Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_760

Experiment: Nitrate reduction, replicate A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_758 and Pf6N2E2_759 are separated by 8 nucleotidesPf6N2E2_759 and Pf6N2E2_760 are separated by 163 nucleotidesPf6N2E2_760 and Pf6N2E2_761 are separated by 95 nucleotides Pf6N2E2_758 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 867,937 to 869,457 _758 Pf6N2E2_759 - HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217), at 869,466 to 870,275 _759 Pf6N2E2_760 - Na+/H+ antiporter NhaB, at 870,439 to 871,941 _760 Pf6N2E2_761 - Hemolysin-type calcium-binding region, at 872,037 to 873,326 _761 Position (kb) 870 871 872Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 869.508 kb on - strandat 869.718 kb on + strand, within Pf6N2E2_759at 869.719 kb on - strand, within Pf6N2E2_759at 869.719 kb on - strand, within Pf6N2E2_759at 869.788 kb on + strand, within Pf6N2E2_759at 869.788 kb on + strand, within Pf6N2E2_759at 869.789 kb on - strand, within Pf6N2E2_759at 869.789 kb on - strand, within Pf6N2E2_759at 869.895 kb on + strand, within Pf6N2E2_759at 869.895 kb on + strand, within Pf6N2E2_759at 869.895 kb on + strand, within Pf6N2E2_759at 869.895 kb on + strand, within Pf6N2E2_759at 869.895 kb on + strand, within Pf6N2E2_759at 869.896 kb on - strand, within Pf6N2E2_759at 869.896 kb on - strand, within Pf6N2E2_759at 869.896 kb on - strand, within Pf6N2E2_759at 870.018 kb on + strand, within Pf6N2E2_759at 870.258 kb on + strandat 870.258 kb on + strandat 870.335 kb on - strandat 870.335 kb on - strandat 870.335 kb on - strandat 870.434 kb on + strandat 870.435 kb on - strandat 870.435 kb on - strandat 870.435 kb on - strandat 870.435 kb on - strandat 870.435 kb on - strandat 870.440 kb on + strandat 870.440 kb on + strandat 870.440 kb on + strandat 870.441 kb on - strandat 870.449 kb on + strandat 870.450 kb on - strandat 870.450 kb on - strandat 870.450 kb on - strandat 870.462 kb on - strandat 870.492 kb on - strandat 870.522 kb on - strandat 870.693 kb on + strand, within Pf6N2E2_760at 870.698 kb on + strand, within Pf6N2E2_760at 870.698 kb on + strand, within Pf6N2E2_760at 870.698 kb on + strand, within Pf6N2E2_760at 870.698 kb on + strand, within Pf6N2E2_760at 870.698 kb on + strand, within Pf6N2E2_760at 870.698 kb on + strand, within Pf6N2E2_760at 870.698 kb on + strand, within Pf6N2E2_760at 870.698 kb on + strand, within Pf6N2E2_760at 870.698 kb on + strand, within Pf6N2E2_760at 870.699 kb on - strand, within Pf6N2E2_760at 871.023 kb on + strand, within Pf6N2E2_760at 871.024 kb on - strand, within Pf6N2E2_760at 871.024 kb on - strand, within Pf6N2E2_760at 871.085 kb on + strand, within Pf6N2E2_760at 871.085 kb on + strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.106 kb on - strand, within Pf6N2E2_760at 871.336 kb on + strand, within Pf6N2E2_760at 871.337 kb on - strand, within Pf6N2E2_760at 871.446 kb on - strand, within Pf6N2E2_760at 871.454 kb on + strand, within Pf6N2E2_760at 871.454 kb on + strand, within Pf6N2E2_760at 871.454 kb on + strand, within Pf6N2E2_760at 871.454 kb on + strand, within Pf6N2E2_760at 871.455 kb on - strand, within Pf6N2E2_760at 871.455 kb on - strand, within Pf6N2E2_760at 871.455 kb on - strand, within Pf6N2E2_760at 871.619 kb on + strand, within Pf6N2E2_760at 871.619 kb on + strand, within Pf6N2E2_760at 871.619 kb on + strand, within Pf6N2E2_760at 871.620 kb on - strand, within Pf6N2E2_760at 871.620 kb on - strand, within Pf6N2E2_760at 871.682 kb on + strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.683 kb on - strand, within Pf6N2E2_760at 871.761 kb on + strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.762 kb on - strand, within Pf6N2E2_760at 871.880 kb on + strandat 871.880 kb on + strandat 871.881 kb on - strandat 871.881 kb on - strandat 871.881 kb on - strandat 871.881 kb on - strandat 871.908 kb on + strandat 871.908 kb on + strandat 871.955 kb on + strandat 871.993 kb on + strandat 872.008 kb on + strandat 872.008 kb on + strandat 872.012 kb on + strandat 872.012 kb on + strandat 872.012 kb on + strandat 872.012 kb on + strandat 872.120 kb on + strandat 872.214 kb on + strand, within Pf6N2E2_761at 872.215 kb on - strand, within Pf6N2E2_761at 872.406 kb on - strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.606 kb on + strand, within Pf6N2E2_761at 872.607 kb on - strand, within Pf6N2E2_761at 872.607 kb on - strand, within Pf6N2E2_761at 872.607 kb on - strand, within Pf6N2E2_761at 872.646 kb on - strand, within Pf6N2E2_761at 872.646 kb on - strand, within Pf6N2E2_761at 872.756 kb on - strand, within Pf6N2E2_761at 872.796 kb on + strand, within Pf6N2E2_761

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A
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869,508 - +0.1
869,718 + Pf6N2E2_759 0.31 -0.1
869,719 - Pf6N2E2_759 0.31 -0.1
869,719 - Pf6N2E2_759 0.31 +1.3
869,788 + Pf6N2E2_759 0.40 -0.4
869,788 + Pf6N2E2_759 0.40 +1.3
869,789 - Pf6N2E2_759 0.40 -0.0
869,789 - Pf6N2E2_759 0.40 -0.2
869,895 + Pf6N2E2_759 0.53 -0.1
869,895 + Pf6N2E2_759 0.53 -0.3
869,895 + Pf6N2E2_759 0.53 +0.8
869,895 + Pf6N2E2_759 0.53 -0.2
869,895 + Pf6N2E2_759 0.53 +0.6
869,896 - Pf6N2E2_759 0.53 +0.2
869,896 - Pf6N2E2_759 0.53 -0.6
869,896 - Pf6N2E2_759 0.53 +0.1
870,018 + Pf6N2E2_759 0.68 +0.2
870,258 + -0.2
870,258 + -1.2
870,335 - -0.0
870,335 - +0.9
870,335 - -1.2
870,434 + -2.0
870,435 - +0.2
870,435 - +0.2
870,435 - +0.1
870,435 - -0.6
870,435 - +0.6
870,440 + +0.7
870,440 + -0.9
870,440 + +0.4
870,441 - -2.1
870,449 + -0.0
870,450 - -2.6
870,450 - +0.2
870,450 - +0.6
870,462 - -1.1
870,492 - -1.5
870,522 - -2.2
870,693 + Pf6N2E2_760 0.17 -2.4
870,698 + Pf6N2E2_760 0.17 -0.7
870,698 + Pf6N2E2_760 0.17 -1.5
870,698 + Pf6N2E2_760 0.17 -1.0
870,698 + Pf6N2E2_760 0.17 -1.1
870,698 + Pf6N2E2_760 0.17 -2.7
870,698 + Pf6N2E2_760 0.17 -1.1
870,698 + Pf6N2E2_760 0.17 -0.1
870,698 + Pf6N2E2_760 0.17 -2.1
870,698 + Pf6N2E2_760 0.17 -1.9
870,699 - Pf6N2E2_760 0.17 -1.9
871,023 + Pf6N2E2_760 0.39 +1.5
871,024 - Pf6N2E2_760 0.39 -1.4
871,024 - Pf6N2E2_760 0.39 -1.0
871,085 + Pf6N2E2_760 0.43 -1.8
871,085 + Pf6N2E2_760 0.43 -0.7
871,106 - Pf6N2E2_760 0.44 -1.2
871,106 - Pf6N2E2_760 0.44 -1.9
871,106 - Pf6N2E2_760 0.44 +1.5
871,106 - Pf6N2E2_760 0.44 -1.0
871,106 - Pf6N2E2_760 0.44 +1.5
871,106 - Pf6N2E2_760 0.44 -1.3
871,106 - Pf6N2E2_760 0.44 -1.8
871,106 - Pf6N2E2_760 0.44 -2.4
871,106 - Pf6N2E2_760 0.44 -3.1
871,336 + Pf6N2E2_760 0.60 -3.3
871,337 - Pf6N2E2_760 0.60 -1.5
871,446 - Pf6N2E2_760 0.67 -1.3
871,454 + Pf6N2E2_760 0.68 +0.2
871,454 + Pf6N2E2_760 0.68 +0.1
871,454 + Pf6N2E2_760 0.68 -2.8
871,454 + Pf6N2E2_760 0.68 -2.5
871,455 - Pf6N2E2_760 0.68 -0.9
871,455 - Pf6N2E2_760 0.68 -1.7
871,455 - Pf6N2E2_760 0.68 -2.6
871,619 + Pf6N2E2_760 0.79 -2.8
871,619 + Pf6N2E2_760 0.79 -0.4
871,619 + Pf6N2E2_760 0.79 -1.8
871,620 - Pf6N2E2_760 0.79 -1.3
871,620 - Pf6N2E2_760 0.79 +0.9
871,682 + Pf6N2E2_760 0.83 -1.9
871,683 - Pf6N2E2_760 0.83 -2.1
871,683 - Pf6N2E2_760 0.83 -1.7
871,683 - Pf6N2E2_760 0.83 -2.4
871,683 - Pf6N2E2_760 0.83 -0.8
871,683 - Pf6N2E2_760 0.83 -1.2
871,683 - Pf6N2E2_760 0.83 -2.7
871,761 + Pf6N2E2_760 0.88 -2.1
871,762 - Pf6N2E2_760 0.88 -1.9
871,762 - Pf6N2E2_760 0.88 -2.7
871,762 - Pf6N2E2_760 0.88 -2.2
871,762 - Pf6N2E2_760 0.88 -1.4
871,762 - Pf6N2E2_760 0.88 -1.8
871,762 - Pf6N2E2_760 0.88 -3.0
871,880 + -3.1
871,880 + -1.4
871,881 - -0.8
871,881 - +0.5
871,881 - -2.2
871,881 - -1.8
871,908 + -1.2
871,908 + +1.5
871,955 + +4.3
871,993 + -0.1
872,008 + -0.5
872,008 + -1.2
872,012 + -1.5
872,012 + +0.1
872,012 + -1.5
872,012 + -1.5
872,120 + -0.7
872,214 + Pf6N2E2_761 0.14 -0.2
872,215 - Pf6N2E2_761 0.14 +0.3
872,406 - Pf6N2E2_761 0.29 +2.0
872,606 + Pf6N2E2_761 0.44 -0.7
872,606 + Pf6N2E2_761 0.44 -0.1
872,606 + Pf6N2E2_761 0.44 -0.1
872,606 + Pf6N2E2_761 0.44 +0.7
872,606 + Pf6N2E2_761 0.44 -2.6
872,606 + Pf6N2E2_761 0.44 -0.3
872,606 + Pf6N2E2_761 0.44 +2.5
872,607 - Pf6N2E2_761 0.44 +0.6
872,607 - Pf6N2E2_761 0.44 +0.5
872,607 - Pf6N2E2_761 0.44 -0.0
872,646 - Pf6N2E2_761 0.47 +1.5
872,646 - Pf6N2E2_761 0.47 +1.1
872,756 - Pf6N2E2_761 0.56 +0.5
872,796 + Pf6N2E2_761 0.59 +1.5

Or see this region's nucleotide sequence