Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5175

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
5,962,293	-		Pf6N2E2_5173	0.56	-2.0
5,962,356	+		Pf6N2E2_5173	0.75	-1.4
5,962,356	+		Pf6N2E2_5173	0.75	-0.4
5,962,357	-		Pf6N2E2_5173	0.76	-0.5
5,962,357	-		Pf6N2E2_5173	0.76	-1.4
5,962,357	-		Pf6N2E2_5173	0.76	-0.9
5,962,357	-		Pf6N2E2_5173	0.76	+1.4
5,962,542	+		Pf6N2E2_5174	0.24	+0.2
5,962,543	-		Pf6N2E2_5174	0.24	-0.8
5,962,602	+		Pf6N2E2_5174	0.38	+0.9
5,962,603	-		Pf6N2E2_5174	0.38	-1.8
5,962,603	-		Pf6N2E2_5174	0.38	-0.2
5,962,795	+		Pf6N2E2_5174	0.84	+0.7
5,962,916	+				-1.2
5,962,946	+				+0.8
5,962,947	-				-4.1
5,962,947	-				-2.5
5,962,964	+				-1.9
5,962,964	+				+1.4
5,962,964	+				-0.2
5,962,965	-				-4.2
5,963,015	-				+1.4
5,963,078	+				-3.0
5,963,079	-				-1.2
5,963,079	-				-2.3
5,963,079	-				+1.4
5,963,142	+				+1.1
5,963,142	+				+2.4
5,963,143	-				-2.2
5,963,165	+				+0.8
5,963,165	+				+1.4
5,963,165	+				+1.6
5,963,166	-				-0.2
5,963,203	+				+1.4
5,963,203	+				+0.3
5,963,203	+				+1.7
5,963,203	+				+1.1
5,963,203	+				-0.1
5,963,203	+				+1.9
5,963,203	+				+1.9
5,963,203	+				-0.0
5,963,204	-				-1.4
5,963,209	+				+1.1
5,963,209	+				+1.5
5,963,209	+				+1.7
5,963,209	+				+0.4
5,963,209	+				+1.3
5,963,209	+				+1.4
5,963,209	+				+2.3
5,963,209	+				+0.4
5,963,210	-				-3.5
5,963,210	-				-1.2
5,963,212	+				+1.1
5,963,212	+				-0.2
5,963,212	+				+1.0
5,963,212	+				-1.8
5,963,213	-				-1.6
5,963,213	-				-1.2
5,963,213	-				-1.6
5,963,213	-				-2.3
5,963,278	-				-1.2
5,963,278	-				+1.4
5,963,327	+				-1.4
5,963,327	+				-0.6
5,963,327	+				+1.4
5,963,327	+				-0.6
5,963,327	+				+0.4
5,963,327	+				-0.2
5,963,327	+				-0.2
5,963,328	-				+0.2
5,963,328	-				-2.8
5,963,328	-				-1.4
5,963,328	-				+1.4
5,963,329	+				-0.2
5,963,329	+				-1.1
5,963,329	+				-0.2
5,963,329	+				+0.4
5,963,330	-				-3.2
5,963,333	+				+0.4
5,963,366	+				-0.6
5,963,366	+				-0.9
5,963,366	+				-0.2
5,963,367	-				-1.9
5,963,367	-				-2.1
5,963,367	-				-0.9
5,963,367	-				-0.2
5,963,367	-				-1.4
5,963,434	+		Pf6N2E2_5175	0.10	-1.2
5,963,434	+		Pf6N2E2_5175	0.10	-1.4
5,963,434	+		Pf6N2E2_5175	0.10	-0.6
5,963,478	+		Pf6N2E2_5175	0.13	-0.2
5,963,479	-		Pf6N2E2_5175	0.13	+1.4
5,963,534	+		Pf6N2E2_5175	0.16	-1.2
5,963,535	-		Pf6N2E2_5175	0.16	-3.8
5,963,535	-		Pf6N2E2_5175	0.16	+0.4
5,963,535	-		Pf6N2E2_5175	0.16	-2.4
5,963,705	+		Pf6N2E2_5175	0.26	-0.9
5,963,706	-		Pf6N2E2_5175	0.26	-2.6
5,963,706	-		Pf6N2E2_5175	0.26	-2.8
5,963,706	-		Pf6N2E2_5175	0.26	+1.4
5,963,782	-		Pf6N2E2_5175	0.30	-2.7
5,963,786	+		Pf6N2E2_5175	0.30	-2.2
5,963,786	+		Pf6N2E2_5175	0.30	+1.4
5,963,786	+		Pf6N2E2_5175	0.30	+1.4
5,963,787	-		Pf6N2E2_5175	0.31	-1.8
5,963,787	-		Pf6N2E2_5175	0.31	-2.2
5,963,787	-		Pf6N2E2_5175	0.31	-2.6
5,963,787	-		Pf6N2E2_5175	0.31	-1.8
5,963,819	+		Pf6N2E2_5175	0.32	-1.2
5,963,819	+		Pf6N2E2_5175	0.32	+1.4
5,963,820	-		Pf6N2E2_5175	0.32	-0.2
5,963,900	+		Pf6N2E2_5175	0.37	-0.9
5,963,900	+		Pf6N2E2_5175	0.37	+0.4
5,963,900	+		Pf6N2E2_5175	0.37	-2.5
5,963,983	+		Pf6N2E2_5175	0.42	+1.4
5,963,984	-		Pf6N2E2_5175	0.42	+0.4
5,964,034	+		Pf6N2E2_5175	0.45	-2.8
5,964,035	-		Pf6N2E2_5175	0.45	+1.4
5,964,035	-		Pf6N2E2_5175	0.45	-0.3
5,964,056	+		Pf6N2E2_5175	0.46	+0.4
5,964,056	+		Pf6N2E2_5175	0.46	-1.4
5,964,057	-		Pf6N2E2_5175	0.46	-2.2
5,964,237	+		Pf6N2E2_5175	0.56	-0.6
5,964,238	-		Pf6N2E2_5175	0.57	-2.1
5,964,292	+		Pf6N2E2_5175	0.60	-1.8
5,964,292	+		Pf6N2E2_5175	0.60	-0.9
5,964,293	-		Pf6N2E2_5175	0.60	-1.8
5,964,363	-		Pf6N2E2_5175	0.64	-0.2
5,964,363	-		Pf6N2E2_5175	0.64	-1.6
5,964,485	+		Pf6N2E2_5175	0.71	-1.4
5,964,485	+		Pf6N2E2_5175	0.71	-2.7
5,964,486	-		Pf6N2E2_5175	0.71	-0.2
5,964,486	-		Pf6N2E2_5175	0.71	+0.4
5,964,488	+		Pf6N2E2_5175	0.71	+1.4
5,964,488	+		Pf6N2E2_5175	0.71	+1.4
5,964,488	+		Pf6N2E2_5175	0.71	+1.4
5,964,488	+		Pf6N2E2_5175	0.71	-0.6
5,964,488	+		Pf6N2E2_5175	0.71	-1.2
5,964,488	+		Pf6N2E2_5175	0.71	-0.6
5,964,489	-		Pf6N2E2_5175	0.71	-2.9
5,964,489	-		Pf6N2E2_5175	0.71	+0.4
5,964,489	-		Pf6N2E2_5175	0.71	-0.9
5,964,489	-		Pf6N2E2_5175	0.71	-2.3
5,964,662	+		Pf6N2E2_5175	0.81	-1.4
5,964,663	-		Pf6N2E2_5175	0.81	+1.4
5,964,737	+		Pf6N2E2_5175	0.85	+1.4
5,964,738	-		Pf6N2E2_5175	0.85	+1.4
5,964,761	+		Pf6N2E2_5175	0.87	-2.1
5,964,761	+		Pf6N2E2_5175	0.87	+1.4
5,964,761	+		Pf6N2E2_5175	0.87	+1.4
5,964,761	+		Pf6N2E2_5175	0.87	-2.1
5,964,761	+		Pf6N2E2_5175	0.87	+1.4
5,964,762	-		Pf6N2E2_5175	0.87	-0.6
5,964,762	-		Pf6N2E2_5175	0.87	-2.3
5,964,803	+		Pf6N2E2_5175	0.89	-0.2
5,964,961	+				-0.6
5,964,961	+				-2.8
5,964,985	+				-3.1
5,964,985	+				-0.9
5,964,985	+				-2.1
5,964,986	-				-0.9
5,964,989	+				+1.4
5,964,989	+				-3.2
5,964,989	+				-2.1
5,964,989	+				-2.9
5,964,989	+				-1.2
5,964,990	-				+0.4
5,964,990	-				-1.5
5,964,990	-				+1.4
5,964,990	-				-1.6
5,965,005	+				-1.4
5,965,005	+				-2.8
5,965,006	-				-1.6
5,965,006	-				+1.4
5,965,006	-				+0.4
5,965,006	-				+0.4
5,965,052	+		Pf6N2E2_5176	0.12	+1.4
5,965,052	+		Pf6N2E2_5176	0.12	+0.4
5,965,052	+		Pf6N2E2_5176	0.12	-0.6
5,965,052	+		Pf6N2E2_5176	0.12	-1.9
5,965,052	+		Pf6N2E2_5176	0.12	+0.4
5,965,075	+		Pf6N2E2_5176	0.16	-1.9
5,965,075	+		Pf6N2E2_5176	0.16	-1.2
5,965,075	+		Pf6N2E2_5176	0.16	-0.2
5,965,076	-		Pf6N2E2_5176	0.17	+0.4
5,965,076	-		Pf6N2E2_5176	0.17	-0.9
5,965,076	-		Pf6N2E2_5176	0.17	-0.9
5,965,076	-		Pf6N2E2_5176	0.17	-1.8
5,965,076	-		Pf6N2E2_5176	0.17	-1.6
5,965,302	+		Pf6N2E2_5176	0.63	+0.4
5,965,303	-		Pf6N2E2_5176	0.63	-0.9
5,965,303	-		Pf6N2E2_5176	0.63	-2.3
5,965,303	-		Pf6N2E2_5176	0.63	-2.1
5,965,303	-		Pf6N2E2_5176	0.63	-0.2
5,965,305	+		Pf6N2E2_5176	0.63	-1.3
5,965,305	+		Pf6N2E2_5176	0.63	+0.4
5,965,312	-		Pf6N2E2_5176	0.65	-2.3
5,965,316	-		Pf6N2E2_5176	0.65	-1.2
5,965,316	-		Pf6N2E2_5176	0.65	-3.3
5,965,316	-		Pf6N2E2_5176	0.65	-0.2
5,965,351	+		Pf6N2E2_5176	0.73	-2.3
5,965,351	+		Pf6N2E2_5176	0.73	-0.6
5,965,351	+		Pf6N2E2_5176	0.73	-2.2
5,965,351	+		Pf6N2E2_5176	0.73	-2.9
5,965,351	+		Pf6N2E2_5176	0.73	+1.4
5,965,352	-		Pf6N2E2_5176	0.73	-1.8
5,965,352	-		Pf6N2E2_5176	0.73	-0.6
5,965,352	-		Pf6N2E2_5176	0.73	-0.6
5,965,353	+		Pf6N2E2_5176	0.73	-1.8
5,965,472	+				+0.8
5,965,472	+				-2.9
5,965,472	+				+1.4
5,965,472	+				-1.8
5,965,473	-				-3.8
5,965,473	-				-3.0
5,965,473	-				-4.3
5,965,483	+				-1.8
5,965,484	-				+1.4
5,965,484	-				-4.0
5,965,493	+				-3.0
5,965,543	+				-2.1
5,965,867	+		Pf6N2E2_5177	0.33	-0.6
5,965,867	+		Pf6N2E2_5177	0.33	-2.6
5,965,867	+		Pf6N2E2_5177	0.33	-3.8
5,965,867	+		Pf6N2E2_5177	0.33	-3.0
5,965,867	+		Pf6N2E2_5177	0.33	-3.7
5,965,868	-		Pf6N2E2_5177	0.33	-0.8
5,965,988	-		Pf6N2E2_5177	0.45	-1.4
5,965,988	-		Pf6N2E2_5177	0.45	-2.2
5,965,988	-		Pf6N2E2_5177	0.45	-1.2