Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_895

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
1,047,555	+		Pf6N2E2_894	0.31	+0.3
1,047,556	-		Pf6N2E2_894	0.31	+0.9
1,047,556	-		Pf6N2E2_894	0.31	-1.1
1,047,591	+		Pf6N2E2_894	0.35	+1.5
1,047,592	-		Pf6N2E2_894	0.35	-1.0
1,047,592	-		Pf6N2E2_894	0.35	+0.2
1,047,630	+		Pf6N2E2_894	0.39	-0.7
1,047,631	-		Pf6N2E2_894	0.40	-0.3
1,047,657	+		Pf6N2E2_894	0.42	+0.4
1,047,657	+		Pf6N2E2_894	0.42	+0.2
1,047,657	+		Pf6N2E2_894	0.42	-0.4
1,047,657	+		Pf6N2E2_894	0.42	-1.3
1,047,658	-		Pf6N2E2_894	0.43	-0.6
1,047,804	+		Pf6N2E2_894	0.59	+0.2
1,047,805	-		Pf6N2E2_894	0.59	+0.2
1,047,871	-		Pf6N2E2_894	0.67	-0.2
1,047,910	+		Pf6N2E2_894	0.71	-0.1
1,048,098	+				-0.6
1,048,098	+				+0.2
1,048,098	+				-0.5
1,048,099	-				+0.6
1,048,116	+				-0.1
1,048,116	+				-0.1
1,048,137	+				-0.7
1,048,190	+				-1.0
1,048,191	-				+0.4
1,048,191	-				+1.0
1,048,191	-				+1.5
1,048,293	+				-0.8
1,048,293	+				-0.6
1,048,293	+				-1.5
1,048,293	+				+0.4
1,048,293	+				+1.5
1,048,293	+				+0.0
1,048,293	+				-0.2
1,048,294	-				-1.2
1,048,294	-				-0.8
1,048,294	-				+0.3
1,048,295	+				+0.8
1,048,295	+				-0.3
1,048,295	+				+0.2
1,048,295	+				-0.1
1,048,295	+				-0.3
1,048,295	+				+0.0
1,048,295	+				-0.4
1,048,295	+				-0.4
1,048,295	+				-0.5
1,048,296	-				+0.9
1,048,296	-				+0.8
1,048,296	-				-0.5
1,048,296	-				+1.5
1,048,296	-				-0.8
1,048,296	-				-0.6
1,048,297	+				-0.1
1,048,297	+				+1.2
1,048,297	+				-0.2
1,048,297	+				-0.5
1,048,297	+				+0.2
1,048,297	+				-1.5
1,048,297	+				+0.1
1,048,297	+				-0.1
1,048,297	+				-1.3
1,048,297	+				-0.0
1,048,297	+				-0.6
1,048,297	+				+0.2
1,048,297	+				+0.7
1,048,297	+				+1.9
1,048,297	+				-0.5
1,048,297	+				+0.5
1,048,297	+				-0.9
1,048,297	+				-0.1
1,048,297	+				-1.1
1,048,297	+				-0.7
1,048,297	+				-0.4
1,048,297	+				+0.0
1,048,297	+				-0.8
1,048,298	-				-1.1
1,048,298	-				-1.4
1,048,298	-				-0.1
1,048,298	-				-1.3
1,048,298	-				-1.0
1,048,298	-				-0.1
1,048,298	-				+1.5
1,048,298	-				-0.3
1,048,298	-				-0.3
1,048,298	-				+0.1
1,048,298	-				-1.6
1,048,301	+				+0.4
1,048,301	+				+0.5
1,048,301	+				-0.4
1,048,301	+				-0.1
1,048,301	+				-0.2
1,048,301	+				-0.6
1,048,302	-				-1.7
1,048,302	-				+0.0
1,048,302	-				-1.1
1,048,302	-				-2.5
1,048,302	-				-0.9
1,048,302	-				-1.6
1,048,305	+				+0.5
1,048,305	+				+0.6
1,048,305	+				+0.2
1,048,306	-				-0.9
1,048,306	-				-0.7
1,048,306	-				-0.1
1,048,306	-				-1.0
1,048,306	-				-1.9
1,048,313	+				-0.1
1,048,313	+				-0.4
1,048,314	-				-0.7
1,048,375	+				+0.0
1,048,376	-				-0.2
1,048,482	+				-0.4
1,048,482	+				-0.0
1,048,482	+				-0.6
1,048,485	+				-0.5
1,048,528	+				+1.5
1,048,529	-				+1.5
1,048,529	-				+0.1
1,048,529	-				-1.8
1,048,529	-				-0.8
1,048,645	-		Pf6N2E2_895	0.23	-2.9
1,048,768	+		Pf6N2E2_895	0.48	+1.5
1,048,768	+		Pf6N2E2_895	0.48	-1.7
1,048,795	+		Pf6N2E2_895	0.54	+0.5
1,048,795	+		Pf6N2E2_895	0.54	-2.7
1,048,795	+		Pf6N2E2_895	0.54	-1.8
1,048,818	+		Pf6N2E2_895	0.59	+1.5
1,048,818	+		Pf6N2E2_895	0.59	-1.1
1,048,819	-		Pf6N2E2_895	0.59	-3.2
1,048,930	+		Pf6N2E2_895	0.82	-0.6
1,048,930	+		Pf6N2E2_895	0.82	-1.5
1,048,930	+		Pf6N2E2_895	0.82	+0.5
1,048,930	+		Pf6N2E2_895	0.82	-0.2
1,048,935	+		Pf6N2E2_895	0.83	-0.7
1,049,013	-				+0.6
1,049,016	+				+0.2
1,049,016	+				-0.2
1,049,016	+				+0.2
1,049,016	+				+0.5
1,049,016	+				+0.5
1,049,016	+				-0.6
1,049,016	+				-0.8
1,049,017	-				+1.5
1,049,017	-				-0.1
1,049,017	-				+1.5
1,049,017	-				+1.0
1,049,017	-				+0.5
1,049,017	-				-1.7
1,049,063	-				-0.1
1,049,076	+				-1.2
1,049,077	-				+0.7
1,049,161	+				+1.5
1,049,161	+				+0.5
1,049,162	-				-0.1
1,049,227	-				+0.4
1,049,358	+		Pf6N2E2_896	0.22	+0.5
1,049,467	+		Pf6N2E2_896	0.33	-1.8
1,049,689	+		Pf6N2E2_896	0.58	+1.5
1,049,690	-		Pf6N2E2_896	0.58	+0.2
1,049,744	+		Pf6N2E2_896	0.64	+1.1
1,049,744	+		Pf6N2E2_896	0.64	-0.3
1,049,786	-		Pf6N2E2_896	0.68	-0.3
1,049,848	-		Pf6N2E2_896	0.75	+0.5