Experiment: Nitrate reduction, replicate A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_714 and Pf6N2E2_715 are separated by 25 nucleotides Pf6N2E2_715 and Pf6N2E2_716 are separated by 73 nucleotides Pf6N2E2_716 and Pf6N2E2_717 are separated by 160 nucleotides
Pf6N2E2_714 - NnrS protein involved in response to NO, at 818,156 to 819,346
_714
Pf6N2E2_715 - putative membrane protein, at 819,372 to 819,809
_715
Pf6N2E2_716 - Nitric oxide-dependent regulator DnrN or NorA, at 819,883 to 820,557
_716
Pf6N2E2_717 - Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR, at 820,718 to 822,250
_717
Position (kb) 819
820
821 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 818.990 kb on + strand, within Pf6N2E2_714 at 819.285 kb on + strand at 819.286 kb on - strand at 819.287 kb on + strand at 819.287 kb on + strand at 819.287 kb on + strand at 819.288 kb on - strand at 819.376 kb on - strand at 819.676 kb on - strand, within Pf6N2E2_715 at 819.676 kb on - strand, within Pf6N2E2_715 at 819.676 kb on - strand, within Pf6N2E2_715 at 819.676 kb on - strand, within Pf6N2E2_715 at 819.690 kb on + strand, within Pf6N2E2_715 at 819.690 kb on + strand, within Pf6N2E2_715 at 819.690 kb on + strand, within Pf6N2E2_715 at 819.691 kb on - strand, within Pf6N2E2_715 at 819.795 kb on + strand at 819.795 kb on + strand at 819.795 kb on + strand at 819.796 kb on - strand at 819.864 kb on - strand at 819.978 kb on - strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.181 kb on + strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716 at 820.182 kb on - strand, within Pf6N2E2_716 at 820.478 kb on + strand, within Pf6N2E2_716 at 820.478 kb on + strand, within Pf6N2E2_716 at 820.478 kb on + strand, within Pf6N2E2_716 at 820.478 kb on + strand, within Pf6N2E2_716 at 820.478 kb on + strand, within Pf6N2E2_716 at 820.479 kb on - strand, within Pf6N2E2_716 at 820.479 kb on - strand, within Pf6N2E2_716 at 820.479 kb on - strand, within Pf6N2E2_716 at 820.491 kb on + strand at 820.491 kb on + strand at 820.714 kb on + strand at 820.714 kb on + strand at 820.805 kb on + strand at 820.806 kb on - strand at 820.994 kb on + strand, within Pf6N2E2_717 at 821.063 kb on + strand, within Pf6N2E2_717 at 821.064 kb on - strand, within Pf6N2E2_717 at 821.064 kb on - strand, within Pf6N2E2_717 at 821.064 kb on - strand, within Pf6N2E2_717 at 821.064 kb on - strand, within Pf6N2E2_717 at 821.064 kb on - strand, within Pf6N2E2_717 at 821.319 kb on + strand, within Pf6N2E2_717 at 821.319 kb on + strand, within Pf6N2E2_717 at 821.319 kb on + strand, within Pf6N2E2_717 at 821.319 kb on + strand, within Pf6N2E2_717 at 821.320 kb on - strand, within Pf6N2E2_717 at 821.554 kb on + strand, within Pf6N2E2_717
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A remove 818,990 + Pf6N2E2_714 0.70 +0.1 819,285 + -0.2 819,286 - -1.2 819,287 + -1.7 819,287 + -0.8 819,287 + -1.4 819,288 - -1.2 819,376 - +0.5 819,676 - Pf6N2E2_715 0.69 +0.5 819,676 - Pf6N2E2_715 0.69 -0.1 819,676 - Pf6N2E2_715 0.69 +0.5 819,676 - Pf6N2E2_715 0.69 +0.4 819,690 + Pf6N2E2_715 0.73 -1.4 819,690 + Pf6N2E2_715 0.73 +0.3 819,690 + Pf6N2E2_715 0.73 +0.3 819,691 - Pf6N2E2_715 0.73 -0.3 819,795 + -0.1 819,795 + -0.3 819,795 + +1.4 819,796 - +2.4 819,864 - +0.1 819,978 - Pf6N2E2_716 0.14 -1.4 820,181 + Pf6N2E2_716 0.44 -0.3 820,181 + Pf6N2E2_716 0.44 +0.4 820,181 + Pf6N2E2_716 0.44 -0.8 820,181 + Pf6N2E2_716 0.44 +0.8 820,182 - Pf6N2E2_716 0.44 -1.3 820,182 - Pf6N2E2_716 0.44 -0.7 820,182 - Pf6N2E2_716 0.44 +0.1 820,182 - Pf6N2E2_716 0.44 +1.4 820,478 + Pf6N2E2_716 0.88 -0.6 820,478 + Pf6N2E2_716 0.88 -1.6 820,478 + Pf6N2E2_716 0.88 -1.6 820,478 + Pf6N2E2_716 0.88 +0.2 820,478 + Pf6N2E2_716 0.88 +0.6 820,479 - Pf6N2E2_716 0.88 +0.1 820,479 - Pf6N2E2_716 0.88 -1.6 820,479 - Pf6N2E2_716 0.88 -0.9 820,491 + -0.4 820,491 + -0.7 820,714 + -0.2 820,714 + +1.4 820,805 + -3.4 820,806 - +1.4 820,994 + Pf6N2E2_717 0.18 -1.2 821,063 + Pf6N2E2_717 0.23 -1.6 821,064 - Pf6N2E2_717 0.23 -0.3 821,064 - Pf6N2E2_717 0.23 -1.0 821,064 - Pf6N2E2_717 0.23 -0.9 821,064 - Pf6N2E2_717 0.23 -0.9 821,064 - Pf6N2E2_717 0.23 -2.0 821,319 + Pf6N2E2_717 0.39 -3.0 821,319 + Pf6N2E2_717 0.39 -0.6 821,319 + Pf6N2E2_717 0.39 -4.0 821,319 + Pf6N2E2_717 0.39 -1.2 821,320 - Pf6N2E2_717 0.39 -0.9 821,554 + Pf6N2E2_717 0.55 -2.8
Or see this region's nucleotide sequence