Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5116

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
5,897,528	-				+0.3
5,897,528	-				-0.1
5,897,554	+				+1.4
5,897,554	+				-0.6
5,897,562	-				+1.8
5,897,562	-				-0.0
5,897,562	-				-0.0
5,897,571	+				-0.5
5,897,571	+				-0.8
5,897,572	-				+0.0
5,897,572	-				+0.1
5,897,572	-				-0.3
5,897,572	-				+0.4
5,897,572	-				+0.1
5,897,572	-				-1.2
5,897,573	+				+0.8
5,897,574	-				-0.2
5,897,574	-				-0.2
5,897,574	-				-0.6
5,897,610	-				+0.5
5,897,610	-				-0.4
5,897,610	-				+0.8
5,897,669	+		Pf6N2E2_5114	0.15	-0.8
5,897,670	-		Pf6N2E2_5114	0.15	-0.3
5,897,670	-		Pf6N2E2_5114	0.15	+0.6
5,897,844	+		Pf6N2E2_5114	0.52	+1.4
5,897,844	+		Pf6N2E2_5114	0.52	+0.4
5,897,844	+		Pf6N2E2_5114	0.52	+0.2
5,897,845	-		Pf6N2E2_5114	0.52	+0.3
5,897,845	-		Pf6N2E2_5114	0.52	+1.6
5,897,845	-		Pf6N2E2_5114	0.52	+0.1
5,897,845	-		Pf6N2E2_5114	0.52	+0.1
5,897,852	+		Pf6N2E2_5114	0.54	-0.9
5,897,872	+		Pf6N2E2_5114	0.58	-0.4
5,897,872	+		Pf6N2E2_5114	0.58	+0.7
5,897,872	+		Pf6N2E2_5114	0.58	+0.4
5,897,872	+		Pf6N2E2_5114	0.58	-1.2
5,897,937	-		Pf6N2E2_5114	0.72	+0.2
5,897,994	+		Pf6N2E2_5114	0.84	-0.6
5,897,994	+		Pf6N2E2_5114	0.84	+1.1
5,897,995	-		Pf6N2E2_5114	0.84	-0.1
5,897,995	-		Pf6N2E2_5114	0.84	-0.4
5,897,995	-		Pf6N2E2_5114	0.84	+1.4
5,897,995	-		Pf6N2E2_5114	0.84	-0.1
5,897,995	-		Pf6N2E2_5114	0.84	-0.9
5,897,995	-		Pf6N2E2_5114	0.84	-0.6
5,897,998	+		Pf6N2E2_5114	0.84	-1.1
5,897,998	+		Pf6N2E2_5114	0.84	-1.2
5,897,998	+		Pf6N2E2_5114	0.84	-0.5
5,897,998	+		Pf6N2E2_5114	0.84	+0.5
5,897,998	+		Pf6N2E2_5114	0.84	+0.5
5,897,998	+		Pf6N2E2_5114	0.84	-0.0
5,897,999	-		Pf6N2E2_5114	0.85	-0.2
5,897,999	-		Pf6N2E2_5114	0.85	-0.2
5,897,999	-		Pf6N2E2_5114	0.85	-0.1
5,898,050	-				+0.6
5,898,050	-				-0.0
5,898,188	+		Pf6N2E2_5115	0.26	-0.7
5,898,188	+		Pf6N2E2_5115	0.26	-0.4
5,898,189	-		Pf6N2E2_5115	0.26	-0.5
5,898,189	-		Pf6N2E2_5115	0.26	-0.3
5,898,234	-		Pf6N2E2_5115	0.36	-0.2
5,898,275	+		Pf6N2E2_5115	0.45	+0.4
5,898,275	+		Pf6N2E2_5115	0.45	+0.2
5,898,275	+		Pf6N2E2_5115	0.45	+1.2
5,898,276	-		Pf6N2E2_5115	0.45	-0.7
5,898,276	-		Pf6N2E2_5115	0.45	-0.3
5,898,408	-		Pf6N2E2_5115	0.74	-0.2
5,898,633	+		Pf6N2E2_5116	0.15	+0.7
5,898,634	-		Pf6N2E2_5116	0.15	+0.5
5,898,637	+		Pf6N2E2_5116	0.15	-0.8
5,898,637	+		Pf6N2E2_5116	0.15	+0.5
5,898,637	+		Pf6N2E2_5116	0.15	+0.6
5,898,637	+		Pf6N2E2_5116	0.15	+1.1
5,898,638	-		Pf6N2E2_5116	0.16	+0.5
5,898,638	-		Pf6N2E2_5116	0.16	-0.9
5,898,970	+		Pf6N2E2_5116	0.62	+1.4
5,898,970	+		Pf6N2E2_5116	0.62	-1.1
5,899,040	+		Pf6N2E2_5116	0.72	+1.1
5,899,112	-		Pf6N2E2_5116	0.82	+0.5
5,899,211	+				+0.4
5,899,211	+				+0.5
5,899,211	+				+1.4
5,899,212	-				-0.4
5,899,212	-				-0.4
5,899,212	-				+0.7
5,899,212	-				+0.0
5,899,212	-				+0.2
5,899,238	+				+0.6
5,899,238	+				-0.8
5,899,238	+				+0.6
5,899,238	+				+1.2
5,899,238	+				+1.7
5,899,238	+				-0.3
5,899,238	+				+0.2
5,899,239	-				-0.4
5,899,239	-				+0.6
5,899,239	-				-0.6
5,899,239	-				-0.2
5,899,239	-				+0.6
5,899,239	-				+0.1
5,899,467	+		Pf6N2E2_5117	0.43	-1.7
5,899,467	+		Pf6N2E2_5117	0.43	-0.4
5,899,467	+		Pf6N2E2_5117	0.43	-0.1
5,899,468	-		Pf6N2E2_5117	0.44	+0.6
5,899,468	-		Pf6N2E2_5117	0.44	+0.1
5,899,468	-		Pf6N2E2_5117	0.44	+0.1
5,899,468	-		Pf6N2E2_5117	0.44	+0.2
5,899,468	-		Pf6N2E2_5117	0.44	-0.4
5,899,468	-		Pf6N2E2_5117	0.44	-1.0
5,899,468	-		Pf6N2E2_5117	0.44	-0.2
5,899,484	+		Pf6N2E2_5117	0.47	-0.1
5,899,485	-		Pf6N2E2_5117	0.47	+1.1
5,899,590	+		Pf6N2E2_5117	0.69	-0.5
5,899,590	+		Pf6N2E2_5117	0.69	+0.1
5,899,590	+		Pf6N2E2_5117	0.69	+0.0
5,899,610	+		Pf6N2E2_5117	0.74	-0.5
5,899,611	-		Pf6N2E2_5117	0.74	-0.6
5,899,611	-		Pf6N2E2_5117	0.74	-0.3
5,899,611	-		Pf6N2E2_5117	0.74	-1.2
5,899,613	+		Pf6N2E2_5117	0.74	+1.4
5,899,613	+		Pf6N2E2_5117	0.74	-0.2
5,899,613	+		Pf6N2E2_5117	0.74	-0.0
5,899,614	-		Pf6N2E2_5117	0.75	+0.2
5,899,614	-		Pf6N2E2_5117	0.75	+0.3
5,899,614	-		Pf6N2E2_5117	0.75	-0.3
5,899,614	-		Pf6N2E2_5117	0.75	+0.8
5,899,643	+		Pf6N2E2_5117	0.81	+0.3
5,899,644	-		Pf6N2E2_5117	0.81	+0.6
5,899,644	-		Pf6N2E2_5117	0.81	-0.3
5,899,644	-		Pf6N2E2_5117	0.81	+0.0
5,899,660	-		Pf6N2E2_5117	0.84	-0.7
5,899,692	-				-1.6
5,899,719	+				-0.2
5,899,720	-				+0.9
5,899,720	-				+0.7
5,899,728	+				+1.6
5,899,728	+				-0.6
5,899,728	+				+1.1
5,899,728	+				+1.4
5,899,729	-				-1.6
5,899,729	-				-0.9
5,899,729	-				+0.0
5,899,729	-				-0.0
5,899,731	+				+0.5
5,899,731	+				+0.2
5,899,731	+				-0.2
5,899,731	+				-1.9
5,899,731	+				-0.1
5,899,732	-				+0.0
5,899,732	-				+0.0
5,899,732	-				-0.8
5,899,783	+				-0.7
5,899,783	+				-0.2
5,899,784	-				+0.4
5,899,802	-				+0.7
5,899,802	-				+0.4
5,899,899	+				+0.2
5,899,899	+				-0.4
5,899,899	+				-0.3
5,899,899	+				+0.8
5,899,899	+				-0.4
5,899,899	+				-0.0
5,899,899	+				+0.4
5,899,899	+				+0.7
5,899,899	+				-0.9
5,899,900	-				-0.6
5,899,900	-				+0.8
5,899,900	-				+1.4
5,899,900	-				-0.0
5,899,900	-				+0.1
5,899,900	-				+0.0
5,899,945	+				-1.7
5,899,945	+				-2.7
5,899,945	+				-0.2
5,899,945	+				-0.9
5,899,945	+				+3.0
5,899,945	+				-1.0
5,899,946	-				-0.2
5,899,946	-				-0.1
5,899,946	-				-0.2
5,899,946	-				+0.4
5,899,946	-				-0.1
5,899,946	-				+0.3
5,899,946	-				-0.4
5,899,946	-				+0.4
5,899,963	-				+0.2
5,899,981	+				-0.1
5,899,981	+				+0.4
5,899,981	+				-0.4
5,899,981	+				+0.9
5,899,981	+				-0.4
5,899,981	+				+0.1
5,899,981	+				-1.8
5,899,982	-				+0.4
5,900,018	+				+0.7
5,900,128	+		Pf6N2E2_5118	0.13	+1.2
5,900,130	+		Pf6N2E2_5118	0.13	+0.4
5,900,130	+		Pf6N2E2_5118	0.13	+0.5
5,900,130	+		Pf6N2E2_5118	0.13	-0.4
5,900,131	-		Pf6N2E2_5118	0.13	+0.6
5,900,137	-		Pf6N2E2_5118	0.13	+1.4
5,900,140	+		Pf6N2E2_5118	0.14	-0.2
5,900,140	+		Pf6N2E2_5118	0.14	-0.0
5,900,140	+		Pf6N2E2_5118	0.14	+0.8
5,900,141	-		Pf6N2E2_5118	0.14	+0.1
5,900,141	-		Pf6N2E2_5118	0.14	+0.4
5,900,141	-		Pf6N2E2_5118	0.14	+0.1
5,900,149	+		Pf6N2E2_5118	0.14	+0.2
5,900,150	-		Pf6N2E2_5118	0.14	+1.3