Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5157

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
5,944,326	+		Pf6N2E2_5156	0.36	+1.4
5,944,326	+		Pf6N2E2_5156	0.36	+1.4
5,944,327	-		Pf6N2E2_5156	0.36	-2.1
5,944,767	+		Pf6N2E2_5156	0.67	+1.4
5,944,816	+		Pf6N2E2_5156	0.70	+0.4
5,944,822	+		Pf6N2E2_5156	0.71	+1.4
5,944,956	+		Pf6N2E2_5156	0.80	-1.2
5,944,957	-		Pf6N2E2_5156	0.80	+1.4
5,944,957	-		Pf6N2E2_5156	0.80	+1.4
5,945,334	+				-1.4
5,945,334	+				-0.6
5,945,335	-				-0.5
5,945,335	-				+0.4
5,945,390	-				-0.3
5,946,156	+		Pf6N2E2_5157	0.30	+1.4
5,946,294	+		Pf6N2E2_5157	0.35	+1.4
5,946,294	+		Pf6N2E2_5157	0.35	+1.4
5,946,294	+		Pf6N2E2_5157	0.35	+1.4
5,946,294	+		Pf6N2E2_5157	0.35	+0.4
5,946,295	-		Pf6N2E2_5157	0.35	-0.8
5,946,295	-		Pf6N2E2_5157	0.35	-1.6
5,946,295	-		Pf6N2E2_5157	0.35	+0.4
5,946,295	-		Pf6N2E2_5157	0.35	-2.8
5,946,415	+		Pf6N2E2_5157	0.39	+1.4
5,946,416	-		Pf6N2E2_5157	0.39	-2.3
5,946,437	-		Pf6N2E2_5157	0.40	-1.8
5,946,560	-		Pf6N2E2_5157	0.44	+0.4
5,946,560	-		Pf6N2E2_5157	0.44	+0.4
5,946,798	-		Pf6N2E2_5157	0.52	+3.0
5,946,823	+		Pf6N2E2_5157	0.53	-0.2
5,946,823	+		Pf6N2E2_5157	0.53	+0.4
5,946,824	-		Pf6N2E2_5157	0.53	-2.8
5,946,824	-		Pf6N2E2_5157	0.53	-1.6
5,946,824	-		Pf6N2E2_5157	0.53	+0.4
5,946,824	-		Pf6N2E2_5157	0.53	-2.8
5,946,824	-		Pf6N2E2_5157	0.53	-1.6
5,946,824	-		Pf6N2E2_5157	0.53	-2.1
5,946,824	-		Pf6N2E2_5157	0.53	-3.1
5,946,845	+		Pf6N2E2_5157	0.54	+0.4
5,946,846	-		Pf6N2E2_5157	0.54	-1.9
5,946,846	-		Pf6N2E2_5157	0.54	-0.3
5,946,847	+		Pf6N2E2_5157	0.54	+1.4
5,946,847	+				+1.4
5,946,848	-		Pf6N2E2_5157	0.54	-0.6
5,946,848	-		Pf6N2E2_5157	0.54	-1.5
5,946,848	-		Pf6N2E2_5157	0.54	-0.4
5,946,848	-		Pf6N2E2_5157	0.54	+0.8
5,946,848	-		Pf6N2E2_5157	0.54	-0.4
5,946,848	-		Pf6N2E2_5157	0.54	+0.1
5,946,955	+		Pf6N2E2_5157	0.57	+0.4
5,946,956	-		Pf6N2E2_5157	0.57	-0.9
5,946,956	-		Pf6N2E2_5157	0.57	-0.8
5,946,956	-		Pf6N2E2_5157	0.57	-0.5
5,946,956	-		Pf6N2E2_5157	0.57	-0.6
5,946,956	-		Pf6N2E2_5157	0.57	+0.1
5,947,051	+		Pf6N2E2_5157	0.61	+1.4
5,947,052	-		Pf6N2E2_5157	0.61	-2.8
5,947,117	+		Pf6N2E2_5157	0.63	+1.4
5,947,118	-		Pf6N2E2_5157	0.63	+1.4
5,947,118	-		Pf6N2E2_5157	0.63	+0.6
5,947,122	-		Pf6N2E2_5157	0.63	-0.7
5,947,122	-		Pf6N2E2_5157	0.63	-1.7
5,947,122	-		Pf6N2E2_5157	0.63	-1.2
5,947,122	-		Pf6N2E2_5157	0.63	-2.5
5,947,237	+		Pf6N2E2_5157	0.67	+1.4
5,947,237	+		Pf6N2E2_5157	0.67	+1.4
5,947,238	-		Pf6N2E2_5157	0.67	-0.3
5,947,238	-		Pf6N2E2_5157	0.67	+0.4
5,947,295	-		Pf6N2E2_5157	0.69	+0.4
5,947,366	-		Pf6N2E2_5157	0.71	-0.9
5,947,366	-		Pf6N2E2_5157	0.71	-0.6
5,947,366	-		Pf6N2E2_5157	0.71	-1.8
5,947,366	-		Pf6N2E2_5157	0.71	-3.0
5,947,441	+		Pf6N2E2_5157	0.74	+1.4
5,947,442	-		Pf6N2E2_5157	0.74	-3.0
5,947,442	-		Pf6N2E2_5157	0.74	+1.4
5,947,442	-		Pf6N2E2_5157	0.74	-0.6
5,947,442	-		Pf6N2E2_5157	0.74	+0.6
5,947,442	-		Pf6N2E2_5157	0.74	-1.4
5,947,442	-		Pf6N2E2_5157	0.74	+1.4
5,947,442	-		Pf6N2E2_5157	0.74	-1.9
5,947,442	-		Pf6N2E2_5157	0.74	-2.1
5,947,442	-		Pf6N2E2_5157	0.74	-0.6
5,947,592	-		Pf6N2E2_5157	0.79	+1.4
5,947,600	+		Pf6N2E2_5157	0.79	+1.4
5,947,600	+		Pf6N2E2_5157	0.79	+1.4
5,947,601	-		Pf6N2E2_5157	0.79	+0.4
5,947,601	-		Pf6N2E2_5157	0.79	-0.2
5,947,732	-		Pf6N2E2_5157	0.84	-1.3
5,947,922	-				-1.8
5,947,922	-				-0.9
5,947,922	-				-2.0
5,948,045	-				+0.2
5,948,045	-				-0.9
5,948,045	-				-0.6
5,948,045	-				-0.2
5,948,045	-				-1.5
5,948,066	-				-1.9
5,948,087	-				-0.4
5,948,167	+				+1.4
5,948,201	+				-0.6
5,948,202	-				-0.2
5,948,270	+		Pf6N2E2_5158	0.40	-0.9
5,948,333	+		Pf6N2E2_5158	0.75	-0.6
5,948,333	+		Pf6N2E2_5158	0.75	+1.1
5,948,334	-		Pf6N2E2_5158	0.76	-2.3
5,948,334	-		Pf6N2E2_5158	0.76	+0.4
5,948,334	-		Pf6N2E2_5158	0.76	+1.4
5,948,334	-		Pf6N2E2_5158	0.76	-0.1
5,948,334	-		Pf6N2E2_5158	0.76	+1.4
5,948,334	-		Pf6N2E2_5158	0.76	+0.1
5,948,334	-		Pf6N2E2_5158	0.76	-0.2
5,948,344	+		Pf6N2E2_5158	0.81	-1.3
5,948,366	+				-0.4
5,948,366	+				-0.2
5,948,366	+				+0.1
5,948,366	+				-0.3
5,948,367	-				-0.2
5,948,367	-				-0.5
5,948,367	-				-0.2
5,948,367	-				+0.0
5,948,370	+				+0.4
5,948,370	+				-0.2
5,948,370	+				-0.9
5,948,370	+				+1.4
5,948,370	+				+1.4
5,948,371	-				-1.3
5,948,371	-				-0.9
5,948,371	-				-0.1
5,948,371	-				-0.2
5,948,371	-				+0.8
5,948,371	-				-1.7
5,948,371	-				+1.4
5,948,371	-				+0.4
5,948,371	-				+0.3
5,948,371	-				-0.7
5,948,371	-				-1.4
5,948,371	-				-2.2
5,948,372	+				-1.4
5,948,372	+				+1.4
5,948,372	+				+0.4
5,948,372	+				+1.4
5,948,372	+				+1.4
5,948,372	+				+2.4
5,948,372	+				-2.1
5,948,372	+				+1.4
5,948,372	+				+1.4
5,948,372	+				+0.4
5,948,372	+				-0.2
5,948,372	+				+1.4
5,948,372	+				+1.4
5,948,372	+				+1.4
5,948,372	+				-0.8
5,948,373	-				-0.2
5,948,373	-				-1.4
5,948,373	-				-0.0
5,948,373	-				-0.9
5,948,373	-				-2.8
5,948,373	-				-1.4
5,948,373	-				-1.0
5,948,373	-				-1.6
5,948,373	-				-0.0
5,948,373	-				-0.2
5,948,373	-				-0.2
5,948,373	-				-0.1
5,948,373	-				+1.4
5,948,373	-				-0.6
5,948,373	-				-1.1
5,948,373	-				-2.5
5,948,373	-				+0.1
5,948,373	-				+1.4
5,948,373	-				-1.2
5,948,373	-				+2.1
5,948,373	-				-0.6
5,948,373	-				-1.1
5,948,373	-				-0.6
5,948,373	-				-0.5
5,948,373	-				+0.4
5,948,373	-				-0.7
5,948,373	-				+1.4
5,948,373	-				+0.4
5,948,373	-				+0.1
5,948,373	-				+0.4
5,948,373	-				-0.6
5,948,373	-				+2.4
5,948,373	-				-1.3
5,948,373	-				-2.3
5,948,373	-				-0.3
5,948,373	-				-0.2
5,948,373	-				-1.2
5,948,373	-				+0.1
5,948,373	-				-2.9
5,948,388	+				-0.5
5,948,389	-				-1.8
5,948,389	-				-0.7
5,948,393	+				-0.8
5,948,393	+				-0.0
5,948,394	-				-0.2
5,948,461	+				+0.6
5,948,461	+				-0.4
5,948,462	-				+0.0
5,948,652	+		Pf6N2E2_5159	0.22	-0.0
5,948,653	-		Pf6N2E2_5159	0.22	+0.3
5,948,735	+		Pf6N2E2_5159	0.32	+0.5
5,948,736	-		Pf6N2E2_5159	0.32	-0.5
5,948,736	-		Pf6N2E2_5159	0.32	-0.8
5,948,736	-		Pf6N2E2_5159	0.32	-0.6
5,948,829	-		Pf6N2E2_5159	0.42	+0.2
5,948,834	+		Pf6N2E2_5159	0.43	+0.1
5,948,835	-		Pf6N2E2_5159	0.43	-1.5
5,948,924	+		Pf6N2E2_5159	0.53	-0.3
5,948,924	+		Pf6N2E2_5159	0.53	+1.4
5,948,924	+		Pf6N2E2_5159	0.53	+1.4
5,948,924	+		Pf6N2E2_5159	0.53	+0.6
5,948,999	+		Pf6N2E2_5159	0.62	-1.0
5,948,999	+		Pf6N2E2_5159	0.62	+0.2
5,948,999	+		Pf6N2E2_5159	0.62	+1.0
5,949,000	-		Pf6N2E2_5159	0.62	+1.4
5,949,000	-		Pf6N2E2_5159	0.62	-0.3
5,949,012	-		Pf6N2E2_5159	0.63	+3.0
5,949,047	+		Pf6N2E2_5159	0.67	-1.6
5,949,047	+		Pf6N2E2_5159	0.67	+1.4
5,949,048	-		Pf6N2E2_5159	0.67	+0.2
5,949,089	+		Pf6N2E2_5159	0.72	-1.8
5,949,090	-		Pf6N2E2_5159	0.72	+0.1
5,949,090	-		Pf6N2E2_5159	0.72	+1.1
5,949,090	-		Pf6N2E2_5159	0.72	+1.4
5,949,090	-		Pf6N2E2_5159	0.72	-0.9
5,949,090	-		Pf6N2E2_5159	0.72	-0.6
5,949,143	+		Pf6N2E2_5159	0.78	-0.2
5,949,143	+		Pf6N2E2_5159	0.78	+1.4
5,949,144	-		Pf6N2E2_5159	0.78	+1.4