2_727at 832.503 kb on + strand, within Pf6N2E2_727at 832.503 kb on + strand, within Pf6N2E2_727at 832.504 kb on - strand, within Pf6N2E2_727at 832.504 kb on - strand, within Pf6N2E2_727at 832.650 kb on + strand, within Pf6N2E2_727at 832.650 kb on + strand, within Pf6N2E2_727at 832.651 kb on - strand, within Pf6N2E2_727at 832.651 kb on - strand, within Pf6N2E2_727at 832.651 kb on - strand, within Pf6N2E2_727at 832.683 kb on + strandat 832.683 kb on + strandat 832.683 kb on + strandat 832.683 kb on + strandat 832.683 kb on + strandat 832.684 kb on - strandat 832.684 kb on - strandat 832.684 kb on - strandat 833.042 kb on - strand, within Pf6N2E2_728at 833.239 kb on + strand, within Pf6N2E2_728at 833.375 kb on + strand, within Pf6N2E2_728

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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830,667 - Pf6N2E2_726 0.71 -1.3
830,882 + Pf6N2E2_726 0.83 -3.3
831,020 + -1.8
831,020 + -3.3
831,021 - -0.7
831,021 - -1.0
831,021 - -3.2
831,251 - -0.4
831,251 - -0.2
831,272 + -4.4
831,272 + -1.1
831,272 + -1.2
831,273 - -2.0
831,334 - -3.4
831,354 - -1.9
831,383 + -2.6
831,384 - -2.0
831,398 + -2.1
831,459 + +1.1
831,459 + -1.3
831,459 + -0.0
831,459 + -0.4
831,460 - -0.6
831,523 + -1.1
831,523 + -2.2
831,536 + +2.3
831,536 + +0.4
831,759 + Pf6N2E2_727 0.20 +1.6
831,760 - Pf6N2E2_727 0.20 +1.6
831,852 + Pf6N2E2_727 0.27 -2.3
831,852 + Pf6N2E2_727 0.27 -0.3
831,852 + Pf6N2E2_727 0.27 +0.8
832,134 + Pf6N2E2_727 0.49 +0.6
832,135 - Pf6N2E2_727 0.49 -2.2
832,135 - Pf6N2E2_727 0.49 -2.2
832,137 + Pf6N2E2_727 0.49 -1.6
832,159 - Pf6N2E2_727 0.51 -2.0
832,159 - Pf6N2E2_727 0.51 -2.2
832,188 + Pf6N2E2_727 0.53 -0.4
832,188 + Pf6N2E2_727 0.53 -0.2
832,189 - Pf6N2E2_727 0.53 -3.1
832,189 - Pf6N2E2_727 0.53 -0.4
832,189 - Pf6N2E2_727 0.53 -0.0
832,189 - Pf6N2E2_727 0.53 -2.3
832,191 + Pf6N2E2_727 0.53 -0.8
832,192 - Pf6N2E2_727 0.54 -0.6
832,192 - Pf6N2E2_727 0.54 -2.0
832,192 - Pf6N2E2_727 0.54 +0.6
832,192 - Pf6N2E2_727 0.54 +1.6
832,192 - Pf6N2E2_727 0.54 -2.1
832,192 - Pf6N2E2_727 0.54 -1.6
832,503 + Pf6N2E2_727 0.77 +3.6
832,503 + Pf6N2E2_727 0.77 +1.3
832,504 - Pf6N2E2_727 0.77 -1.3
832,504 - Pf6N2E2_727 0.77 -0.0
832,650 + Pf6N2E2_727 0.89 +1.6
832,650 + Pf6N2E2_727 0.89 +1.2
832,651 - Pf6N2E2_727 0.89 -3.4
832,651 - Pf6N2E2_727 0.89 +0.6
832,651 - Pf6N2E2_727 0.89 -1.4
832,683 + +1.6
832,683 + +1.9
832,683 + +1.3
832,683 + +1.7
832,683 + +0.2
832,684 - -3.3
832,684 - +1.6
832,684 - -1.9
833,042 - Pf6N2E2_728 0.19 -2.3
833,239 + Pf6N2E2_728 0.33 +1.6
833,375 + Pf6N2E2_728 0.43 -3.6

Or see this region's nucleotide sequence