Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_477
Experiment: Nitrate reduction, replicate A
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nitrate reduction, replicate A |
---|---|---|---|---|---|
remove | |||||
541,373 | + | Pf6N2E2_476 | 0.30 | +0.1 | |
541,373 | + | Pf6N2E2_476 | 0.30 | +0.1 | |
541,405 | - | Pf6N2E2_476 | 0.34 | +0.4 | |
541,615 | + | Pf6N2E2_476 | 0.56 | +0.7 | |
541,616 | - | Pf6N2E2_476 | 0.56 | +0.4 | |
541,919 | + | Pf6N2E2_476 | 0.89 | +0.0 | |
542,019 | + | -0.0 | |||
542,264 | + | -3.5 | |||
542,327 | + | Pf6N2E2_477 | 0.13 | -3.5 | |
542,327 | + | Pf6N2E2_477 | 0.13 | -2.2 | |
542,328 | - | Pf6N2E2_477 | 0.13 | -4.1 | |
542,328 | - | Pf6N2E2_477 | 0.13 | -4.1 | |
542,328 | - | Pf6N2E2_477 | 0.13 | -3.4 | |
542,652 | - | Pf6N2E2_477 | 0.45 | -0.2 | |
542,747 | + | Pf6N2E2_477 | 0.54 | -3.9 | |
542,843 | + | Pf6N2E2_477 | 0.63 | -5.0 | |
543,173 | + | -3.9 | |||
543,174 | - | -2.4 | |||
543,174 | - | -2.7 | |||
543,226 | + | -4.3 | |||
543,226 | + | -3.2 | |||
543,227 | - | +0.1 | |||
543,227 | - | +0.4 | |||
543,288 | + | -3.8 | |||
543,288 | + | -1.6 | |||
543,288 | + | -2.4 | |||
543,288 | + | -4.0 | |||
543,288 | + | -3.6 | |||
543,288 | + | -3.0 | |||
543,289 | - | +1.3 | |||
543,289 | - | -0.9 | |||
543,289 | - | +0.4 | |||
543,289 | - | +2.4 | |||
543,289 | - | -0.1 | |||
543,289 | - | +0.2 | |||
543,289 | - | +1.2 | |||
543,289 | - | +0.4 | |||
543,289 | - | -0.3 | |||
543,501 | + | +0.3 | |||
544,195 | - | Pf6N2E2_478 | 0.50 | +0.1 | |
544,195 | - | Pf6N2E2_478 | 0.50 | -0.3 |
Or see this region's nucleotide sequence