Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1411

Experiment: Nitrate reduction, replicate B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1410 and Pf6N2E2_1411 overlap by 4 nucleotidesPf6N2E2_1411 and Pf6N2E2_1412 overlap by 15 nucleotidesPf6N2E2_1412 and Pf6N2E2_1413 are separated by 53 nucleotidesPf6N2E2_1413 and Pf6N2E2_1414 are separated by 158 nucleotides Pf6N2E2_1410 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 1,655,263 to 1,656,651 _1410 Pf6N2E2_1411 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 1,656,648 to 1,657,742 _1411 Pf6N2E2_1412 - hypothetical protein, at 1,657,728 to 1,658,063 _1412 Pf6N2E2_1413 - putative membrane protein, at 1,658,117 to 1,658,560 _1413 Pf6N2E2_1414 - hypothetical protein, at 1,658,719 to 1,658,901 _1414 Position (kb) 1656 1657 1658Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1655.697 kb on - strand, within Pf6N2E2_1410at 1655.783 kb on + strand, within Pf6N2E2_1410at 1655.783 kb on + strand, within Pf6N2E2_1410at 1655.783 kb on + strand, within Pf6N2E2_1410at 1655.783 kb on + strand, within Pf6N2E2_1410at 1655.784 kb on - strand, within Pf6N2E2_1410at 1655.784 kb on - strand, within Pf6N2E2_1410at 1655.784 kb on - strand, within Pf6N2E2_1410at 1655.909 kb on + strand, within Pf6N2E2_1410at 1655.909 kb on + strand, within Pf6N2E2_1410at 1655.909 kb on + strand, within Pf6N2E2_1410at 1655.916 kb on - strand, within Pf6N2E2_1410at 1655.916 kb on - strand, within Pf6N2E2_1410at 1656.000 kb on - strand, within Pf6N2E2_1410at 1656.000 kb on - strand, within Pf6N2E2_1410at 1656.000 kb on - strand, within Pf6N2E2_1410at 1656.290 kb on + strand, within Pf6N2E2_1410at 1656.291 kb on - strand, within Pf6N2E2_1410at 1656.443 kb on + strand, within Pf6N2E2_1410at 1656.476 kb on + strand, within Pf6N2E2_1410at 1656.476 kb on + strand, within Pf6N2E2_1410at 1656.476 kb on + strand, within Pf6N2E2_1410at 1656.477 kb on - strand, within Pf6N2E2_1410at 1656.477 kb on - strand, within Pf6N2E2_1410at 1656.477 kb on - strand, within Pf6N2E2_1410at 1656.477 kb on - strand, within Pf6N2E2_1410at 1656.578 kb on + strandat 1656.608 kb on + strandat 1656.988 kb on + strand, within Pf6N2E2_1411at 1656.989 kb on - strand, within Pf6N2E2_1411at 1657.014 kb on + strand, within Pf6N2E2_1411at 1657.014 kb on + strand, within Pf6N2E2_1411at 1657.014 kb on + strand, within Pf6N2E2_1411at 1657.015 kb on - strandat 1657.015 kb on - strand, within Pf6N2E2_1411at 1657.015 kb on - strand, within Pf6N2E2_1411at 1657.015 kb on - strand, within Pf6N2E2_1411at 1657.019 kb on - strand, within Pf6N2E2_1411at 1657.019 kb on - strand, within Pf6N2E2_1411at 1657.019 kb on - strand, within Pf6N2E2_1411at 1657.037 kb on + strand, within Pf6N2E2_1411at 1657.086 kb on - strand, within Pf6N2E2_1411at 1657.174 kb on + strand, within Pf6N2E2_1411at 1657.175 kb on - strand, within Pf6N2E2_1411at 1657.175 kb on - strand, within Pf6N2E2_1411at 1657.175 kb on - strand, within Pf6N2E2_1411at 1657.175 kb on - strand, within Pf6N2E2_1411at 1657.175 kb on - strand, within Pf6N2E2_1411at 1657.175 kb on - strand, within Pf6N2E2_1411at 1657.175 kb on - strand, within Pf6N2E2_1411at 1657.300 kb on + strand, within Pf6N2E2_1411at 1657.301 kb on - strand, within Pf6N2E2_1411at 1657.615 kb on + strand, within Pf6N2E2_1411at 1657.616 kb on - strand, within Pf6N2E2_1411at 1657.616 kb on - strand, within Pf6N2E2_1411at 1657.753 kb on + strandat 1657.754 kb on - strandat 1657.754 kb on - strandat 1657.935 kb on - strand, within Pf6N2E2_1412at 1657.935 kb on - strand, within Pf6N2E2_1412at 1657.935 kb on - strand, within Pf6N2E2_1412at 1657.935 kb on - strand, within Pf6N2E2_1412at 1657.941 kb on - strand, within Pf6N2E2_1412at 1658.130 kb on + strandat 1658.130 kb on + strandat 1658.130 kb on + strandat 1658.131 kb on - strandat 1658.131 kb on - strandat 1658.131 kb on - strandat 1658.131 kb on - strandat 1658.683 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
remove
1,655,697 - Pf6N2E2_1410 0.31 -1.1
1,655,783 + Pf6N2E2_1410 0.37 -0.8
1,655,783 + Pf6N2E2_1410 0.37 +0.1
1,655,783 + Pf6N2E2_1410 0.37 -1.6
1,655,783 + Pf6N2E2_1410 0.37 -0.8
1,655,784 - Pf6N2E2_1410 0.38 +0.5
1,655,784 - Pf6N2E2_1410 0.38 +0.2
1,655,784 - Pf6N2E2_1410 0.38 -1.0
1,655,909 + Pf6N2E2_1410 0.47 -1.5
1,655,909 + Pf6N2E2_1410 0.47 +0.4
1,655,909 + Pf6N2E2_1410 0.47 -0.0
1,655,916 - Pf6N2E2_1410 0.47 -1.0
1,655,916 - Pf6N2E2_1410 0.47 -0.3
1,656,000 - Pf6N2E2_1410 0.53 +1.6
1,656,000 - Pf6N2E2_1410 0.53 +1.6
1,656,000 - Pf6N2E2_1410 0.53 +0.7
1,656,290 + Pf6N2E2_1410 0.74 -1.3
1,656,291 - Pf6N2E2_1410 0.74 +0.3
1,656,443 + Pf6N2E2_1410 0.85 +0.2
1,656,476 + Pf6N2E2_1410 0.87 +1.9
1,656,476 + Pf6N2E2_1410 0.87 -0.3
1,656,476 + Pf6N2E2_1410 0.87 -1.2
1,656,477 - Pf6N2E2_1410 0.87 +1.1
1,656,477 - Pf6N2E2_1410 0.87 -0.0
1,656,477 - Pf6N2E2_1410 0.87 +1.6
1,656,477 - Pf6N2E2_1410 0.87 +0.3
1,656,578 + +0.0
1,656,608 + +1.6
1,656,988 + Pf6N2E2_1411 0.31 -2.7
1,656,989 - Pf6N2E2_1411 0.31 +1.6
1,657,014 + Pf6N2E2_1411 0.33 -2.8
1,657,014 + Pf6N2E2_1411 0.33 -3.2
1,657,014 + Pf6N2E2_1411 0.33 +1.6
1,657,015 - +1.6
1,657,015 - Pf6N2E2_1411 0.34 -1.2
1,657,015 - Pf6N2E2_1411 0.34 -1.5
1,657,015 - Pf6N2E2_1411 0.34 -0.4
1,657,019 - Pf6N2E2_1411 0.34 -1.1
1,657,019 - Pf6N2E2_1411 0.34 -1.9
1,657,019 - Pf6N2E2_1411 0.34 -2.0
1,657,037 + Pf6N2E2_1411 0.36 -3.6
1,657,086 - Pf6N2E2_1411 0.40 +1.6
1,657,174 + Pf6N2E2_1411 0.48 -3.1
1,657,175 - Pf6N2E2_1411 0.48 -2.5
1,657,175 - Pf6N2E2_1411 0.48 +1.6
1,657,175 - Pf6N2E2_1411 0.48 -1.9
1,657,175 - Pf6N2E2_1411 0.48 -1.4
1,657,175 - Pf6N2E2_1411 0.48 -0.4
1,657,175 - Pf6N2E2_1411 0.48 -2.2
1,657,175 - Pf6N2E2_1411 0.48 +0.6
1,657,300 + Pf6N2E2_1411 0.60 -2.0
1,657,301 - Pf6N2E2_1411 0.60 -1.8
1,657,615 + Pf6N2E2_1411 0.88 +1.6
1,657,616 - Pf6N2E2_1411 0.88 -0.9
1,657,616 - Pf6N2E2_1411 0.88 -2.6
1,657,753 + -1.2
1,657,754 - -1.9
1,657,754 - -2.4
1,657,935 - Pf6N2E2_1412 0.62 -1.7
1,657,935 - Pf6N2E2_1412 0.62 -0.0
1,657,935 - Pf6N2E2_1412 0.62 -0.3
1,657,935 - Pf6N2E2_1412 0.62 -1.1
1,657,941 - Pf6N2E2_1412 0.63 +0.2
1,658,130 + +0.3
1,658,130 + +0.0
1,658,130 + -0.1
1,658,131 - -0.2
1,658,131 - -0.2
1,658,131 - +1.2
1,658,131 - +0.2
1,658,683 - +0.9

Or see this region's nucleotide sequence