Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5496

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
6,314,138	+				+0.8
6,314,138	+				-0.5
6,314,138	+				+0.3
6,314,139	-				-0.7
6,314,141	+				+0.8
6,314,141	+				+0.6
6,314,141	+				+2.4
6,314,142	-				-1.8
6,314,142	-				-0.1
6,314,142	-				-0.5
6,314,142	-				-0.2
6,314,142	-				+0.7
6,314,142	-				+0.4
6,314,142	-				+0.7
6,314,157	-				+2.4
6,314,169	+				-0.5
6,314,169	+				+1.4
6,314,170	-				+1.4
6,314,230	+				+0.3
6,314,319	+				-0.3
6,314,553	+		Pf6N2E2_5495	0.22	-0.3
6,314,554	-		Pf6N2E2_5495	0.23	-0.2
6,314,554	-		Pf6N2E2_5495	0.23	-0.4
6,314,554	-		Pf6N2E2_5495	0.23	-0.1
6,314,554	-		Pf6N2E2_5495	0.23	-0.9
6,314,554	-		Pf6N2E2_5495	0.23	-0.2
6,314,562	+		Pf6N2E2_5495	0.25	-0.4
6,314,562	+		Pf6N2E2_5495	0.25	-0.1
6,314,563	-		Pf6N2E2_5495	0.25	-0.5
6,314,563	-		Pf6N2E2_5495	0.25	-1.2
6,314,563	-		Pf6N2E2_5495	0.25	+1.4
6,314,635	-		Pf6N2E2_5495	0.44	+0.1
6,314,713	-		Pf6N2E2_5495	0.65	+0.8
6,314,733	+		Pf6N2E2_5495	0.70	-0.1
6,314,738	+		Pf6N2E2_5495	0.72	-0.2
6,314,906	+				+0.0
6,314,907	-				+0.1
6,314,950	+				-0.3
6,314,950	+				+0.3
6,314,950	+				-0.9
6,314,950	+				+0.1
6,314,951	-				-0.3
6,314,952	+				+1.4
6,314,952	+				-0.4
6,314,952	+				+1.4
6,314,952	+				+0.1
6,314,953	-				-0.1
6,314,953	-				+0.7
6,314,953	-				+0.1
6,314,953	-				-0.5
6,314,953	-				-1.0
6,314,972	-				+1.0
6,314,977	+				+0.2
6,314,977	+				-0.5
6,314,977	+				-0.0
6,314,978	-				+0.0
6,314,978	-				-1.4
6,314,978	-				-0.5
6,314,978	-				-1.4
6,315,017	+				-0.2
6,315,018	-				-0.6
6,315,088	+				-0.4
6,315,089	-				-2.4
6,315,089	-				+0.4
6,315,089	-				+0.4
6,315,091	+				-0.7
6,315,091	+				-2.1
6,315,091	+				+0.5
6,315,092	-				-0.7
6,315,092	-				-0.7
6,315,137	+				+0.1
6,315,137	+				+0.2
6,315,137	+				-1.5
6,315,137	+				-0.9
6,315,137	+				+1.4
6,315,137	+				-0.4
6,315,138	-				+1.0
6,315,174	-		Pf6N2E2_5496	0.11	-0.1
6,315,190	+		Pf6N2E2_5496	0.16	-2.3
6,315,264	+		Pf6N2E2_5496	0.36	+0.4
6,315,264	+		Pf6N2E2_5496	0.36	-1.3
6,315,265	-		Pf6N2E2_5496	0.36	-1.8
6,315,265	-		Pf6N2E2_5496	0.36	-1.1
6,315,458	+				-0.4
6,315,458	+				-0.6
6,315,458	+				-0.7
6,315,459	-				+0.4
6,315,561	+				+0.3
6,315,562	-				+0.2
6,315,562	-				-0.3
6,315,562	-				+0.8
6,315,572	+				-0.3
6,315,573	-				-0.8
6,315,728	+		Pf6N2E2_5497	0.43	+0.4
6,315,728	+		Pf6N2E2_5497	0.43	+0.3
6,315,728	+		Pf6N2E2_5497	0.43	-0.2
6,315,729	-		Pf6N2E2_5497	0.43	-0.0
6,315,729	-		Pf6N2E2_5497	0.43	-0.9
6,315,779	+		Pf6N2E2_5497	0.56	+0.6
6,315,779	+		Pf6N2E2_5497	0.56	+0.3
6,315,779	+		Pf6N2E2_5497	0.56	+0.5
6,315,779	+		Pf6N2E2_5497	0.56	+1.0
6,315,780	-		Pf6N2E2_5497	0.57	-0.1
6,315,833	+		Pf6N2E2_5497	0.71	-1.5
6,315,834	-		Pf6N2E2_5497	0.71	+0.2
6,315,834	-		Pf6N2E2_5497	0.71	+0.3
6,315,836	+		Pf6N2E2_5497	0.72	+0.7
6,315,836	+		Pf6N2E2_5497	0.72	-1.5
6,315,836	+		Pf6N2E2_5497	0.72	+0.5
6,315,836	+		Pf6N2E2_5497	0.72	+1.1
6,315,837	-		Pf6N2E2_5497	0.72	-0.9
6,315,837	-		Pf6N2E2_5497	0.72	-0.3
6,315,837	-		Pf6N2E2_5497	0.72	-0.5
6,315,837	-		Pf6N2E2_5497	0.72	-0.7
6,315,981	+				+0.3
6,316,011	-				+0.7
6,316,125	-				-0.1
6,316,155	+				-1.4
6,316,224	+				-0.8
6,316,224	+				-1.0
6,316,224	+				-0.1
6,316,225	-				-0.1
6,316,225	-				+0.4
6,316,225	-				-0.1
6,316,247	-				-0.0
6,316,247	-				-0.1
6,316,275	+				+0.4
6,316,276	-				-0.8
6,316,282	+				-0.4
6,316,282	+				-0.6
6,316,282	+				-0.3
6,316,282	+				-0.8
6,316,283	-				+0.0
6,316,283	-				-0.2
6,316,283	-				-0.3
6,316,283	-				+1.3
6,316,283	-				-0.2
6,316,312	+				+0.5
6,316,312	+				-0.3
6,316,312	+				-0.2
6,316,313	-				-0.9
6,316,313	-				-0.4
6,316,414	+				+0.5
6,316,414	+				+0.4
6,316,415	-		Pf6N2E2_5498	0.10	-0.2
6,316,415	-		Pf6N2E2_5498	0.10	-0.1
6,316,415	-		Pf6N2E2_5498	0.10	-2.3
6,316,415	-		Pf6N2E2_5498	0.10	-0.6
6,316,432	+		Pf6N2E2_5498	0.11	+0.1
6,316,433	-		Pf6N2E2_5498	0.11	-0.1