Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5392

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
6,198,689	+		Pf6N2E2_5391	0.56	+0.1
6,198,689	+		Pf6N2E2_5391	0.56	-0.5
6,198,690	-		Pf6N2E2_5391	0.56	+0.8
6,198,690	-		Pf6N2E2_5391	0.56	-0.2
6,198,690	-		Pf6N2E2_5391	0.56	+0.6
6,198,690	-		Pf6N2E2_5391	0.56	-0.6
6,198,690	-		Pf6N2E2_5391	0.56	-1.8
6,198,690	-		Pf6N2E2_5391	0.56	-0.3
6,198,983	+		Pf6N2E2_5391	0.77	-0.3
6,198,983	+		Pf6N2E2_5391	0.77	+1.4
6,198,983	+		Pf6N2E2_5391	0.77	-0.3
6,198,983	+		Pf6N2E2_5391	0.77	+1.4
6,198,983	+		Pf6N2E2_5391	0.77	-1.4
6,198,983	+		Pf6N2E2_5391	0.77	+0.4
6,198,984	-		Pf6N2E2_5391	0.77	-0.6
6,198,984	-		Pf6N2E2_5391	0.77	-1.1
6,198,984	-		Pf6N2E2_5391	0.77	-0.1
6,198,984	-		Pf6N2E2_5391	0.77	+1.4
6,198,984	-		Pf6N2E2_5391	0.77	-0.7
6,198,984	-		Pf6N2E2_5391	0.77	-0.7
6,199,025	+		Pf6N2E2_5391	0.80	+0.0
6,199,025	+		Pf6N2E2_5391	0.80	-0.6
6,199,025	+		Pf6N2E2_5391	0.80	-0.9
6,199,026	-		Pf6N2E2_5391	0.80	-0.9
6,199,026	-		Pf6N2E2_5391	0.80	+2.3
6,199,026	-		Pf6N2E2_5391	0.80	+1.1
6,199,026	-		Pf6N2E2_5391	0.80	-0.2
6,199,026	-		Pf6N2E2_5391	0.80	-0.5
6,199,026	-		Pf6N2E2_5391	0.80	-1.0
6,199,168	+				+1.6
6,199,175	+				-0.6
6,199,175	+				-0.9
6,199,175	+				-0.0
6,199,175	+				-0.2
6,199,175	+				-0.2
6,199,175	+				-0.6
6,199,175	+				-0.4
6,199,176	-				-0.9
6,199,176	-				-0.6
6,199,176	-				+1.1
6,199,176	-				+0.6
6,199,176	-				+1.4
6,199,205	+				-0.9
6,199,205	+				+0.7
6,199,205	+				-0.6
6,199,205	+				-0.6
6,199,206	-				-0.1
6,199,206	-				-0.1
6,199,332	-				+0.3
6,199,347	-				+0.4
6,199,347	-				+0.2
6,199,347	-				+0.1
6,199,347	-				-0.1
6,199,347	-				-0.8
6,199,353	+				-0.4
6,199,353	+				+0.2
6,199,354	-				+0.5
6,199,354	-				+2.4
6,199,354	-				+1.0
6,199,435	+				-0.4
6,199,435	+				+0.4
6,199,443	+				+0.1
6,199,443	+				-0.8
6,199,444	-				-1.0
6,199,469	-				-1.2
6,199,755	+		Pf6N2E2_5392	0.59	-0.2
6,199,844	+		Pf6N2E2_5392	0.78	-3.4
6,199,844	+		Pf6N2E2_5392	0.78	-1.4
6,199,844	+		Pf6N2E2_5392	0.78	+1.4
6,199,845	-		Pf6N2E2_5392	0.78	-1.0
6,199,845	-		Pf6N2E2_5392	0.78	-1.9
6,200,533	+		Pf6N2E2_5394	0.75	-2.5
6,200,533	+		Pf6N2E2_5394	0.75	-3.1
6,200,534	-		Pf6N2E2_5394	0.76	-2.6
6,200,534	-		Pf6N2E2_5394	0.76	-1.4
6,200,641	+				+1.4
6,200,641	+				+0.0
6,200,642	-				+0.4
6,200,642	-				+1.1
6,200,719	+				-0.6
6,200,719	+				+1.1
6,200,719	+				+1.4
6,200,719	+				-0.9
6,200,719	+				+0.6
6,200,720	-				-0.6
6,200,720	-				+2.2
6,200,720	-				-0.2
6,200,720	-				-0.5
6,200,720	-				+0.4
6,200,720	-				+0.4
6,200,832	+				+1.9