Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5177

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
5,964,662	+		Pf6N2E2_5175	0.81	-1.4
5,964,663	-		Pf6N2E2_5175	0.81	+1.4
5,964,737	+		Pf6N2E2_5175	0.85	+1.4
5,964,738	-		Pf6N2E2_5175	0.85	+1.4
5,964,761	+		Pf6N2E2_5175	0.87	-2.1
5,964,761	+		Pf6N2E2_5175	0.87	+1.4
5,964,761	+		Pf6N2E2_5175	0.87	+1.4
5,964,761	+		Pf6N2E2_5175	0.87	-2.1
5,964,761	+		Pf6N2E2_5175	0.87	+1.4
5,964,762	-		Pf6N2E2_5175	0.87	-0.6
5,964,762	-		Pf6N2E2_5175	0.87	-2.3
5,964,803	+		Pf6N2E2_5175	0.89	-0.2
5,964,961	+				-0.6
5,964,961	+				-2.8
5,964,985	+				-3.1
5,964,985	+				-0.9
5,964,985	+				-2.1
5,964,986	-				-0.9
5,964,989	+				+1.4
5,964,989	+				-3.2
5,964,989	+				-2.1
5,964,989	+				-2.9
5,964,989	+				-1.2
5,964,990	-				+0.4
5,964,990	-				-1.5
5,964,990	-				+1.4
5,964,990	-				-1.6
5,965,005	+				-1.4
5,965,005	+				-2.8
5,965,006	-				-1.6
5,965,006	-				+1.4
5,965,006	-				+0.4
5,965,006	-				+0.4
5,965,052	+		Pf6N2E2_5176	0.12	+1.4
5,965,052	+		Pf6N2E2_5176	0.12	+0.4
5,965,052	+		Pf6N2E2_5176	0.12	-0.6
5,965,052	+		Pf6N2E2_5176	0.12	-1.9
5,965,052	+		Pf6N2E2_5176	0.12	+0.4
5,965,075	+		Pf6N2E2_5176	0.16	-1.9
5,965,075	+		Pf6N2E2_5176	0.16	-1.2
5,965,075	+		Pf6N2E2_5176	0.16	-0.2
5,965,076	-		Pf6N2E2_5176	0.17	+0.4
5,965,076	-		Pf6N2E2_5176	0.17	-0.9
5,965,076	-		Pf6N2E2_5176	0.17	-0.9
5,965,076	-		Pf6N2E2_5176	0.17	-1.8
5,965,076	-		Pf6N2E2_5176	0.17	-1.6
5,965,302	+		Pf6N2E2_5176	0.63	+0.4
5,965,303	-		Pf6N2E2_5176	0.63	-0.9
5,965,303	-		Pf6N2E2_5176	0.63	-2.3
5,965,303	-		Pf6N2E2_5176	0.63	-2.1
5,965,303	-		Pf6N2E2_5176	0.63	-0.2
5,965,305	+		Pf6N2E2_5176	0.63	-1.3
5,965,305	+		Pf6N2E2_5176	0.63	+0.4
5,965,312	-		Pf6N2E2_5176	0.65	-2.3
5,965,316	-		Pf6N2E2_5176	0.65	-1.2
5,965,316	-		Pf6N2E2_5176	0.65	-3.3
5,965,316	-		Pf6N2E2_5176	0.65	-0.2
5,965,351	+		Pf6N2E2_5176	0.73	-2.3
5,965,351	+		Pf6N2E2_5176	0.73	-0.6
5,965,351	+		Pf6N2E2_5176	0.73	-2.2
5,965,351	+		Pf6N2E2_5176	0.73	-2.9
5,965,351	+		Pf6N2E2_5176	0.73	+1.4
5,965,352	-		Pf6N2E2_5176	0.73	-1.8
5,965,352	-		Pf6N2E2_5176	0.73	-0.6
5,965,352	-		Pf6N2E2_5176	0.73	-0.6
5,965,353	+		Pf6N2E2_5176	0.73	-1.8
5,965,472	+				+0.8
5,965,472	+				-2.9
5,965,472	+				+1.4
5,965,472	+				-1.8
5,965,473	-				-3.8
5,965,473	-				-3.0
5,965,473	-				-4.3
5,965,483	+				-1.8
5,965,484	-				+1.4
5,965,484	-				-4.0
5,965,493	+				-3.0
5,965,543	+				-2.1
5,965,867	+		Pf6N2E2_5177	0.33	-0.6
5,965,867	+		Pf6N2E2_5177	0.33	-2.6
5,965,867	+		Pf6N2E2_5177	0.33	-3.8
5,965,867	+		Pf6N2E2_5177	0.33	-3.0
5,965,867	+		Pf6N2E2_5177	0.33	-3.7
5,965,868	-		Pf6N2E2_5177	0.33	-0.8
5,965,988	-		Pf6N2E2_5177	0.45	-1.4
5,965,988	-		Pf6N2E2_5177	0.45	-2.2
5,965,988	-		Pf6N2E2_5177	0.45	-1.2
5,966,030	-		Pf6N2E2_5177	0.49	-3.5
5,966,055	+		Pf6N2E2_5177	0.52	-2.7
5,966,182	+		Pf6N2E2_5177	0.64	-2.5
5,966,200	+		Pf6N2E2_5177	0.66	-1.1
5,966,200	+		Pf6N2E2_5177	0.66	-3.2
5,966,200	+		Pf6N2E2_5177	0.66	-3.6
5,966,200	+		Pf6N2E2_5177	0.66	-2.8
5,966,201	-		Pf6N2E2_5177	0.66	-4.5
5,966,245	+		Pf6N2E2_5177	0.70	-3.5
5,966,245	+		Pf6N2E2_5177	0.70	-2.4
5,966,245	+		Pf6N2E2_5177	0.70	-3.0
5,966,245	+		Pf6N2E2_5177	0.70	-4.1
5,966,245	+		Pf6N2E2_5177	0.70	-3.0
5,966,245	+		Pf6N2E2_5177	0.70	-2.5
5,966,245	+		Pf6N2E2_5177	0.70	-1.6
5,966,245	+		Pf6N2E2_5177	0.70	-4.8
5,966,246	-		Pf6N2E2_5177	0.70	+0.4
5,966,246	-		Pf6N2E2_5177	0.70	-3.1
5,966,246	-		Pf6N2E2_5177	0.70	-4.0
5,966,272	+		Pf6N2E2_5177	0.73	+0.5
5,966,272	+		Pf6N2E2_5177	0.73	-2.8
5,966,273	-		Pf6N2E2_5177	0.73	+0.1
5,966,273	-		Pf6N2E2_5177	0.73	-1.6
5,966,273	-		Pf6N2E2_5177	0.73	+0.4
5,966,305	+		Pf6N2E2_5177	0.76	-2.7
5,966,386	+		Pf6N2E2_5177	0.84	-2.3
5,966,545	+				-1.4
5,966,545	+				-0.6
5,966,545	+				-1.3
5,966,546	-				-1.6
5,966,546	-				-1.0
5,966,546	-				-2.3
5,966,546	-				-1.6
5,966,546	-				-1.5
5,966,546	-				-0.9
5,966,615	+				+0.0
5,966,616	-				-0.4
5,966,685	+				+0.4
5,966,686	-				-0.5
5,966,686	-				-2.5
5,966,818	-		Pf6N2E2_5178	0.15	-0.2
5,967,140	-		Pf6N2E2_5178	0.53	+0.5
5,967,143	+		Pf6N2E2_5178	0.53	+0.6
5,967,144	-		Pf6N2E2_5178	0.53	+0.7
5,967,279	-		Pf6N2E2_5178	0.69	-0.6
5,967,362	+		Pf6N2E2_5178	0.79	+0.1
5,967,512	+				+1.4
5,967,513	-				-0.2