Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5723

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
6,539,506	+		Pf6N2E2_5722	0.77	-1.4
6,539,532	+		Pf6N2E2_5722	0.79	-1.7
6,539,660	+		Pf6N2E2_5722	0.88	-0.6
6,539,660	+		Pf6N2E2_5722	0.88	-1.1
6,539,661	-		Pf6N2E2_5722	0.88	+1.4
6,539,661	-		Pf6N2E2_5722	0.88	+1.4
6,539,661	-		Pf6N2E2_5722	0.88	+0.9
6,539,661	-		Pf6N2E2_5722	0.88	+1.4
6,539,661	-		Pf6N2E2_5722	0.88	+1.4
6,539,661	-		Pf6N2E2_5722	0.88	+1.4
6,539,664	+		Pf6N2E2_5722	0.88	-0.2
6,539,664	+		Pf6N2E2_5722	0.88	-0.3
6,539,665	-		Pf6N2E2_5722	0.89	+1.4
6,539,749	+				-0.7
6,539,749	+				+0.4
6,539,788	-				-0.2
6,539,855	+				-1.6
6,539,904	+				-1.0
6,539,913	+				-0.2
6,539,913	+				-0.9
6,539,913	+				+0.1
6,539,913	+				+0.4
6,539,914	-				-0.3
6,539,917	+				-0.7
6,539,917	+				+0.3
6,539,966	+				-0.2
6,540,074	+				-0.4
6,540,422	+		Pf6N2E2_5723	0.22	+1.4
6,540,423	-		Pf6N2E2_5723	0.22	+1.4
6,540,423	-		Pf6N2E2_5723	0.22	-2.8
6,540,498	+		Pf6N2E2_5723	0.26	-1.7
6,540,498	+		Pf6N2E2_5723	0.26	-2.1
6,540,498	+		Pf6N2E2_5723	0.26	-3.0
6,540,498	+		Pf6N2E2_5723	0.26	+0.4
6,540,498	+		Pf6N2E2_5723	0.26	+0.4
6,540,498	+		Pf6N2E2_5723	0.26	+1.1
6,540,498	+		Pf6N2E2_5723	0.26	+0.4
6,540,498	+		Pf6N2E2_5723	0.26	-1.6
6,540,498	+		Pf6N2E2_5723	0.26	-1.2
6,540,498	+		Pf6N2E2_5723	0.26	+1.4
6,540,498	+		Pf6N2E2_5723	0.26	-0.6
6,540,498	+		Pf6N2E2_5723	0.26	-0.9
6,540,498	+		Pf6N2E2_5723	0.26	-0.6
6,540,499	-		Pf6N2E2_5723	0.26	+1.4
6,540,499	-		Pf6N2E2_5723	0.26	-0.6
6,540,499	-		Pf6N2E2_5723	0.26	+1.4
6,540,499	-		Pf6N2E2_5723	0.26	+1.4
6,540,499	-		Pf6N2E2_5723	0.26	+1.4
6,540,585	+		Pf6N2E2_5723	0.30	-1.1
6,540,586	-		Pf6N2E2_5723	0.30	-1.7
6,540,586	-		Pf6N2E2_5723	0.30	+2.4
6,540,586	-		Pf6N2E2_5723	0.30	+0.4
6,540,724	-		Pf6N2E2_5723	0.36	+0.4
6,540,845	+		Pf6N2E2_5723	0.41	+1.4
6,540,846	-		Pf6N2E2_5723	0.41	+1.4
6,540,850	+		Pf6N2E2_5723	0.41	+1.4
6,540,851	-		Pf6N2E2_5723	0.41	-1.1
6,540,851	-		Pf6N2E2_5723	0.41	+0.4
6,540,882	+		Pf6N2E2_5723	0.43	-0.7
6,540,883	-		Pf6N2E2_5723	0.43	+1.4
6,540,883	-		Pf6N2E2_5723	0.43	-0.6
6,540,952	+		Pf6N2E2_5723	0.46	-0.1
6,540,953	-		Pf6N2E2_5723	0.46	+1.4
6,540,953	-		Pf6N2E2_5723	0.46	+0.2
6,541,023	+		Pf6N2E2_5723	0.49	+1.4
6,541,023	+		Pf6N2E2_5723	0.49	-1.0
6,541,170	+		Pf6N2E2_5723	0.56	-2.7
6,541,170	+		Pf6N2E2_5723	0.56	+0.4
6,541,170	+		Pf6N2E2_5723	0.56	+1.4
6,541,171	-		Pf6N2E2_5723	0.56	-2.0
6,541,171	-		Pf6N2E2_5723	0.56	-0.7
6,541,171	-		Pf6N2E2_5723	0.56	-1.7
6,541,171	-		Pf6N2E2_5723	0.56	+0.4
6,541,172	+		Pf6N2E2_5723	0.56	-0.7
6,541,172	+		Pf6N2E2_5723	0.56	-0.2
6,541,172	+		Pf6N2E2_5723	0.56	-1.4
6,541,172	+		Pf6N2E2_5723	0.56	-0.6
6,541,173	-		Pf6N2E2_5723	0.56	+1.4
6,541,173	-		Pf6N2E2_5723	0.56	-2.3
6,541,173	-		Pf6N2E2_5723	0.56	+0.4
6,541,173	-		Pf6N2E2_5723	0.56	-1.4
6,541,173	-		Pf6N2E2_5723	0.56	+1.4
6,541,173	-		Pf6N2E2_5723	0.56	+1.4
6,541,173	-		Pf6N2E2_5723	0.56	+1.4
6,541,173	-		Pf6N2E2_5723	0.56	-0.6
6,541,308	+		Pf6N2E2_5723	0.62	-0.6
6,541,309	-		Pf6N2E2_5723	0.62	+1.4
6,541,309	-		Pf6N2E2_5723	0.62	-0.8
6,541,396	-		Pf6N2E2_5723	0.66	-0.4
6,541,696	-		Pf6N2E2_5723	0.79	-2.1
6,541,800	+		Pf6N2E2_5723	0.84	-1.8
6,541,800	+		Pf6N2E2_5723	0.84	-0.7
6,541,801	-		Pf6N2E2_5723	0.84	-0.9
6,541,801	-		Pf6N2E2_5723	0.84	-2.2
6,541,801	-		Pf6N2E2_5723	0.84	-0.9
6,541,923	+		Pf6N2E2_5723	0.89	-0.2
6,542,167	-				-0.8
6,542,167	-				-0.1
6,542,260	+				-1.4
6,542,261	-				-0.4
6,542,285	+				-0.1
6,542,285	+				+0.1
6,542,285	+				+1.4
6,542,285	+				+1.0
6,542,285	+				+1.4
6,542,286	-				+0.3
6,542,286	-				+0.6
6,542,286	-				-1.3
6,542,286	-				+0.2
6,542,286	-				+0.0
6,542,286	-				-0.0
6,542,286	-				+1.2
6,542,336	+				-0.4
6,542,366	+		Pf6N2E2_5724	0.10	+0.8
6,542,366	+		Pf6N2E2_5724	0.10	+1.4
6,542,386	+		Pf6N2E2_5724	0.12	-0.3
6,542,386	+		Pf6N2E2_5724	0.12	+0.1
6,542,386	+		Pf6N2E2_5724	0.12	+1.6
6,542,387	-		Pf6N2E2_5724	0.13	+0.6
6,542,387	-		Pf6N2E2_5724	0.13	+0.1
6,542,387	-		Pf6N2E2_5724	0.13	-0.3
6,542,387	-		Pf6N2E2_5724	0.13	-0.6
6,542,402	+		Pf6N2E2_5724	0.14	-0.2
6,542,402	+		Pf6N2E2_5724	0.14	+0.1
6,542,402	+		Pf6N2E2_5724	0.14	-0.5
6,542,403	-		Pf6N2E2_5724	0.15	+0.3
6,542,483	+		Pf6N2E2_5724	0.24	-0.2
6,542,483	+		Pf6N2E2_5724	0.24	+0.4
6,542,483	+		Pf6N2E2_5724	0.24	+0.2
6,542,483	+		Pf6N2E2_5724	0.24	-0.3
6,542,483	+		Pf6N2E2_5724	0.24	-1.8
6,542,484	-		Pf6N2E2_5724	0.24	-0.3
6,542,484	-		Pf6N2E2_5724	0.24	+0.4
6,542,484	-		Pf6N2E2_5724	0.24	-0.9
6,542,486	+		Pf6N2E2_5724	0.24	-0.3
6,542,486	+		Pf6N2E2_5724	0.24	+1.6
6,542,486	+		Pf6N2E2_5724	0.24	+0.7
6,542,486	+		Pf6N2E2_5724	0.24	-0.6
6,542,487	-		Pf6N2E2_5724	0.25	+0.3
6,542,487	-		Pf6N2E2_5724	0.25	+0.5
6,542,487	-		Pf6N2E2_5724	0.25	-0.6
6,542,487	-		Pf6N2E2_5724	0.25	-1.3
6,542,487	-		Pf6N2E2_5724	0.25	-0.4
6,542,487	-		Pf6N2E2_5724	0.25	+0.3
6,542,487	-		Pf6N2E2_5724	0.25	-1.0
6,542,598	-		Pf6N2E2_5724	0.38	+1.4
6,542,850	-		Pf6N2E2_5724	0.68	-0.1
6,542,999	-		Pf6N2E2_5724	0.86	+1.2
6,543,126	+				+0.1
6,543,126	+				+1.0
6,543,127	-				+0.2