Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1885

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
2,236,393	+				+0.5
2,236,394	-				-0.3
2,236,464	-				+1.5
2,236,464	-				+3.5
2,236,464	-				-0.2
2,236,485	-				-1.2
2,236,496	-				+1.5
2,236,496	-				+1.9
2,236,501	+				-0.4
2,236,501	+				-0.2
2,236,677	+				+0.1
2,236,677	+				-0.5
2,236,768	+				+0.1
2,236,769	-				-0.4
2,236,783	+				+0.2
2,236,784	-				-0.2
2,236,784	-				-0.0
2,236,784	-				+1.5
2,236,784	-				-0.9
2,236,784	-				-1.6
2,236,787	+				+0.7
2,236,788	-				-2.0
2,236,788	-				+1.5
2,236,815	-				+0.0
2,236,880	+				+1.5
2,236,881	-				+0.7
2,236,883	+				+0.3
2,236,884	-				-0.4
2,236,884	-				+0.8
2,236,934	+				-0.5
2,236,941	-				-0.6
2,236,941	-				+1.5
2,236,950	-				-0.0
2,236,950	-				-0.1
2,237,042	+				+1.5
2,237,060	-				-1.8
2,237,062	-				+0.4
2,237,062	-				-1.6
2,237,132	+		Pf6N2E2_1885	0.11	-2.0
2,237,132	+		Pf6N2E2_1885	0.11	-1.1
2,237,151	-		Pf6N2E2_1885	0.16	-2.3
2,237,270	-		Pf6N2E2_1885	0.48	-0.7
2,237,464	+				-0.3
2,237,570	+				-1.6
2,237,571	-				-1.5
2,237,571	-				-0.8
2,237,743	+				-0.7
2,237,744	-				+1.0
2,237,744	-				+1.5
2,237,772	+				+0.2
2,237,864	+				+1.5
2,237,865	-				-0.2
2,237,920	+				-0.6
2,237,921	-				+0.2
2,237,921	-				+0.4
2,238,026	+				-0.4
2,238,102	-				+0.9
2,238,102	-				+0.5
2,238,157	-		Pf6N2E2_1886	0.39	-0.5
2,238,157	-		Pf6N2E2_1886	0.39	-0.3
2,238,160	-		Pf6N2E2_1886	0.41	-1.0
2,238,236	-				-0.4
2,238,236	-				-0.1
2,238,364	+				-0.1
2,238,364	+				+0.3
2,238,364	+				-0.1
2,238,364	+				-0.1
2,238,365	-				-0.9
2,238,365	-				+0.1
2,238,412	+				+0.4
2,238,415	+				-1.3
2,238,449	+		Pf6N2E2_1888	0.11	+0.5
2,238,450	-		Pf6N2E2_1888	0.11	-1.9
2,238,450	-		Pf6N2E2_1888	0.11	-1.5