Experiment: Nitrate reduction, replicate A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4370 and Pf6N2E2_4371 are separated by 44 nucleotides Pf6N2E2_4371 and Pf6N2E2_4372 are separated by 542 nucleotides Pf6N2E2_4372 and Pf6N2E2_4373 are separated by 53 nucleotides Pf6N2E2_4373 and Pf6N2E2_4374 are separated by 27 nucleotides
Pf6N2E2_4370 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 5,098,965 to 5,099,609
_4370
Pf6N2E2_4371 - hypothetical protein, at 5,099,654 to 5,099,968
_4371
Pf6N2E2_4372 - FIG00460773: hypothetical protein, at 5,100,511 to 5,101,755
_4372
Pf6N2E2_4373 - Acetylglutamate kinase (EC 2.7.2.8), at 5,101,809 to 5,102,714
_4373
Pf6N2E2_4374 - Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2), at 5,102,742 to 5,104,139
_4374
Position (kb)
5100
5101
5102 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5099.587 kb on - strand at 5099.641 kb on + strand at 5099.641 kb on + strand at 5099.681 kb on + strand at 5099.681 kb on + strand at 5099.681 kb on + strand at 5099.682 kb on - strand at 5099.769 kb on - strand, within Pf6N2E2_4371 at 5099.785 kb on - strand, within Pf6N2E2_4371 at 5099.896 kb on - strand, within Pf6N2E2_4371 at 5099.899 kb on + strand, within Pf6N2E2_4371 at 5099.899 kb on + strand, within Pf6N2E2_4371 at 5099.899 kb on + strand, within Pf6N2E2_4371 at 5099.900 kb on - strand, within Pf6N2E2_4371 at 5099.910 kb on + strand, within Pf6N2E2_4371 at 5099.910 kb on + strand, within Pf6N2E2_4371 at 5099.910 kb on + strand, within Pf6N2E2_4371 at 5099.910 kb on + strand, within Pf6N2E2_4371 at 5099.910 kb on + strand, within Pf6N2E2_4371 at 5099.911 kb on - strand, within Pf6N2E2_4371 at 5099.911 kb on - strand, within Pf6N2E2_4371 at 5099.911 kb on - strand, within Pf6N2E2_4371 at 5099.911 kb on - strand, within Pf6N2E2_4371 at 5099.911 kb on - strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.913 kb on + strand, within Pf6N2E2_4371 at 5099.914 kb on - strand, within Pf6N2E2_4371 at 5099.914 kb on - strand, within Pf6N2E2_4371 at 5099.914 kb on - strand, within Pf6N2E2_4371 at 5099.914 kb on - strand, within Pf6N2E2_4371 at 5099.914 kb on - strand, within Pf6N2E2_4371 at 5099.914 kb on - strand, within Pf6N2E2_4371 at 5099.914 kb on - strand, within Pf6N2E2_4371 at 5099.914 kb on - strand, within Pf6N2E2_4371 at 5099.914 kb on - strand, within Pf6N2E2_4371 at 5099.914 kb on - strand, within Pf6N2E2_4371 at 5099.938 kb on + strand at 5099.938 kb on + strand at 5099.938 kb on + strand at 5099.938 kb on + strand at 5099.939 kb on - strand at 5099.939 kb on - strand at 5099.939 kb on - strand at 5099.939 kb on - strand at 5099.939 kb on - strand at 5099.939 kb on - strand at 5099.939 kb on - strand at 5099.939 kb on - strand at 5099.939 kb on - strand at 5099.939 kb on - strand at 5099.951 kb on - strand at 5099.959 kb on - strand at 5099.987 kb on - strand at 5100.057 kb on + strand at 5100.058 kb on - strand at 5100.116 kb on - strand at 5100.124 kb on + strand at 5100.125 kb on - strand at 5100.176 kb on + strand at 5100.176 kb on + strand at 5100.177 kb on - strand at 5100.230 kb on + strand at 5100.230 kb on + strand at 5100.230 kb on + strand at 5100.231 kb on - strand at 5100.231 kb on - strand at 5100.231 kb on - strand at 5100.231 kb on - strand at 5100.231 kb on - strand at 5100.231 kb on - strand at 5100.249 kb on + strand at 5100.249 kb on + strand at 5100.250 kb on - strand at 5100.314 kb on + strand at 5100.314 kb on + strand at 5100.314 kb on + strand at 5100.337 kb on + strand at 5100.338 kb on - strand at 5100.338 kb on - strand at 5100.358 kb on + strand at 5100.358 kb on + strand at 5100.359 kb on - strand at 5100.467 kb on - strand at 5100.467 kb on - strand at 5100.473 kb on - strand at 5100.473 kb on - strand at 5100.480 kb on + strand at 5100.480 kb on + strand at 5100.593 kb on + strand at 5100.715 kb on + strand, within Pf6N2E2_4372 at 5100.755 kb on + strand, within Pf6N2E2_4372 at 5100.761 kb on + strand, within Pf6N2E2_4372 at 5100.782 kb on + strand, within Pf6N2E2_4372 at 5100.886 kb on + strand, within Pf6N2E2_4372 at 5100.896 kb on + strand, within Pf6N2E2_4372 at 5100.896 kb on + strand, within Pf6N2E2_4372 at 5100.896 kb on + strand, within Pf6N2E2_4372 at 5101.161 kb on + strand, within Pf6N2E2_4372 at 5101.161 kb on + strand, within Pf6N2E2_4372 at 5101.161 kb on + strand, within Pf6N2E2_4372 at 5101.161 kb on + strand, within Pf6N2E2_4372 at 5101.247 kb on + strand, within Pf6N2E2_4372 at 5101.295 kb on + strand, within Pf6N2E2_4372 at 5101.343 kb on + strand, within Pf6N2E2_4372 at 5101.343 kb on + strand, within Pf6N2E2_4372 at 5101.343 kb on + strand, within Pf6N2E2_4372 at 5101.398 kb on + strand, within Pf6N2E2_4372 at 5101.425 kb on + strand, within Pf6N2E2_4372 at 5101.466 kb on + strand, within Pf6N2E2_4372 at 5101.672 kb on + strand at 5101.672 kb on + strand at 5101.779 kb on + strand at 5101.780 kb on - strand at 5101.780 kb on - strand at 5101.780 kb on - strand at 5101.810 kb on + strand at 5101.811 kb on - strand at 5101.811 kb on - strand at 5101.811 kb on - strand at 5101.839 kb on - strand at 5101.839 kb on - strand at 5101.839 kb on - strand at 5102.752 kb on - strand at 5102.752 kb on - strand at 5102.752 kb on - strand at 5102.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A remove 5,099,587 - +0.1 5,099,641 + +1.3 5,099,641 + -1.2 5,099,681 + +0.1 5,099,681 + +1.0 5,099,681 + -0.9 5,099,682 - +1.0 5,099,769 - Pf6N2E2_4371 0.37 -0.6 5,099,785 - Pf6N2E2_4371 0.42 +0.0 5,099,896 - Pf6N2E2_4371 0.77 -0.5 5,099,899 + Pf6N2E2_4371 0.78 +0.2 5,099,899 + Pf6N2E2_4371 0.78 +0.2 5,099,899 + Pf6N2E2_4371 0.78 +0.6 5,099,900 - Pf6N2E2_4371 0.78 +0.5 5,099,910 + Pf6N2E2_4371 0.81 +0.3 5,099,910 + Pf6N2E2_4371 0.81 +0.3 5,099,910 + Pf6N2E2_4371 0.81 -0.4 5,099,910 + Pf6N2E2_4371 0.81 -0.2 5,099,910 + Pf6N2E2_4371 0.81 -1.0 5,099,911 - Pf6N2E2_4371 0.82 -0.3 5,099,911 - Pf6N2E2_4371 0.82 -0.5 5,099,911 - Pf6N2E2_4371 0.82 -0.1 5,099,911 - Pf6N2E2_4371 0.82 -0.1 5,099,911 - Pf6N2E2_4371 0.82 -0.3 5,099,913 + Pf6N2E2_4371 0.82 +0.6 5,099,913 + Pf6N2E2_4371 0.82 +1.4 5,099,913 + Pf6N2E2_4371 0.82 -0.3 5,099,913 + Pf6N2E2_4371 0.82 +1.2 5,099,913 + Pf6N2E2_4371 0.82 +0.6 5,099,913 + Pf6N2E2_4371 0.82 -0.1 5,099,913 + Pf6N2E2_4371 0.82 +1.6 5,099,913 + Pf6N2E2_4371 0.82 +1.3 5,099,913 + Pf6N2E2_4371 0.82 +0.7 5,099,913 + Pf6N2E2_4371 0.82 +0.4 5,099,913 + Pf6N2E2_4371 0.82 +0.3 5,099,913 + Pf6N2E2_4371 0.82 +0.2 5,099,914 - Pf6N2E2_4371 0.83 -0.0 5,099,914 - Pf6N2E2_4371 0.83 -0.5 5,099,914 - Pf6N2E2_4371 0.83 +0.2 5,099,914 - Pf6N2E2_4371 0.83 -0.9 5,099,914 - Pf6N2E2_4371 0.83 +1.2 5,099,914 - Pf6N2E2_4371 0.83 +0.0 5,099,914 - Pf6N2E2_4371 0.83 -0.3 5,099,914 - Pf6N2E2_4371 0.83 -0.7 5,099,914 - Pf6N2E2_4371 0.83 +2.2 5,099,914 - Pf6N2E2_4371 0.83 +0.1 5,099,938 + +0.7 5,099,938 + +0.3 5,099,938 + +0.4 5,099,938 + +0.4 5,099,939 - -0.6 5,099,939 - -1.9 5,099,939 - -0.1 5,099,939 - +0.1 5,099,939 - +0.0 5,099,939 - +2.2 5,099,939 - -0.4 5,099,939 - -0.1 5,099,939 - -0.4 5,099,939 - -0.4 5,099,951 - -0.4 5,099,959 - +0.4 5,099,987 - -1.9 5,100,057 + +0.5 5,100,058 - +0.1 5,100,116 - -0.7 5,100,124 + +0.6 5,100,125 - +0.4 5,100,176 + -0.9 5,100,176 + +0.0 5,100,177 - -0.8 5,100,230 + +0.3 5,100,230 + -1.3 5,100,230 + -0.4 5,100,231 - -0.9 5,100,231 - -0.8 5,100,231 - -1.4 5,100,231 - +1.3 5,100,231 - +0.1 5,100,231 - -0.8 5,100,249 + +1.1 5,100,249 + +0.4 5,100,250 - -0.3 5,100,314 + +0.2 5,100,314 + +0.4 5,100,314 + +1.3 5,100,337 + -0.7 5,100,338 - -0.4 5,100,338 - +0.0 5,100,358 + -0.3 5,100,358 + +0.4 5,100,359 - +0.4 5,100,467 - +0.0 5,100,467 - -0.3 5,100,473 - -0.1 5,100,473 - -1.1 5,100,480 + +1.6 5,100,480 + +0.2 5,100,593 + -0.4 5,100,715 + Pf6N2E2_4372 0.16 +1.3 5,100,755 + Pf6N2E2_4372 0.20 +1.3 5,100,761 + Pf6N2E2_4372 0.20 -2.2 5,100,782 + Pf6N2E2_4372 0.22 +1.3 5,100,886 + Pf6N2E2_4372 0.30 -1.5 5,100,896 + Pf6N2E2_4372 0.31 -1.3 5,100,896 + Pf6N2E2_4372 0.31 -1.3 5,100,896 + Pf6N2E2_4372 0.31 -2.6 5,101,161 + Pf6N2E2_4372 0.52 +1.3 5,101,161 + Pf6N2E2_4372 0.52 -2.2 5,101,161 + Pf6N2E2_4372 0.52 +0.3 5,101,161 + Pf6N2E2_4372 0.52 +1.3 5,101,247 + Pf6N2E2_4372 0.59 +1.3 5,101,295 + Pf6N2E2_4372 0.63 -1.9 5,101,343 + Pf6N2E2_4372 0.67 -2.0 5,101,343 + Pf6N2E2_4372 0.67 -2.2 5,101,343 + Pf6N2E2_4372 0.67 +0.3 5,101,398 + Pf6N2E2_4372 0.71 -2.9 5,101,425 + Pf6N2E2_4372 0.73 -4.3 5,101,466 + Pf6N2E2_4372 0.77 -1.0 5,101,672 + -0.8 5,101,672 + -0.5 5,101,779 + +0.0 5,101,780 - -1.9 5,101,780 - +1.3 5,101,780 - -0.9 5,101,810 + +0.0 5,101,811 - +0.4 5,101,811 - -0.9 5,101,811 - -0.6 5,101,839 - -0.3 5,101,839 - +1.3 5,101,839 - +0.3 5,102,752 - -1.8 5,102,752 - +0.0 5,102,752 - +0.2 5,102,752 - -0.9
Or see this region's nucleotide sequence