Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2188

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
2,592,013	+		Pf6N2E2_2187	0.40	-0.2
2,592,013	+		Pf6N2E2_2187	0.40	+0.5
2,592,014	-		Pf6N2E2_2187	0.40	-2.2
2,592,014	-		Pf6N2E2_2187	0.40	+0.4
2,592,014	-		Pf6N2E2_2187	0.40	-0.3
2,592,123	+		Pf6N2E2_2187	0.52	+0.3
2,592,152	+		Pf6N2E2_2187	0.55	-1.5
2,592,152	+		Pf6N2E2_2187	0.55	+0.2
2,592,153	-		Pf6N2E2_2187	0.55	-0.1
2,592,153	-		Pf6N2E2_2187	0.55	+0.5
2,592,215	+		Pf6N2E2_2187	0.62	+0.3
2,592,238	+		Pf6N2E2_2187	0.64	+0.8
2,592,238	+		Pf6N2E2_2187	0.64	-0.0
2,592,239	-		Pf6N2E2_2187	0.64	-0.0
2,592,239	-		Pf6N2E2_2187	0.64	-0.1
2,592,266	+		Pf6N2E2_2187	0.67	+1.5
2,592,267	-		Pf6N2E2_2187	0.67	+0.0
2,592,267	-		Pf6N2E2_2187	0.67	-0.3
2,592,267	-		Pf6N2E2_2187	0.67	+0.0
2,592,329	+		Pf6N2E2_2187	0.74	-0.3
2,592,329	+		Pf6N2E2_2187	0.74	+0.6
2,592,329	+		Pf6N2E2_2187	0.74	-0.6
2,592,329	+		Pf6N2E2_2187	0.74	-0.0
2,592,329	+		Pf6N2E2_2187	0.74	-0.3
2,592,330	-		Pf6N2E2_2187	0.74	+0.3
2,592,330	-		Pf6N2E2_2187	0.74	+0.5
2,592,570	-				-1.3
2,592,631	-				-0.5
2,592,631	-				+0.5
2,592,643	-				+0.5
2,592,721	-				+0.5
2,592,732	+				-0.4
2,592,737	+				+0.1
2,592,784	+				+1.5
2,592,784	+				-0.5
2,592,785	-				-1.6
2,592,785	-				-0.3
2,592,785	-				-2.9
2,592,785	-				-0.0
2,592,841	+		Pf6N2E2_2188	0.18	-0.7
2,592,842	-		Pf6N2E2_2188	0.18	-0.3
2,592,842	-		Pf6N2E2_2188	0.18	-0.3
2,592,892	+		Pf6N2E2_2188	0.31	-1.0
2,592,986	-		Pf6N2E2_2188	0.54	-1.6
2,592,986	-		Pf6N2E2_2188	0.54	-2.4
2,592,986	-		Pf6N2E2_2188	0.54	-2.4
2,593,169	-				+1.5
2,593,234	+				-0.0
2,593,234	+				-0.3
2,593,234	+				-0.4
2,593,235	-				+1.5
2,593,235	-				-0.0
2,593,283	-				-1.0
2,593,283	-				+0.5
2,593,392	+		Pf6N2E2_2189	0.14	-1.9
2,593,486	+		Pf6N2E2_2189	0.25	+1.5
2,593,486	+		Pf6N2E2_2189	0.25	+0.5
2,593,491	+		Pf6N2E2_2189	0.25	-0.8
2,593,491	+		Pf6N2E2_2189	0.25	-2.0
2,593,492	-		Pf6N2E2_2189	0.25	-2.2
2,593,762	-		Pf6N2E2_2189	0.55	-1.5
2,593,762	-		Pf6N2E2_2189	0.55	+1.5
2,593,776	+		Pf6N2E2_2189	0.57	+1.5
2,593,896	+		Pf6N2E2_2189	0.70	-1.0
2,593,896	+		Pf6N2E2_2189	0.70	-2.0
2,593,896	+		Pf6N2E2_2189	0.70	-1.5
2,593,897	-		Pf6N2E2_2189	0.70	-1.6
2,593,986	+		Pf6N2E2_2189	0.80	+1.1
2,594,031	+		Pf6N2E2_2189	0.85	-1.0
2,594,031	+		Pf6N2E2_2189	0.85	-1.0
2,594,032	-		Pf6N2E2_2189	0.85	-0.8
2,594,032	-		Pf6N2E2_2189	0.85	-0.0
2,594,032	-		Pf6N2E2_2189	0.85	-0.3
2,594,032	-		Pf6N2E2_2189	0.85	-2.0
2,594,032	-		Pf6N2E2_2189	0.85	+1.5