Experiment: Nitrate reduction, replicate A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_715 and Pf6N2E2_716 are separated by 73 nucleotides Pf6N2E2_716 and Pf6N2E2_717 are separated by 160 nucleotides Pf6N2E2_717 and Pf6N2E2_718 are separated by 155 nucleotides Pf6N2E2_718 and Pf6N2E2_719 are separated by 88 nucleotides
Pf6N2E2_715 - putative membrane protein, at 819,372 to 819,809
_715
Pf6N2E2_716 - Nitric oxide-dependent regulator DnrN or NorA, at 819,883 to 820,557
_716
Pf6N2E2_717 - Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR, at 820,718 to 822,250
_717
Pf6N2E2_718 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 822,406 to 823,053
_718
Pf6N2E2_719 - Molybdenum cofactor biosynthesis protein MoaB, at 823,142 to 823,696
_719
Position (kb) 820
821
822
823 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 819.795 kb on + strand at 819.795 kb on + strand at 819.795 kb on + strand at 819.796 kb on - strand at 819.864 kb on - strand at 819.978 kb on - strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716 at 820.478 kb on + strand, within Pf6N2E2_716 at 820.478 kb on + strand, within Pf6N2E2_716 at 820.478 kb on + strand, within Pf6N2E2_716 at 820.478 kb on + strand, within Pf6N2E2_716 at 820.478 kb on + strand, within Pf6N2E2_716 at 820.479 kb on - strand, within Pf6N2E2_716 at 820.479 kb on - strand, within Pf6N2E2_716 at 820.479 kb on - strand, within Pf6N2E2_716 at 820.491 kb on + strand at 820.491 kb on + strand at 820.714 kb on + strand at 820.714 kb on + strand at 820.805 kb on + strand at 820.806 kb on - strand at 820.994 kb on + strand, within Pf6N2E2_717 at 821.063 kb on + strand, within Pf6N2E2_717 at 821.064 kb on - strand, within Pf6N2E2_717 at 821.064 kb on - strand, within Pf6N2E2_717 at 821.064 kb on - strand, within Pf6N2E2_717 at 821.064 kb on - strand, within Pf6N2E2_717 at 821.064 kb on - strand, within Pf6N2E2_717 at 821.319 kb on + strand, within Pf6N2E2_717 at 821.319 kb on + strand, within Pf6N2E2_717 at 821.319 kb on + strand, within Pf6N2E2_717 at 821.319 kb on + strand, within Pf6N2E2_717 at 821.320 kb on - strand, within Pf6N2E2_717 at 821.554 kb on + strand, within Pf6N2E2_717 at 821.744 kb on + strand, within Pf6N2E2_717 at 821.745 kb on - strand, within Pf6N2E2_717 at 821.745 kb on - strand, within Pf6N2E2_717 at 821.745 kb on - strand, within Pf6N2E2_717 at 822.220 kb on + strand at 822.220 kb on + strand at 822.220 kb on + strand at 822.221 kb on - strand at 822.650 kb on - strand, within Pf6N2E2_718 at 822.732 kb on - strand, within Pf6N2E2_718 at 822.732 kb on - strand, within Pf6N2E2_718 at 822.732 kb on - strand, within Pf6N2E2_718 at 822.782 kb on - strand, within Pf6N2E2_718 at 823.067 kb on + strand at 823.067 kb on + strand at 823.067 kb on + strand at 823.068 kb on - strand at 823.068 kb on - strand at 823.084 kb on - strand at 823.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A remove 819,795 + -0.1 819,795 + -0.3 819,795 + +1.4 819,796 - +2.4 819,864 - +0.1 819,978 - Pf6N2E2_716 0.14 -1.4 820,181 + Pf6N2E2_716 0.44 -0.3 820,181 + Pf6N2E2_716 0.44 +0.4 820,181 + Pf6N2E2_716 0.44 -0.8 820,181 + Pf6N2E2_716 0.44 +0.8 820,182 - Pf6N2E2_716 0.44 -1.3 820,182 - Pf6N2E2_716 0.44 -0.7 820,182 - Pf6N2E2_716 0.44 +0.1 820,182 - Pf6N2E2_716 0.44 +1.4 820,478 + Pf6N2E2_716 0.88 -0.6 820,478 + Pf6N2E2_716 0.88 -1.6 820,478 + Pf6N2E2_716 0.88 -1.6 820,478 + Pf6N2E2_716 0.88 +0.2 820,478 + Pf6N2E2_716 0.88 +0.6 820,479 - Pf6N2E2_716 0.88 +0.1 820,479 - Pf6N2E2_716 0.88 -1.6 820,479 - Pf6N2E2_716 0.88 -0.9 820,491 + -0.4 820,491 + -0.7 820,714 + -0.2 820,714 + +1.4 820,805 + -3.4 820,806 - +1.4 820,994 + Pf6N2E2_717 0.18 -1.2 821,063 + Pf6N2E2_717 0.23 -1.6 821,064 - Pf6N2E2_717 0.23 -0.3 821,064 - Pf6N2E2_717 0.23 -1.0 821,064 - Pf6N2E2_717 0.23 -0.9 821,064 - Pf6N2E2_717 0.23 -0.9 821,064 - Pf6N2E2_717 0.23 -2.0 821,319 + Pf6N2E2_717 0.39 -3.0 821,319 + Pf6N2E2_717 0.39 -0.6 821,319 + Pf6N2E2_717 0.39 -4.0 821,319 + Pf6N2E2_717 0.39 -1.2 821,320 - Pf6N2E2_717 0.39 -0.9 821,554 + Pf6N2E2_717 0.55 -2.8 821,744 + Pf6N2E2_717 0.67 +0.4 821,745 - Pf6N2E2_717 0.67 -2.2 821,745 - Pf6N2E2_717 0.67 -2.2 821,745 - Pf6N2E2_717 0.67 -1.0 822,220 + -1.4 822,220 + -2.7 822,220 + -1.7 822,221 - -3.0 822,650 - Pf6N2E2_718 0.38 -2.3 822,732 - Pf6N2E2_718 0.50 -3.4 822,732 - Pf6N2E2_718 0.50 -3.1 822,732 - Pf6N2E2_718 0.50 -0.7 822,782 - Pf6N2E2_718 0.58 -0.2 823,067 + +0.9 823,067 + +1.4 823,067 + -1.2 823,068 - +1.4 823,068 - +0.4 823,084 - +0.9 823,193 - -0.3
Or see this region's nucleotide sequence