Experiment: Nitrate reduction, replicate A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5257 and Pf6N2E2_5258 are separated by 9 nucleotides Pf6N2E2_5258 and Pf6N2E2_5259 are separated by 132 nucleotides
Pf6N2E2_5257 - Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4), at 6,051,166 to 6,052,083
_5257
Pf6N2E2_5258 - Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25), at 6,052,093 to 6,053,991
_5258
Pf6N2E2_5259 - FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 6,054,124 to 6,055,032
_5259
Position (kb)
6052
6053
6054 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6051.105 kb on + strand at 6051.105 kb on + strand at 6051.105 kb on + strand at 6051.105 kb on + strand at 6051.106 kb on - strand at 6051.143 kb on + strand at 6051.144 kb on - strand at 6051.144 kb on - strand at 6051.161 kb on + strand at 6051.262 kb on + strand, within Pf6N2E2_5257 at 6051.262 kb on + strand, within Pf6N2E2_5257 at 6051.262 kb on + strand, within Pf6N2E2_5257 at 6051.262 kb on + strand, within Pf6N2E2_5257 at 6051.263 kb on - strand, within Pf6N2E2_5257 at 6051.263 kb on - strand, within Pf6N2E2_5257 at 6051.379 kb on + strand, within Pf6N2E2_5257 at 6051.379 kb on + strand, within Pf6N2E2_5257 at 6051.379 kb on + strand, within Pf6N2E2_5257 at 6051.380 kb on - strand, within Pf6N2E2_5257 at 6051.380 kb on - strand, within Pf6N2E2_5257 at 6051.538 kb on + strand, within Pf6N2E2_5257 at 6051.538 kb on + strand, within Pf6N2E2_5257 at 6051.538 kb on + strand, within Pf6N2E2_5257 at 6051.538 kb on + strand, within Pf6N2E2_5257 at 6051.538 kb on + strand, within Pf6N2E2_5257 at 6051.538 kb on + strand, within Pf6N2E2_5257 at 6051.538 kb on + strand, within Pf6N2E2_5257 at 6051.538 kb on + strand, within Pf6N2E2_5257 at 6051.539 kb on - strand, within Pf6N2E2_5257 at 6051.539 kb on - strand, within Pf6N2E2_5257 at 6051.607 kb on + strand, within Pf6N2E2_5257 at 6051.608 kb on - strand, within Pf6N2E2_5257 at 6051.673 kb on + strand, within Pf6N2E2_5257 at 6051.673 kb on + strand, within Pf6N2E2_5257 at 6051.673 kb on + strand, within Pf6N2E2_5257 at 6051.751 kb on + strand, within Pf6N2E2_5257 at 6051.751 kb on + strand, within Pf6N2E2_5257 at 6051.752 kb on - strand, within Pf6N2E2_5257 at 6051.752 kb on - strand, within Pf6N2E2_5257 at 6051.752 kb on - strand, within Pf6N2E2_5257 at 6051.757 kb on + strand, within Pf6N2E2_5257 at 6051.758 kb on - strand, within Pf6N2E2_5257 at 6051.758 kb on - strand, within Pf6N2E2_5257 at 6051.758 kb on - strand, within Pf6N2E2_5257 at 6051.788 kb on - strand, within Pf6N2E2_5257 at 6052.075 kb on + strand at 6052.076 kb on - strand at 6052.076 kb on - strand at 6052.081 kb on + strand at 6052.135 kb on + strand at 6052.155 kb on + strand at 6052.185 kb on + strand at 6052.246 kb on + strand at 6052.246 kb on + strand at 6052.246 kb on + strand at 6052.246 kb on + strand at 6052.246 kb on + strand at 6052.246 kb on + strand at 6052.246 kb on + strand at 6052.247 kb on - strand at 6052.385 kb on - strand, within Pf6N2E2_5258 at 6052.441 kb on + strand, within Pf6N2E2_5258 at 6052.441 kb on + strand, within Pf6N2E2_5258 at 6052.441 kb on + strand, within Pf6N2E2_5258 at 6052.442 kb on - strand, within Pf6N2E2_5258 at 6052.442 kb on - strand, within Pf6N2E2_5258 at 6052.642 kb on + strand, within Pf6N2E2_5258 at 6052.642 kb on + strand, within Pf6N2E2_5258 at 6052.810 kb on - strand, within Pf6N2E2_5258 at 6052.810 kb on - strand, within Pf6N2E2_5258 at 6052.840 kb on + strand, within Pf6N2E2_5258 at 6052.841 kb on - strand, within Pf6N2E2_5258 at 6053.149 kb on + strand, within Pf6N2E2_5258 at 6053.149 kb on + strand, within Pf6N2E2_5258 at 6053.149 kb on + strand, within Pf6N2E2_5258 at 6053.173 kb on + strand, within Pf6N2E2_5258 at 6053.174 kb on - strand, within Pf6N2E2_5258 at 6053.174 kb on - strand, within Pf6N2E2_5258 at 6053.647 kb on - strand, within Pf6N2E2_5258 at 6053.791 kb on + strand, within Pf6N2E2_5258 at 6053.791 kb on + strand, within Pf6N2E2_5258 at 6053.792 kb on - strand, within Pf6N2E2_5258 at 6053.842 kb on + strand at 6053.842 kb on + strand at 6053.843 kb on - strand at 6053.843 kb on - strand at 6053.843 kb on - strand at 6053.843 kb on - strand at 6053.884 kb on + strand at 6053.885 kb on - strand at 6053.988 kb on - strand at 6053.989 kb on + strand at 6053.989 kb on + strand at 6053.989 kb on + strand at 6053.989 kb on + strand at 6053.989 kb on + strand at 6053.989 kb on + strand at 6053.989 kb on + strand at 6053.989 kb on + strand at 6053.989 kb on + strand at 6053.989 kb on + strand at 6053.989 kb on + strand at 6053.989 kb on + strand at 6053.990 kb on - strand at 6053.990 kb on - strand at 6053.990 kb on - strand at 6053.990 kb on - strand at 6053.990 kb on - strand at 6053.990 kb on - strand at 6054.006 kb on - strand at 6054.030 kb on + strand at 6054.030 kb on + strand at 6054.031 kb on - strand at 6054.031 kb on - strand at 6054.031 kb on - strand at 6054.114 kb on + strand at 6054.114 kb on + strand at 6054.132 kb on + strand at 6054.132 kb on + strand at 6054.132 kb on + strand at 6054.141 kb on - strand at 6054.236 kb on + strand, within Pf6N2E2_5259 at 6054.237 kb on - strand, within Pf6N2E2_5259 at 6054.237 kb on - strand, within Pf6N2E2_5259 at 6054.590 kb on + strand, within Pf6N2E2_5259 at 6054.590 kb on + strand, within Pf6N2E2_5259 at 6054.590 kb on + strand, within Pf6N2E2_5259 at 6054.590 kb on + strand, within Pf6N2E2_5259 at 6054.602 kb on + strand, within Pf6N2E2_5259 at 6054.602 kb on + strand, within Pf6N2E2_5259 at 6054.716 kb on + strand, within Pf6N2E2_5259 at 6054.716 kb on + strand, within Pf6N2E2_5259 at 6054.717 kb on - strand, within Pf6N2E2_5259 at 6054.717 kb on - strand, within Pf6N2E2_5259 at 6054.717 kb on - strand, within Pf6N2E2_5259 at 6054.768 kb on - strand, within Pf6N2E2_5259
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A remove 6,051,105 + +0.7 6,051,105 + +0.0 6,051,105 + -0.4 6,051,105 + -0.6 6,051,106 - -2.3 6,051,143 + -0.2 6,051,144 - -1.8 6,051,144 - -0.8 6,051,161 + +1.0 6,051,262 + Pf6N2E2_5257 0.10 -1.2 6,051,262 + Pf6N2E2_5257 0.10 -1.7 6,051,262 + Pf6N2E2_5257 0.10 -1.0 6,051,262 + Pf6N2E2_5257 0.10 -0.6 6,051,263 - Pf6N2E2_5257 0.11 -1.4 6,051,263 - Pf6N2E2_5257 0.11 -0.7 6,051,379 + Pf6N2E2_5257 0.23 -2.9 6,051,379 + Pf6N2E2_5257 0.23 -1.2 6,051,379 + Pf6N2E2_5257 0.23 -0.9 6,051,380 - Pf6N2E2_5257 0.23 -1.8 6,051,380 - Pf6N2E2_5257 0.23 -1.2 6,051,538 + Pf6N2E2_5257 0.41 -2.5 6,051,538 + Pf6N2E2_5257 0.41 -3.0 6,051,538 + Pf6N2E2_5257 0.41 -1.3 6,051,538 + Pf6N2E2_5257 0.41 -1.3 6,051,538 + Pf6N2E2_5257 0.41 -1.7 6,051,538 + Pf6N2E2_5257 0.41 -0.9 6,051,538 + Pf6N2E2_5257 0.41 +0.5 6,051,538 + Pf6N2E2_5257 0.41 -2.7 6,051,539 - Pf6N2E2_5257 0.41 -1.1 6,051,539 - Pf6N2E2_5257 0.41 +0.9 6,051,607 + Pf6N2E2_5257 0.48 +1.4 6,051,608 - Pf6N2E2_5257 0.48 -0.2 6,051,673 + Pf6N2E2_5257 0.55 -1.9 6,051,673 + Pf6N2E2_5257 0.55 +0.8 6,051,673 + Pf6N2E2_5257 0.55 -1.5 6,051,751 + Pf6N2E2_5257 0.64 -1.6 6,051,751 + Pf6N2E2_5257 0.64 -0.3 6,051,752 - Pf6N2E2_5257 0.64 +0.1 6,051,752 - Pf6N2E2_5257 0.64 +0.4 6,051,752 - Pf6N2E2_5257 0.64 -0.4 6,051,757 + Pf6N2E2_5257 0.64 -1.9 6,051,758 - Pf6N2E2_5257 0.64 -1.0 6,051,758 - Pf6N2E2_5257 0.64 -2.0 6,051,758 - Pf6N2E2_5257 0.64 -1.2 6,051,788 - Pf6N2E2_5257 0.68 -1.7 6,052,075 + -2.9 6,052,076 - +1.4 6,052,076 - -0.8 6,052,081 + +2.0 6,052,135 + -1.6 6,052,155 + +0.4 6,052,185 + -0.2 6,052,246 + -2.0 6,052,246 + -1.7 6,052,246 + -2.7 6,052,246 + -1.4 6,052,246 + -3.3 6,052,246 + -1.9 6,052,246 + -1.1 6,052,247 - -1.6 6,052,385 - Pf6N2E2_5258 0.15 -1.5 6,052,441 + Pf6N2E2_5258 0.18 -2.2 6,052,441 + Pf6N2E2_5258 0.18 -1.5 6,052,441 + Pf6N2E2_5258 0.18 -0.7 6,052,442 - Pf6N2E2_5258 0.18 -2.0 6,052,442 - Pf6N2E2_5258 0.18 -1.3 6,052,642 + Pf6N2E2_5258 0.29 -1.6 6,052,642 + Pf6N2E2_5258 0.29 +1.4 6,052,810 - Pf6N2E2_5258 0.38 -2.3 6,052,810 - Pf6N2E2_5258 0.38 -1.6 6,052,840 + Pf6N2E2_5258 0.39 -1.1 6,052,841 - Pf6N2E2_5258 0.39 -2.8 6,053,149 + Pf6N2E2_5258 0.56 -1.6 6,053,149 + Pf6N2E2_5258 0.56 -1.8 6,053,149 + Pf6N2E2_5258 0.56 -1.4 6,053,173 + Pf6N2E2_5258 0.57 -0.3 6,053,174 - Pf6N2E2_5258 0.57 -1.2 6,053,174 - Pf6N2E2_5258 0.57 -0.7 6,053,647 - Pf6N2E2_5258 0.82 -1.3 6,053,791 + Pf6N2E2_5258 0.89 -1.1 6,053,791 + Pf6N2E2_5258 0.89 -1.1 6,053,792 - Pf6N2E2_5258 0.89 +1.4 6,053,842 + -1.2 6,053,842 + -2.1 6,053,843 - -0.1 6,053,843 - +1.4 6,053,843 - -1.8 6,053,843 - -0.8 6,053,884 + -2.5 6,053,885 - -0.3 6,053,988 - -0.3 6,053,989 + -0.9 6,053,989 + -0.0 6,053,989 + +1.2 6,053,989 + +0.6 6,053,989 + +0.6 6,053,989 + -0.7 6,053,989 + +1.3 6,053,989 + +0.3 6,053,989 + -0.1 6,053,989 + +2.4 6,053,989 + +1.4 6,053,989 + -0.1 6,053,990 - +1.4 6,053,990 - +0.6 6,053,990 - +0.1 6,053,990 - +0.1 6,053,990 - -0.2 6,053,990 - +1.0 6,054,006 - -0.4 6,054,030 + -0.6 6,054,030 + +0.8 6,054,031 - -1.8 6,054,031 - +0.3 6,054,031 - -0.2 6,054,114 + +0.0 6,054,114 + -0.2 6,054,132 + +1.4 6,054,132 + +0.1 6,054,132 + -0.6 6,054,141 - +2.4 6,054,236 + Pf6N2E2_5259 0.12 -0.2 6,054,237 - Pf6N2E2_5259 0.12 +0.0 6,054,237 - Pf6N2E2_5259 0.12 -0.4 6,054,590 + Pf6N2E2_5259 0.51 +0.6 6,054,590 + Pf6N2E2_5259 0.51 -0.1 6,054,590 + Pf6N2E2_5259 0.51 -1.2 6,054,590 + Pf6N2E2_5259 0.51 +0.0 6,054,602 + Pf6N2E2_5259 0.53 -0.4 6,054,602 + Pf6N2E2_5259 0.53 -1.6 6,054,716 + Pf6N2E2_5259 0.65 -0.3 6,054,716 + Pf6N2E2_5259 0.65 -0.6 6,054,717 - Pf6N2E2_5259 0.65 +0.4 6,054,717 - Pf6N2E2_5259 0.65 -0.1 6,054,717 - Pf6N2E2_5259 0.65 -0.2 6,054,768 - Pf6N2E2_5259 0.71 +0.2
Or see this region's nucleotide sequence